Wall clock time and date at job start Sat Apr 11 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.70999 * 270.93585 * 3 2 1 5 5 C 1.34777 * 120.00404 * 300.54295 * 4 3 2 6 6 O 1.21286 * 119.99659 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00334 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47222 * 320.00024 * 7 5 4 9 9 N 1.46903 * 109.47370 * 199.99615 * 7 5 4 10 10 C 1.53004 * 109.47003 * 79.99691 * 7 5 4 11 11 C 1.52999 * 109.46822 * 184.99816 * 10 7 5 12 12 C 1.53004 * 109.46822 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.46949 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00040 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99583 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46985 * 89.99901 * 17 15 13 19 19 H 1.48493 * 109.47068 * 209.99813 * 17 15 13 20 20 H 1.48493 * 109.47335 * 330.00024 * 17 15 13 21 21 C 1.53320 * 109.68218 * 31.47644 * 3 2 1 22 22 C 1.52734 * 108.43343 * 49.88297 * 21 3 2 23 23 C 1.50627 * 110.60013 * 51.02488 * 22 21 3 24 24 C 1.38914 * 117.75463 * 162.33728 * 23 22 21 25 25 C 1.37931 * 120.54161 * 179.70160 * 24 23 22 26 26 C 1.38258 * 119.77835 * 359.97438 * 25 24 23 27 27 C 1.37938 * 119.77075 * 0.12286 * 26 25 24 28 28 C 1.37659 * 122.56500 * 342.26698 * 23 22 21 29 29 C 1.50638 * 122.56675 * 0.75466 * 28 23 22 30 30 H 0.97000 * 120.00017 * 120.53997 * 4 3 2 31 31 H 1.00896 * 111.00051 * 300.00366 * 9 7 5 32 32 H 1.00899 * 110.99629 * 63.95569 * 9 7 5 33 33 H 1.09000 * 109.47338 * 304.99998 * 10 7 5 34 34 H 1.08998 * 109.46789 * 65.00208 * 10 7 5 35 35 H 1.08993 * 109.47663 * 299.99974 * 11 10 7 36 36 H 1.08998 * 109.47118 * 60.00594 * 11 10 7 37 37 H 1.09000 * 109.47338 * 300.00182 * 12 11 10 38 38 H 1.08997 * 109.47300 * 60.00322 * 12 11 10 39 39 H 0.96994 * 119.99441 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.67996 * 290.13387 * 21 3 2 41 41 H 1.08995 * 109.67675 * 169.62830 * 21 3 2 42 42 H 1.08997 * 109.24686 * 171.31529 * 22 21 3 43 43 H 1.08998 * 109.24509 * 290.77103 * 22 21 3 44 44 H 1.07995 * 119.72965 * 359.71149 * 24 23 22 45 45 H 1.08005 * 120.11158 * 180.02562 * 25 24 23 46 46 H 1.08007 * 120.11547 * 180.09777 * 26 25 24 47 47 H 1.07992 * 119.72981 * 180.02562 * 27 26 25 48 48 H 1.08992 * 109.25960 * 102.43003 * 29 28 23 49 49 H 1.09005 * 109.25338 * 221.90214 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.1021 -0.0216 1.3790 5 6 2.7706 0.9697 2.2298 6 8 2.0636 1.8805 1.8536 7 6 3.2784 0.9464 3.6484 8 1 3.2420 -0.0738 4.0307 9 7 2.4365 1.8129 4.4842 10 6 4.7220 1.4523 3.6817 11 6 5.2789 1.3120 5.0998 12 6 6.7223 1.8184 5.1333 13 6 7.2711 1.6797 6.5299 14 1 6.6524 1.2707 7.3151 15 6 8.5630 2.0748 6.8055 16 7 9.3165 2.5723 5.8492 17 14 9.2430 1.9034 8.5368 18 1 9.8822 0.5716 8.6880 19 1 10.2507 2.9666 8.7803 20 1 8.1367 2.0358 9.5185 21 6 3.1250 -1.2303 -0.7538 22 6 2.4086 -1.3081 -2.1004 23 6 2.4952 0.0104 -2.8237 24 6 2.2373 0.0176 -4.1887 25 6 2.2944 1.1940 -4.9066 26 6 2.6103 2.3763 -4.2633 27 6 2.8686 2.3710 -2.9083 28 6 2.8148 1.1867 -2.1842 29 6 3.1210 1.2513 -0.7106 30 1 3.6679 -0.7499 1.6797 31 1 2.4535 2.7647 4.1500 32 1 1.4914 1.4627 4.5306 33 1 5.3290 0.8645 2.9932 34 1 4.7466 2.5005 3.3838 35 1 4.6720 1.8997 5.7884 36 1 5.2543 0.2638 5.3978 37 1 7.3296 1.2310 4.4446 38 1 6.7465 2.8667 4.8355 39 1 10.2255 2.8499 6.0430 40 1 2.9164 -2.1298 -0.1746 41 1 4.1991 -1.1381 -0.9143 42 1 2.8725 -2.0835 -2.7100 43 1 1.3607 -1.5591 -1.9360 44 1 1.9900 -0.9054 -4.6919 45 1 2.0923 1.1916 -5.9675 46 1 2.6550 3.3009 -4.8198 47 1 3.1148 3.2950 -2.4064 48 1 4.1992 1.3270 -0.5705 49 1 2.6402 2.1306 -0.2818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:36 Heat of formation + Delta-G solvation = -29.103946 kcal Electronic energy + Delta-G solvation = -29040.878219 eV Core-core repulsion = 25158.536928 eV Total energy + Delta-G solvation = -3882.341292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.04821 -40.62139 -38.58442 -37.06036 -36.58914 -35.20767 -34.76592 -33.40982 -33.07062 -30.97334 -29.88441 -29.32237 -26.79297 -25.28891 -24.44978 -23.93547 -23.12090 -21.93997 -21.54534 -21.00184 -18.83731 -18.39469 -18.37000 -17.39050 -17.13994 -17.02939 -16.45032 -16.12260 -15.96189 -15.66815 -15.57390 -15.37011 -15.19798 -15.12401 -14.52779 -14.35205 -14.23311 -14.09309 -13.90520 -13.67005 -13.61999 -13.50357 -13.22656 -13.05201 -12.84344 -12.73896 -12.57722 -12.42508 -12.34464 -12.26393 -12.13493 -11.88786 -11.58888 -11.41080 -11.31414 -11.17318 -10.90274 -10.52235 -10.47470 -9.71335 -9.67751 -9.51000 -8.13744 -6.23120 0.40513 0.43474 1.29583 1.40154 1.43713 1.44809 1.55800 1.60597 2.23111 2.46121 2.70637 2.80094 3.19606 3.35653 3.49831 3.57566 3.68435 3.90032 3.96469 4.00107 4.06626 4.17386 4.21790 4.27094 4.43420 4.52770 4.57023 4.59373 4.64759 4.74577 4.80893 4.87924 4.95629 5.00878 5.06456 5.10935 5.14991 5.21123 5.24238 5.34916 5.40925 5.56028 5.60428 5.65995 5.66158 5.91202 6.00033 6.04235 6.09780 6.33401 6.35446 6.41047 6.47125 6.95204 7.05009 7.45631 8.97789 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.002160 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.094550 B =12961.360614 C =13702.443693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.229 3.771 3 C 0.278 3.722 4 N -0.703 5.703 5 C 0.487 3.513 6 O -0.567 6.567 7 C 0.089 3.911 8 H 0.128 0.872 9 N -0.820 5.820 10 C -0.093 4.093 11 C -0.085 4.085 12 C 0.022 3.978 13 C -0.537 4.537 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.090 4.090 29 C -0.083 4.083 30 H 0.432 0.568 31 H 0.346 0.654 32 H 0.346 0.654 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.057 0.943 37 H -0.003 1.003 38 H -0.017 1.017 39 H 0.262 0.738 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 -10.747 -21.712 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.090 4.090 3 C 0.188 3.812 4 N -0.359 5.359 5 C 0.273 3.727 6 O -0.445 6.445 7 C -0.027 4.027 8 H 0.145 0.855 9 N -0.348 5.348 10 C -0.132 4.132 11 C -0.123 4.123 12 C -0.015 4.015 13 C -0.576 4.576 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.152 4.152 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.091 4.091 29 C -0.122 4.122 30 H 0.272 0.728 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.015 0.985 38 H 0.002 0.998 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.139 0.861 48 H 0.131 0.869 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.320 -10.227 -21.353 27.669 hybrid contribution 0.453 0.667 0.071 0.809 sum -13.867 -9.559 -21.281 27.140 Atomic orbital electron populations 1.81135 1.14384 1.10052 1.08692 1.29658 0.95538 0.91635 0.92189 1.17785 0.79228 1.00087 0.84135 1.46137 1.52916 1.27504 1.09343 1.22691 0.79111 0.81061 0.89845 1.90705 1.38915 1.36337 1.78544 1.21695 0.94515 1.00860 0.85654 0.85463 1.59058 1.15843 1.06475 1.53454 1.21477 0.92121 1.00936 0.98618 1.21287 0.95157 1.00489 0.95365 1.19053 0.93032 0.94325 0.95110 1.21751 0.98085 1.40873 0.96845 0.92381 1.25944 0.97716 0.95045 1.01243 1.70092 1.08956 1.44042 1.34387 0.85525 0.78137 0.77965 0.79902 1.19570 1.21094 1.19042 1.22027 1.03316 0.94720 0.95157 1.20561 1.01119 0.94608 0.95546 1.19848 0.99800 0.94795 0.94617 1.21457 0.99986 0.99418 0.93400 1.21418 0.99483 0.92537 1.01061 1.21348 0.99683 0.99392 0.94380 1.21339 1.00926 0.97787 0.95198 1.19563 1.01228 0.93663 0.94649 1.20832 1.03365 0.97002 0.90998 0.72753 0.84066 0.84095 0.89701 0.93458 0.93027 0.92414 0.98468 0.99830 0.92955 0.86751 0.85900 0.86230 0.91631 0.83848 0.83924 0.84547 0.86123 0.86875 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.88 18.54 20.01 0.37 -13.51 16 2 C 0.23 5.47 10.64 89.44 0.95 6.42 16 3 C 0.28 4.48 0.78 1.81 0.00 4.48 16 4 N -0.70 -10.47 5.10 -431.15 -2.20 -12.67 16 5 C 0.49 10.85 6.49 87.66 0.57 11.41 16 6 O -0.57 -16.87 13.63 -3.05 -0.04 -16.91 16 7 C 0.09 1.99 3.15 44.17 0.14 2.13 16 8 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 9 N -0.82 -20.56 8.44 -171.79 -1.45 -22.01 16 10 C -0.09 -2.65 4.84 30.60 0.15 -2.50 16 11 C -0.09 -3.21 5.04 30.60 0.15 -3.06 16 12 C 0.02 1.11 4.97 29.85 0.15 1.26 16 13 C -0.54 -30.11 9.11 25.60 0.23 -29.88 16 14 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 17 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.11 -0.90 5.03 30.61 0.15 -0.75 16 22 C -0.08 -0.82 5.17 29.74 0.15 -0.67 16 23 C -0.09 -1.40 5.52 -19.86 -0.11 -1.51 16 24 C -0.12 -1.73 9.61 22.36 0.21 -1.52 16 25 C -0.13 -1.80 10.05 22.20 0.22 -1.58 16 26 C -0.13 -2.12 10.05 22.20 0.22 -1.90 16 27 C -0.13 -2.58 9.61 22.36 0.21 -2.37 16 28 C -0.09 -1.70 5.43 -19.86 -0.11 -1.80 16 29 C -0.08 -1.56 4.20 29.73 0.12 -1.44 16 30 H 0.43 3.34 8.48 -92.71 -0.79 2.55 16 31 H 0.35 9.36 8.58 -89.70 -0.77 8.59 16 32 H 0.35 7.74 9.06 -89.69 -0.81 6.93 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 2.06 7.75 -2.39 -0.02 2.04 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.12 0.51 8.10 -2.39 -0.02 0.49 16 42 H 0.12 0.55 8.12 -2.39 -0.02 0.54 16 43 H 0.07 0.85 7.31 -2.39 -0.02 0.83 16 44 H 0.14 1.26 8.05 -2.91 -0.02 1.24 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 47 H 0.12 2.23 8.05 -2.91 -0.02 2.21 16 48 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 1.82 6.48 -2.38 -0.02 1.81 16 Total: -1.00 -77.68 402.30 1.51 -76.17 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -1.38 Total: 21.88 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 3.90 Total: -22.94 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -2.99 Total: -104.18 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.04 Total: -16.91 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.68 1.51 -76.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.061 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds