Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48492 * 109.47317 * 240.00489 * 3 2 1 5 5 H 1.48505 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47472 * 119.99913 * 3 2 1 7 7 C 1.39008 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00523 * 197.18286 * 7 2 1 9 9 N 1.36892 * 119.99890 * 17.18907 * 7 2 1 10 10 C 1.38216 * 125.62352 * 219.17856 * 9 7 2 11 11 C 1.46886 * 125.43247 * 0.02562 * 10 9 7 12 12 O 1.21665 * 120.00108 * 334.03743 * 11 10 9 13 13 N 1.34776 * 119.99887 * 154.03749 * 11 10 9 14 14 C 1.46921 * 120.63069 * 358.51821 * 13 11 10 15 15 C 1.52761 * 109.01343 * 233.58436 * 14 13 11 16 16 C 1.53043 * 109.38152 * 305.59093 * 15 14 13 17 17 C 1.52995 * 109.45996 * 181.25598 * 16 15 14 18 18 C 1.53004 * 109.47060 * 64.93446 * 17 16 15 19 19 N 1.46899 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.53043 * 109.53784 * 61.23387 * 16 15 14 21 21 C 1.46930 * 120.63115 * 178.80141 * 13 11 10 22 22 C 1.36120 * 109.12552 * 180.02562 * 10 9 7 23 23 C 1.41697 * 107.74974 * 0.02562 * 22 10 9 24 24 C 1.40027 * 133.34272 * 179.97438 * 23 22 10 25 25 C 1.36579 * 119.82711 * 180.02562 * 24 23 22 26 26 C 1.38856 * 120.59728 * 359.97438 * 25 24 23 27 27 C 1.37841 * 120.63762 * 0.02562 * 26 25 24 28 28 C 1.37843 * 125.62125 * 39.20226 * 9 7 2 29 29 H 0.97000 * 120.00071 * 354.95447 * 1 2 3 30 30 H 1.09004 * 109.58562 * 353.41956 * 14 13 11 31 31 H 1.09004 * 109.58433 * 113.84404 * 14 13 11 32 32 H 1.08997 * 109.56879 * 185.55125 * 15 14 13 33 33 H 1.08997 * 109.35935 * 65.49706 * 15 14 13 34 34 H 1.09006 * 109.46045 * 301.21671 * 16 15 14 35 35 H 1.09002 * 109.47588 * 184.92805 * 17 16 15 36 36 H 1.08995 * 109.47540 * 304.92936 * 17 16 15 37 37 H 1.09009 * 109.46708 * 299.99508 * 18 17 16 38 38 H 1.08997 * 109.47405 * 59.99922 * 18 17 16 39 39 H 1.00899 * 111.00026 * 56.04696 * 19 18 17 40 40 H 1.00902 * 111.00125 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.49660 * 178.68010 * 20 16 15 42 42 H 1.09001 * 109.52251 * 58.60734 * 20 16 15 43 43 H 1.09005 * 109.58377 * 246.15446 * 21 13 11 44 44 H 1.08996 * 109.58439 * 6.43658 * 21 13 11 45 45 H 1.07999 * 126.11829 * 180.02562 * 22 10 9 46 46 H 1.08003 * 120.08308 * 359.72927 * 24 23 22 47 47 H 1.08000 * 119.69379 * 179.97438 * 25 24 23 48 48 H 1.08003 * 119.67574 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.08996 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1011 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0086 -1.2038 -0.0005 8 1 3.0525 -1.2248 0.2757 9 7 1.3701 -2.3627 -0.3514 10 6 1.5504 -3.5946 0.2487 11 6 2.4597 -3.8714 1.3686 12 8 3.4403 -3.1727 1.5430 13 7 2.2078 -4.8994 2.2030 14 6 1.0105 -5.7322 2.0246 15 6 0.2334 -5.7745 3.3391 16 6 1.1618 -6.2403 4.4632 17 6 0.3774 -6.3134 5.7747 18 6 -0.7009 -7.3933 5.6645 19 7 -1.4537 -7.4639 6.9240 20 6 2.3184 -5.2497 4.6153 21 6 3.1220 -5.2049 3.3119 22 6 0.7508 -4.5104 -0.3636 23 6 0.0363 -3.8428 -1.3891 24 6 -0.9117 -4.2630 -2.3301 25 6 -1.4357 -3.3638 -3.2146 26 6 -1.0374 -2.0338 -3.1899 27 6 -0.1057 -1.5965 -2.2730 28 6 0.4417 -2.4936 -1.3618 29 1 -0.4850 0.8368 0.0739 30 1 0.3815 -5.3052 1.2435 31 1 1.3070 -6.7434 1.7459 32 1 -0.6025 -6.4678 3.2469 33 1 -0.1435 -4.7778 3.5683 34 1 1.5579 -7.2267 4.2217 35 1 1.0564 -6.5600 6.5910 36 1 -0.0922 -5.3497 5.9714 37 1 -1.3800 -7.1466 4.8483 38 1 -0.2313 -8.3570 5.4679 39 1 -1.8454 -6.5650 7.1621 40 1 -2.1727 -8.1702 6.8764 41 1 2.9663 -5.5695 5.4314 42 1 1.9222 -4.2578 4.8327 43 1 3.5941 -6.1723 3.1403 44 1 3.8871 -4.4315 3.3782 45 1 0.6747 -5.5580 -0.1127 46 1 -1.2241 -5.2964 -2.3595 47 1 -2.1664 -3.6903 -3.9397 48 1 -1.4618 -1.3354 -3.8960 49 1 0.1974 -0.5600 -2.2614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580056118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = 28.764813 kcal Electronic energy + Delta-G solvation = -30372.149746 eV Core-core repulsion = 26492.317832 eV Total energy + Delta-G solvation = -3879.831914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67302 -39.36678 -37.56770 -35.85711 -35.39388 -33.82238 -32.86708 -31.31866 -30.53027 -28.97470 -28.76450 -27.75186 -25.00419 -24.71830 -23.20442 -22.74063 -21.40142 -20.84352 -20.21535 -19.86930 -18.82519 -17.73634 -16.28497 -15.95661 -15.90539 -15.40851 -15.39479 -14.98317 -14.84707 -14.65253 -14.45057 -14.00367 -13.69486 -13.59688 -13.33685 -13.15979 -12.86310 -12.85186 -12.60171 -12.39802 -12.23741 -11.80345 -11.74261 -11.59523 -11.34174 -11.25044 -11.16958 -11.10473 -10.76838 -10.74925 -10.60328 -10.32937 -10.29812 -10.04432 -9.72360 -9.20693 -9.07473 -8.93180 -8.57999 -8.24545 -7.13980 -6.81135 -6.58995 -4.42652 1.87179 2.77488 3.03686 3.04299 3.06664 3.15971 3.31378 3.84273 4.16706 4.27503 4.64214 4.66877 4.72373 4.77388 4.90241 5.08976 5.10716 5.18245 5.27572 5.42087 5.46012 5.50518 5.56535 5.59828 5.77183 5.82174 5.84611 5.96145 5.97010 6.02491 6.08652 6.10370 6.15384 6.16508 6.21820 6.31009 6.47214 6.56028 6.69000 6.83211 6.85550 6.97361 7.04855 7.10136 7.14574 7.18765 7.49820 7.58750 7.69367 7.82441 7.98192 8.11160 8.42161 8.74795 8.94944 9.32688 10.20906 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.003657 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.467166 B = 7654.780322 C = 8888.624009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.052 3.948 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.343 4.343 8 H 0.120 0.880 9 N -0.227 5.227 10 C -0.017 4.017 11 C 0.594 3.406 12 O -0.540 6.540 13 N -0.607 5.607 14 C 0.072 3.928 15 C -0.131 4.131 16 C -0.085 4.085 17 C -0.112 4.112 18 C 0.058 3.942 19 N -0.855 5.855 20 C -0.127 4.127 21 C 0.116 3.884 22 C -0.226 4.226 23 C -0.121 4.121 24 C -0.095 4.095 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.046 4.046 28 C 0.084 3.916 29 H 0.282 0.718 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.340 0.660 40 H 0.339 0.661 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.140 0.860 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -11.009 6.387 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.161 4.161 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.138 0.862 9 N 0.113 4.887 10 C -0.135 4.135 11 C 0.385 3.615 12 O -0.417 6.417 13 N -0.342 5.342 14 C -0.050 4.050 15 C -0.169 4.169 16 C -0.104 4.104 17 C -0.150 4.150 18 C -0.072 4.072 19 N -0.384 5.384 20 C -0.166 4.166 21 C -0.006 4.006 22 C -0.253 4.253 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.173 4.173 26 C -0.177 4.177 27 C -0.066 4.066 28 C -0.030 4.030 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.157 0.843 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.505 -10.347 6.883 12.518 hybrid contribution -0.713 1.050 -0.312 1.307 sum -2.218 -9.297 6.571 11.599 Atomic orbital electron populations 1.69965 1.06473 1.29542 1.39111 1.25716 0.95476 1.00786 0.94098 0.85903 0.79400 0.79086 0.80082 1.18785 1.20188 1.18934 1.20093 0.96849 0.82178 1.48040 0.86208 1.39933 1.25722 1.05296 1.17745 1.19594 1.05147 0.88857 0.99900 1.17264 0.84300 0.79017 0.80944 1.90723 1.29510 1.47994 1.73504 1.47644 1.24913 1.31835 1.29771 1.22649 0.87629 0.95061 0.99637 1.21973 0.97975 1.02089 0.94866 1.21130 0.95576 0.99114 0.94596 1.21607 0.97446 0.98436 0.97519 1.21889 0.95741 0.99616 0.90000 1.58756 1.32850 1.11823 1.34986 1.21946 0.97212 1.00109 0.97292 1.21461 0.92642 1.01282 0.85244 1.20572 1.03881 0.98140 1.02719 1.17952 1.01542 0.93286 0.99768 1.20006 0.97612 0.98019 0.95735 1.20266 1.02438 0.93894 1.00721 1.20528 1.00612 0.95652 1.00887 1.20108 0.95655 0.97993 0.92844 1.18145 0.98055 0.93989 0.92860 0.90731 0.85107 0.92131 0.90984 0.91446 0.91087 0.91315 0.92132 0.95025 0.91209 0.84807 0.84868 0.91059 0.91444 0.92093 0.89108 0.84267 0.87915 0.88029 0.87770 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.53 10.94 55.50 0.61 -20.92 16 2 C 0.05 1.33 4.45 -17.47 -0.08 1.25 16 3 Si 0.93 19.71 29.59 -169.99 -5.03 14.68 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.34 -9.36 9.09 -15.01 -0.14 -9.49 16 8 H 0.12 3.36 6.79 -52.49 -0.36 3.01 16 9 N -0.23 -6.04 2.83 -56.08 -0.16 -6.20 16 10 C -0.02 -0.40 6.43 -82.25 -0.53 -0.93 16 11 C 0.59 13.28 7.52 -12.76 -0.10 13.19 16 12 O -0.54 -13.63 14.71 5.22 0.08 -13.55 16 13 N -0.61 -10.45 2.98 -174.50 -0.52 -10.97 16 14 C 0.07 1.03 5.24 -3.94 -0.02 1.01 16 15 C -0.13 -1.58 5.13 -26.83 -0.14 -1.72 16 16 C -0.09 -0.89 2.15 -90.58 -0.19 -1.09 16 17 C -0.11 -1.08 4.94 -26.73 -0.13 -1.21 16 18 C 0.06 0.51 6.54 -3.82 -0.03 0.48 16 19 N -0.86 -7.02 9.62 -10.37 -0.10 -7.12 16 20 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 21 C 0.12 1.67 6.44 -3.71 -0.02 1.64 16 22 C -0.23 -4.79 8.47 -39.02 -0.33 -5.12 16 23 C -0.12 -2.76 6.16 -106.90 -0.66 -3.42 16 24 C -0.09 -1.88 10.06 -39.51 -0.40 -2.28 16 25 C -0.15 -2.94 9.97 -39.95 -0.40 -3.34 16 26 C -0.16 -3.21 10.02 -39.50 -0.40 -3.61 16 27 C -0.05 -1.11 8.57 -39.41 -0.34 -1.45 16 28 C 0.08 2.13 6.07 -83.84 -0.51 1.62 16 29 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.13 2.11 3.46 -51.93 -0.18 1.93 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.28 6.53 -51.92 -0.34 -0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.34 2.55 8.99 -39.29 -0.35 2.20 16 40 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 45 H 0.14 2.41 5.67 -52.49 -0.30 2.11 16 46 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 47 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 49 H 0.11 2.78 6.48 -52.49 -0.34 2.44 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -30.67 380.89 -11.06 -41.73 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.13 Total: 12.72 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -4.54 Total: -16.12 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.17 Total: -45.21 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.67 -11.06 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.499 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds