Wall clock time and date at job start Sat Apr 11 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48492 * 109.47317 * 240.00489 * 3 2 1 5 5 H 1.48505 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47472 * 119.99913 * 3 2 1 7 7 C 1.39008 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00523 * 197.18286 * 7 2 1 9 9 N 1.36892 * 119.99890 * 17.18907 * 7 2 1 10 10 C 1.38216 * 125.62352 * 219.17856 * 9 7 2 11 11 C 1.46886 * 125.43247 * 0.02562 * 10 9 7 12 12 O 1.21665 * 120.00108 * 334.03743 * 11 10 9 13 13 N 1.34776 * 119.99887 * 154.03749 * 11 10 9 14 14 C 1.46921 * 120.63069 * 358.51821 * 13 11 10 15 15 C 1.52761 * 109.01343 * 233.58436 * 14 13 11 16 16 C 1.53043 * 109.38152 * 305.59093 * 15 14 13 17 17 C 1.52995 * 109.45996 * 181.25598 * 16 15 14 18 18 C 1.53004 * 109.47060 * 64.93446 * 17 16 15 19 19 N 1.46899 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.53043 * 109.53784 * 61.23387 * 16 15 14 21 21 C 1.46930 * 120.63115 * 178.80141 * 13 11 10 22 22 C 1.36120 * 109.12552 * 180.02562 * 10 9 7 23 23 C 1.41697 * 107.74974 * 0.02562 * 22 10 9 24 24 C 1.40027 * 133.34272 * 179.97438 * 23 22 10 25 25 C 1.36579 * 119.82711 * 180.02562 * 24 23 22 26 26 C 1.38856 * 120.59728 * 359.97438 * 25 24 23 27 27 C 1.37841 * 120.63762 * 0.02562 * 26 25 24 28 28 C 1.37843 * 125.62125 * 39.20226 * 9 7 2 29 29 H 0.97000 * 120.00071 * 354.95447 * 1 2 3 30 30 H 1.09004 * 109.58562 * 353.41956 * 14 13 11 31 31 H 1.09004 * 109.58433 * 113.84404 * 14 13 11 32 32 H 1.08997 * 109.56879 * 185.55125 * 15 14 13 33 33 H 1.08997 * 109.35935 * 65.49706 * 15 14 13 34 34 H 1.09006 * 109.46045 * 301.21671 * 16 15 14 35 35 H 1.09002 * 109.47588 * 184.92805 * 17 16 15 36 36 H 1.08995 * 109.47540 * 304.92936 * 17 16 15 37 37 H 1.09009 * 109.46708 * 299.99508 * 18 17 16 38 38 H 1.08997 * 109.47405 * 59.99922 * 18 17 16 39 39 H 1.00899 * 111.00026 * 56.04696 * 19 18 17 40 40 H 1.00902 * 111.00125 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.49660 * 178.68010 * 20 16 15 42 42 H 1.09001 * 109.52251 * 58.60734 * 20 16 15 43 43 H 1.09005 * 109.58377 * 246.15446 * 21 13 11 44 44 H 1.08996 * 109.58439 * 6.43658 * 21 13 11 45 45 H 1.07999 * 126.11829 * 180.02562 * 22 10 9 46 46 H 1.08003 * 120.08308 * 359.72927 * 24 23 22 47 47 H 1.08000 * 119.69379 * 179.97438 * 25 24 23 48 48 H 1.08003 * 119.67574 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.08996 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1011 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0086 -1.2038 -0.0005 8 1 3.0525 -1.2248 0.2757 9 7 1.3701 -2.3627 -0.3514 10 6 1.5504 -3.5946 0.2487 11 6 2.4597 -3.8714 1.3686 12 8 3.4403 -3.1727 1.5430 13 7 2.2078 -4.8994 2.2030 14 6 1.0105 -5.7322 2.0246 15 6 0.2334 -5.7745 3.3391 16 6 1.1618 -6.2403 4.4632 17 6 0.3774 -6.3134 5.7747 18 6 -0.7009 -7.3933 5.6645 19 7 -1.4537 -7.4639 6.9240 20 6 2.3184 -5.2497 4.6153 21 6 3.1220 -5.2049 3.3119 22 6 0.7508 -4.5104 -0.3636 23 6 0.0363 -3.8428 -1.3891 24 6 -0.9117 -4.2630 -2.3301 25 6 -1.4357 -3.3638 -3.2146 26 6 -1.0374 -2.0338 -3.1899 27 6 -0.1057 -1.5965 -2.2730 28 6 0.4417 -2.4936 -1.3618 29 1 -0.4850 0.8368 0.0739 30 1 0.3815 -5.3052 1.2435 31 1 1.3070 -6.7434 1.7459 32 1 -0.6025 -6.4678 3.2469 33 1 -0.1435 -4.7778 3.5683 34 1 1.5579 -7.2267 4.2217 35 1 1.0564 -6.5600 6.5910 36 1 -0.0922 -5.3497 5.9714 37 1 -1.3800 -7.1466 4.8483 38 1 -0.2313 -8.3570 5.4679 39 1 -1.8454 -6.5650 7.1621 40 1 -2.1727 -8.1702 6.8764 41 1 2.9663 -5.5695 5.4314 42 1 1.9222 -4.2578 4.8327 43 1 3.5941 -6.1723 3.1403 44 1 3.8871 -4.4315 3.3782 45 1 0.6747 -5.5580 -0.1127 46 1 -1.2241 -5.2964 -2.3595 47 1 -2.1664 -3.6903 -3.9397 48 1 -1.4618 -1.3354 -3.8960 49 1 0.1974 -0.5600 -2.2614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580056118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:50 Heat of formation + Delta-G solvation = 10.050032 kcal Electronic energy + Delta-G solvation = -30372.961280 eV Core-core repulsion = 26492.317832 eV Total energy + Delta-G solvation = -3880.643448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -42.34457 -40.76983 -38.89515 -37.48364 -36.49433 -35.54348 -34.02078 -32.71032 -32.02590 -30.66921 -30.02566 -29.09616 -26.85933 -25.92206 -24.36534 -24.06806 -22.77616 -22.17467 -21.55296 -21.31216 -20.28055 -19.44702 -17.79551 -17.53931 -17.18476 -16.63877 -16.63148 -16.40448 -16.28944 -16.04400 -15.44777 -15.31716 -15.14374 -14.98856 -14.59756 -14.54097 -14.43741 -14.34638 -13.94675 -13.70988 -13.59817 -13.53824 -13.14056 -12.98119 -12.81128 -12.62753 -12.36034 -12.23184 -12.19462 -12.07234 -11.94931 -11.69715 -11.48759 -11.30034 -11.20763 -10.99829 -10.80468 -10.27739 -9.65842 -9.53477 -8.93665 -8.61766 -8.33883 -6.40155 0.18496 1.10565 1.26132 1.33400 1.37512 1.45229 1.83855 2.11402 2.44248 2.83368 3.05561 3.37951 3.55253 3.67080 3.81079 3.94304 4.02618 4.14971 4.25309 4.31011 4.34280 4.43608 4.48817 4.51919 4.57153 4.61171 4.70526 4.72875 4.83418 4.85387 4.89139 4.94029 5.00579 5.08825 5.10930 5.13275 5.15177 5.18167 5.22296 5.34884 5.36491 5.46916 5.53810 5.66910 5.77900 5.92075 5.98216 6.23986 6.26329 6.27940 6.46859 6.57397 6.60497 6.96539 7.25972 7.46950 8.33421 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.003657 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.467166 B = 7654.780322 C = 8888.624009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.018 3.982 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.263 5.263 10 C -0.049 4.049 11 C 0.582 3.418 12 O -0.587 6.587 13 N -0.596 5.596 14 C 0.067 3.933 15 C -0.124 4.124 16 C -0.076 4.076 17 C -0.105 4.105 18 C 0.061 3.939 19 N -0.863 5.863 20 C -0.121 4.121 21 C 0.111 3.889 22 C -0.196 4.196 23 C -0.147 4.147 24 C -0.085 4.085 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.091 4.091 28 C 0.057 3.943 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.342 0.658 40 H 0.349 0.651 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.183 0.817 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.132 0.868 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -14.514 6.100 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.193 1.193 7 C -0.505 4.505 8 H 0.110 0.890 9 N 0.075 4.925 10 C -0.165 4.165 11 C 0.373 3.627 12 O -0.468 6.468 13 N -0.328 5.328 14 C -0.054 4.054 15 C -0.162 4.162 16 C -0.095 4.095 17 C -0.143 4.143 18 C -0.070 4.070 19 N -0.393 5.393 20 C -0.159 4.159 21 C -0.011 4.011 22 C -0.223 4.223 23 C -0.151 4.151 24 C -0.103 4.103 25 C -0.174 4.174 26 C -0.159 4.159 27 C -0.111 4.111 28 C -0.057 4.057 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.200 0.800 46 H 0.164 0.836 47 H 0.165 0.835 48 H 0.150 0.850 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.442 -13.909 6.627 15.787 hybrid contribution -0.222 1.916 -0.265 1.947 sum -3.664 -11.993 6.361 14.061 Atomic orbital electron populations 1.70030 1.07484 1.30180 1.40405 1.26441 0.96218 1.03158 0.93264 0.85054 0.78389 0.75681 0.79725 1.18499 1.18332 1.19333 1.19928 0.96233 0.83944 1.50443 0.88961 1.40091 1.27363 1.05745 1.19320 1.20216 1.06311 0.88862 1.01121 1.17430 0.83746 0.79985 0.81571 1.90680 1.31346 1.50027 1.74797 1.47781 1.25900 1.30262 1.28896 1.22831 0.86334 0.95818 1.00404 1.21932 0.98810 1.01262 0.94234 1.21082 0.94551 0.99402 0.94458 1.21515 0.97664 0.98268 0.96898 1.21847 0.95452 0.99434 0.90235 1.58752 1.33446 1.12374 1.34774 1.21917 0.98006 0.99419 0.96580 1.21716 0.92156 1.01809 0.85416 1.21100 1.01222 0.99474 1.00465 1.18453 1.03013 0.92376 1.01291 1.20504 0.95580 1.00275 0.93970 1.20760 1.02668 0.92750 1.01185 1.20975 0.98303 0.97314 0.99357 1.20170 0.98558 0.97209 0.95165 1.18724 0.98088 0.95847 0.92999 0.90542 0.87112 0.88318 0.88195 0.94488 0.88698 0.91096 0.93487 0.94911 0.90382 0.84553 0.83787 0.88461 0.94201 0.88821 0.91843 0.79995 0.83639 0.83470 0.85025 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.29 10.94 21.67 0.24 -47.05 16 2 C 0.02 1.01 4.45 84.95 0.38 1.38 16 3 Si 0.99 43.05 29.59 68.60 2.03 45.08 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.38 -22.39 9.09 84.09 0.76 -21.62 16 8 H 0.09 5.76 6.79 -2.91 -0.02 5.74 16 9 N -0.26 -14.92 2.83 -331.35 -0.94 -15.86 16 10 C -0.05 -2.44 6.43 39.91 0.26 -2.18 16 11 C 0.58 27.41 7.52 86.51 0.65 28.06 16 12 O -0.59 -32.08 14.71 -4.24 -0.06 -32.14 16 13 N -0.60 -20.48 2.98 -824.22 -2.45 -22.93 16 14 C 0.07 1.74 5.24 86.22 0.45 2.20 16 15 C -0.12 -2.72 5.13 30.53 0.16 -2.56 16 16 C -0.08 -1.38 2.15 -10.77 -0.02 -1.40 16 17 C -0.11 -1.77 4.94 30.59 0.15 -1.62 16 18 C 0.06 0.87 6.54 86.30 0.56 1.43 16 19 N -0.86 -12.10 9.62 -186.71 -1.80 -13.89 16 20 C -0.12 -2.74 5.36 30.67 0.16 -2.58 16 21 C 0.11 3.11 6.44 86.36 0.56 3.66 16 22 C -0.20 -8.17 8.47 22.63 0.19 -7.98 16 23 C -0.15 -6.57 6.16 -21.34 -0.13 -6.70 16 24 C -0.08 -3.05 10.06 22.32 0.22 -2.83 16 25 C -0.15 -5.32 9.97 22.03 0.22 -5.10 16 26 C -0.14 -5.53 10.02 22.32 0.22 -5.30 16 27 C -0.09 -4.50 8.57 22.38 0.19 -4.31 16 28 C 0.06 3.04 6.07 39.06 0.24 3.27 16 29 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.11 3.36 3.46 -2.38 -0.01 3.35 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.67 6.50 -2.39 -0.02 1.65 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.03 0.46 6.53 -2.38 -0.02 0.45 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.34 4.54 8.99 -89.69 -0.81 3.73 16 40 H 0.35 3.73 9.08 -89.69 -0.81 2.91 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.06 2.15 7.00 -2.39 -0.02 2.13 16 45 H 0.18 5.74 5.67 -2.91 -0.02 5.72 16 46 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 48 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 49 H 0.09 4.72 6.48 -2.91 -0.02 4.70 16 Total: -1.00 -75.15 380.89 1.62 -73.53 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.63 Total: 37.45 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.23 Total: -24.18 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.95 Total: -99.73 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.06 Total: -32.14 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.15 1.62 -73.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.579 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds