Wall clock time and date at job start Sat Apr 11 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48505 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47176 * 299.99983 * 3 2 1 6 6 H 1.48503 * 109.47175 * 60.00222 * 3 2 1 7 7 C 1.39012 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00541 * 184.39240 * 7 2 1 9 9 N 1.36890 * 119.99471 * 4.39365 * 7 2 1 10 10 C 1.38214 * 125.62195 * 130.30553 * 9 7 2 11 11 C 1.46887 * 125.43240 * 359.93744 * 10 9 7 12 12 O 1.21672 * 119.99964 * 184.96826 * 11 10 9 13 13 N 1.34780 * 120.00548 * 4.69821 * 11 10 9 14 14 C 1.46497 * 120.00516 * 174.61643 * 13 11 10 15 15 H 1.09001 * 109.47063 * 328.66733 * 14 13 11 16 16 C 1.53006 * 109.46940 * 88.66254 * 14 13 11 17 17 C 1.53001 * 109.46902 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47136 * 300.00380 * 17 16 14 19 19 H 1.08996 * 109.47156 * 299.99547 * 18 17 16 20 20 C 1.53008 * 109.46875 * 180.02562 * 18 17 16 21 21 N 1.46899 * 109.46935 * 64.99643 * 20 18 17 22 22 C 1.52992 * 109.47420 * 60.00083 * 18 17 16 23 23 C 1.52998 * 109.47002 * 208.66239 * 14 13 11 24 24 C 1.36119 * 109.13098 * 180.20599 * 10 9 7 25 25 C 1.41703 * 107.74653 * 359.61070 * 24 10 9 26 26 C 1.40018 * 133.35013 * 180.10032 * 25 24 10 27 27 C 1.36579 * 119.83300 * 180.30477 * 26 25 24 28 28 C 1.38857 * 120.59646 * 0.02562 * 27 26 25 29 29 C 1.37845 * 120.63485 * 359.97438 * 28 27 26 30 30 C 1.37837 * 125.62038 * 310.25868 * 9 7 2 31 31 H 0.97000 * 119.99604 * 5.00645 * 1 2 3 32 32 H 0.97003 * 119.99430 * 354.61424 * 13 11 10 33 33 H 1.08993 * 109.47140 * 299.99815 * 16 14 13 34 34 H 1.09001 * 109.46852 * 60.00350 * 16 14 13 35 35 H 1.08997 * 109.47115 * 180.02562 * 17 16 14 36 36 H 1.09009 * 109.47029 * 60.00142 * 17 16 14 37 37 H 1.08999 * 109.46727 * 184.99833 * 20 18 17 38 38 H 1.09000 * 109.46919 * 304.99730 * 20 18 17 39 39 H 1.00901 * 111.00135 * 56.04830 * 21 20 18 40 40 H 1.00902 * 110.99625 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47409 * 179.97438 * 22 18 17 42 42 H 1.09003 * 109.47704 * 59.99808 * 22 18 17 43 43 H 1.08996 * 109.47487 * 299.99717 * 23 14 13 44 44 H 1.09005 * 109.47159 * 60.00367 * 23 14 13 45 45 H 1.08001 * 126.12363 * 179.73929 * 24 10 9 46 46 H 1.08004 * 120.08316 * 0.28551 * 26 25 24 47 47 H 1.07996 * 119.70221 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.68224 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.09199 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8888 2.3964 -1.2124 6 1 1.8888 2.3964 1.2125 7 6 2.0086 -1.2038 0.0005 8 1 3.0862 -1.2052 0.0722 9 7 1.3271 -2.3876 -0.0898 10 6 1.6117 -3.4152 -0.9692 11 6 2.6957 -3.4122 -1.9603 12 8 2.8023 -4.3333 -2.7481 13 7 3.5690 -2.3864 -2.0009 14 6 4.7181 -2.4380 -2.9082 15 1 5.0354 -3.4732 -3.0342 16 6 4.3214 -1.8572 -4.2670 17 6 5.5217 -1.9105 -5.2144 18 6 6.6725 -1.0918 -4.6260 19 1 6.3548 -0.0568 -4.5001 20 6 7.8726 -1.1446 -5.5738 21 7 7.5282 -0.4791 -6.8373 22 6 7.0691 -1.6725 -3.2673 23 6 5.8693 -1.6196 -2.3202 24 6 0.7234 -4.4280 -0.7742 25 6 -0.1524 -4.0394 0.2698 26 6 -1.2416 -4.6614 0.8922 27 6 -1.9110 -4.0170 1.8932 28 6 -1.5219 -2.7479 2.3007 29 6 -0.4528 -2.1152 1.7032 30 6 0.2446 -2.7516 0.6820 31 1 -0.4849 0.8369 -0.0733 32 1 3.4367 -1.6140 -1.4293 33 1 3.5013 -2.4402 -4.6859 34 1 4.0041 -0.8220 -4.1410 35 1 5.2392 -1.4963 -6.1823 36 1 5.8394 -2.9456 -5.3404 37 1 8.7206 -0.6365 -5.1147 38 1 8.1348 -2.1841 -5.7704 39 1 7.2194 0.4677 -6.6749 40 1 8.3053 -0.5002 -7.4806 41 1 7.8893 -1.0896 -2.8484 42 1 7.3869 -2.7076 -3.3933 43 1 5.5520 -0.5845 -2.1943 44 1 6.1519 -2.0334 -1.3521 45 1 0.6930 -5.3615 -1.3165 46 1 -1.5518 -5.6481 0.5812 47 1 -2.7506 -4.4988 2.3720 48 1 -2.0616 -2.2520 3.0941 49 1 -0.1575 -1.1283 2.0274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580056296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:57 Heat of formation + Delta-G solvation = -0.372028 kcal Electronic energy + Delta-G solvation = -30129.420221 eV Core-core repulsion = 26248.324838 eV Total energy + Delta-G solvation = -3881.095382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.49306 -39.35479 -37.91172 -35.89781 -35.15659 -33.67004 -32.85979 -30.73376 -30.69345 -29.62103 -28.76873 -27.78182 -25.07516 -24.59517 -22.79872 -22.53738 -21.00570 -20.85001 -19.99639 -19.91141 -19.10356 -18.12485 -16.49532 -16.23758 -15.70175 -15.57089 -14.95696 -14.87780 -14.71204 -14.52795 -14.37945 -14.17689 -13.87440 -13.55421 -13.14361 -12.99860 -12.90595 -12.77309 -12.45323 -12.26755 -12.16060 -11.94304 -11.89382 -11.68097 -11.58028 -11.23175 -11.05739 -10.92426 -10.75708 -10.65532 -10.63340 -10.30436 -10.15224 -10.07477 -9.73600 -9.33270 -9.27124 -8.89961 -8.60394 -8.41579 -7.17384 -6.84608 -6.56750 -4.76634 1.87816 2.76183 2.87720 2.93070 2.94809 3.18310 3.65628 3.83601 4.28174 4.29955 4.54122 4.61195 4.65804 4.79035 4.90435 5.07506 5.09284 5.32257 5.37553 5.47998 5.50551 5.56792 5.61397 5.67432 5.76274 5.85177 5.90546 5.99155 6.00421 6.11653 6.17473 6.20096 6.26641 6.40056 6.45448 6.50916 6.58848 6.61972 6.72881 6.82268 6.87663 6.93575 7.12585 7.14424 7.16169 7.17485 7.50267 7.60236 7.68204 7.93062 7.96291 8.28622 8.32995 8.66740 9.02132 9.27948 10.11745 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003374 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.216710 B = 8296.983963 C = 9726.375850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.062 3.938 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.376 4.376 8 H 0.106 0.894 9 N -0.266 5.266 10 C -0.015 4.015 11 C 0.597 3.403 12 O -0.558 6.558 13 N -0.727 5.727 14 C 0.145 3.855 15 H 0.083 0.917 16 C -0.131 4.131 17 C -0.100 4.100 18 C -0.088 4.088 19 H 0.068 0.932 20 C 0.066 3.934 21 N -0.850 5.850 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.164 4.164 25 C -0.136 4.136 26 C -0.088 4.088 27 C -0.160 4.160 28 C -0.149 4.149 29 C -0.050 4.050 30 C 0.111 3.889 31 H 0.282 0.718 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.339 0.661 40 H 0.338 0.662 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.132 0.868 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 2.394 -4.423 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.152 4.152 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.503 4.503 8 H 0.123 0.877 9 N 0.069 4.931 10 C -0.129 4.129 11 C 0.386 3.614 12 O -0.438 6.438 13 N -0.385 5.385 14 C 0.040 3.960 15 H 0.101 0.899 16 C -0.170 4.170 17 C -0.138 4.138 18 C -0.107 4.107 19 H 0.086 0.914 20 C -0.065 4.065 21 N -0.379 5.379 22 C -0.146 4.146 23 C -0.165 4.165 24 C -0.192 4.192 25 C -0.140 4.140 26 C -0.107 4.107 27 C -0.179 4.179 28 C -0.170 4.170 29 C -0.069 4.069 30 C -0.004 4.004 31 H 0.093 0.907 32 H 0.259 0.741 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.150 0.850 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.534 1.678 -4.979 11.772 hybrid contribution 0.862 2.025 0.449 2.246 sum 11.396 3.703 -4.530 12.810 Atomic orbital electron populations 1.69941 1.06256 1.29423 1.39049 1.25732 0.95686 1.00342 0.93450 0.85929 0.79977 0.80554 0.78923 1.18440 1.19608 1.19593 1.19487 0.92007 0.81632 1.57141 0.87712 1.39896 1.21342 1.10943 1.20898 1.20184 1.01541 0.93546 0.97649 1.17271 0.80462 0.81475 0.82167 1.90709 1.74372 1.37305 1.41387 1.46803 1.25781 1.22562 1.43397 1.20877 0.85645 1.00267 0.89233 0.89859 1.21967 0.98408 1.01360 0.95249 1.21424 0.93905 0.99792 0.98656 1.21226 0.95287 1.00213 0.93968 0.91353 1.21856 0.95789 0.99304 0.89553 1.58687 1.42100 1.23421 1.13674 1.21473 0.97244 1.01413 0.94511 1.21787 0.94919 1.00821 0.98962 1.20408 0.97393 0.99569 1.01846 1.18067 0.99540 0.95522 1.00915 1.20048 0.95329 0.98598 0.96726 1.20269 1.01274 0.96268 1.00098 1.20584 0.98610 0.95915 1.01871 1.20104 0.94389 0.98272 0.94169 1.18344 0.93568 0.93038 0.95438 0.90661 0.74086 0.91303 0.92059 0.90876 0.92198 0.95836 0.91023 0.84839 0.84956 0.91903 0.91594 0.91462 0.91253 0.85032 0.87815 0.87981 0.87745 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.09 10.47 55.50 0.58 -19.51 16 2 C 0.06 1.42 5.16 -17.47 -0.09 1.33 16 3 Si 0.92 17.26 29.56 -169.99 -5.02 12.24 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.38 -8.83 7.75 -15.01 -0.12 -8.95 16 8 H 0.11 2.29 6.24 -52.49 -0.33 1.97 16 9 N -0.27 -6.62 2.81 -56.08 -0.16 -6.78 16 10 C -0.01 -0.36 6.77 -82.25 -0.56 -0.91 16 11 C 0.60 13.55 7.76 -12.76 -0.10 13.45 16 12 O -0.56 -13.43 16.51 5.21 0.09 -13.34 16 13 N -0.73 -14.06 4.98 -55.05 -0.27 -14.33 16 14 C 0.14 2.29 2.47 -67.93 -0.17 2.12 16 15 H 0.08 1.41 7.55 -51.93 -0.39 1.01 16 16 C -0.13 -1.97 5.53 -26.73 -0.15 -2.11 16 17 C -0.10 -1.22 5.09 -26.73 -0.14 -1.35 16 18 C -0.09 -0.90 2.33 -90.62 -0.21 -1.11 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 20 C 0.07 0.57 6.18 -3.82 -0.02 0.54 16 21 N -0.85 -6.91 9.08 -10.37 -0.09 -7.00 16 22 C -0.11 -1.11 5.20 -26.76 -0.14 -1.24 16 23 C -0.13 -1.62 5.41 -26.75 -0.14 -1.76 16 24 C -0.16 -3.90 10.55 -39.02 -0.41 -4.31 16 25 C -0.14 -3.23 6.16 -106.89 -0.66 -3.88 16 26 C -0.09 -1.83 10.06 -39.51 -0.40 -2.23 16 27 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16 28 C -0.15 -3.05 10.02 -39.50 -0.40 -3.44 16 29 C -0.05 -1.16 8.55 -39.41 -0.34 -1.50 16 30 C 0.11 2.77 6.03 -83.83 -0.51 2.26 16 31 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.41 8.09 4.40 -40.82 -0.18 7.91 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.91 7.75 -51.93 -0.40 0.50 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.34 2.50 8.99 -39.29 -0.35 2.14 16 40 H 0.34 2.16 9.08 -39.29 -0.36 1.80 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 46 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 47 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 49 H 0.12 2.80 6.81 -52.49 -0.36 2.44 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -28.11 388.48 -11.39 -39.49 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -7.42 Total: 20.00 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -4.94 Total: -16.61 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.06 Total: -47.63 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.02 Total: 12.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.11 -11.39 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.122 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds