Wall clock time and date at job start Sat Apr 11 2020 06:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48505 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47176 * 299.99983 * 3 2 1 6 6 H 1.48503 * 109.47175 * 60.00222 * 3 2 1 7 7 C 1.39012 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00541 * 184.39240 * 7 2 1 9 9 N 1.36890 * 119.99471 * 4.39365 * 7 2 1 10 10 C 1.38214 * 125.62195 * 130.30553 * 9 7 2 11 11 C 1.46887 * 125.43240 * 359.93744 * 10 9 7 12 12 O 1.21672 * 119.99964 * 184.96826 * 11 10 9 13 13 N 1.34780 * 120.00548 * 4.69821 * 11 10 9 14 14 C 1.46497 * 120.00516 * 174.61643 * 13 11 10 15 15 H 1.09001 * 109.47063 * 328.66733 * 14 13 11 16 16 C 1.53006 * 109.46940 * 88.66254 * 14 13 11 17 17 C 1.53001 * 109.46902 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47136 * 300.00380 * 17 16 14 19 19 H 1.08996 * 109.47156 * 299.99547 * 18 17 16 20 20 C 1.53008 * 109.46875 * 180.02562 * 18 17 16 21 21 N 1.46899 * 109.46935 * 64.99643 * 20 18 17 22 22 C 1.52992 * 109.47420 * 60.00083 * 18 17 16 23 23 C 1.52998 * 109.47002 * 208.66239 * 14 13 11 24 24 C 1.36119 * 109.13098 * 180.20599 * 10 9 7 25 25 C 1.41703 * 107.74653 * 359.61070 * 24 10 9 26 26 C 1.40018 * 133.35013 * 180.10032 * 25 24 10 27 27 C 1.36579 * 119.83300 * 180.30477 * 26 25 24 28 28 C 1.38857 * 120.59646 * 0.02562 * 27 26 25 29 29 C 1.37845 * 120.63485 * 359.97438 * 28 27 26 30 30 C 1.37837 * 125.62038 * 310.25868 * 9 7 2 31 31 H 0.97000 * 119.99604 * 5.00645 * 1 2 3 32 32 H 0.97003 * 119.99430 * 354.61424 * 13 11 10 33 33 H 1.08993 * 109.47140 * 299.99815 * 16 14 13 34 34 H 1.09001 * 109.46852 * 60.00350 * 16 14 13 35 35 H 1.08997 * 109.47115 * 180.02562 * 17 16 14 36 36 H 1.09009 * 109.47029 * 60.00142 * 17 16 14 37 37 H 1.08999 * 109.46727 * 184.99833 * 20 18 17 38 38 H 1.09000 * 109.46919 * 304.99730 * 20 18 17 39 39 H 1.00901 * 111.00135 * 56.04830 * 21 20 18 40 40 H 1.00902 * 110.99625 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47409 * 179.97438 * 22 18 17 42 42 H 1.09003 * 109.47704 * 59.99808 * 22 18 17 43 43 H 1.08996 * 109.47487 * 299.99717 * 23 14 13 44 44 H 1.09005 * 109.47159 * 60.00367 * 23 14 13 45 45 H 1.08001 * 126.12363 * 179.73929 * 24 10 9 46 46 H 1.08004 * 120.08316 * 0.28551 * 26 25 24 47 47 H 1.07996 * 119.70221 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.68224 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.09199 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8888 2.3964 -1.2124 6 1 1.8888 2.3964 1.2125 7 6 2.0086 -1.2038 0.0005 8 1 3.0862 -1.2052 0.0722 9 7 1.3271 -2.3876 -0.0898 10 6 1.6117 -3.4152 -0.9692 11 6 2.6957 -3.4122 -1.9603 12 8 2.8023 -4.3333 -2.7481 13 7 3.5690 -2.3864 -2.0009 14 6 4.7181 -2.4380 -2.9082 15 1 5.0354 -3.4732 -3.0342 16 6 4.3214 -1.8572 -4.2670 17 6 5.5217 -1.9105 -5.2144 18 6 6.6725 -1.0918 -4.6260 19 1 6.3548 -0.0568 -4.5001 20 6 7.8726 -1.1446 -5.5738 21 7 7.5282 -0.4791 -6.8373 22 6 7.0691 -1.6725 -3.2673 23 6 5.8693 -1.6196 -2.3202 24 6 0.7234 -4.4280 -0.7742 25 6 -0.1524 -4.0394 0.2698 26 6 -1.2416 -4.6614 0.8922 27 6 -1.9110 -4.0170 1.8932 28 6 -1.5219 -2.7479 2.3007 29 6 -0.4528 -2.1152 1.7032 30 6 0.2446 -2.7516 0.6820 31 1 -0.4849 0.8369 -0.0733 32 1 3.4367 -1.6140 -1.4293 33 1 3.5013 -2.4402 -4.6859 34 1 4.0041 -0.8220 -4.1410 35 1 5.2392 -1.4963 -6.1823 36 1 5.8394 -2.9456 -5.3404 37 1 8.7206 -0.6365 -5.1147 38 1 8.1348 -2.1841 -5.7704 39 1 7.2194 0.4677 -6.6749 40 1 8.3053 -0.5002 -7.4806 41 1 7.8893 -1.0896 -2.8484 42 1 7.3869 -2.7076 -3.3933 43 1 5.5520 -0.5845 -2.1943 44 1 6.1519 -2.0334 -1.3521 45 1 0.6930 -5.3615 -1.3165 46 1 -1.5518 -5.6481 0.5812 47 1 -2.7506 -4.4988 2.3720 48 1 -2.0616 -2.2520 3.0941 49 1 -0.1575 -1.1283 2.0274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580056296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:56 Heat of formation + Delta-G solvation = -16.024413 kcal Electronic energy + Delta-G solvation = -30130.098959 eV Core-core repulsion = 26248.324838 eV Total energy + Delta-G solvation = -3881.774121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.23379 -40.72537 -39.28458 -37.59198 -36.30991 -35.35954 -34.09225 -32.48230 -31.75334 -30.97895 -30.33666 -29.35347 -26.85082 -25.74277 -24.17739 -23.62362 -22.69585 -22.07600 -21.53785 -21.22862 -20.62813 -19.81358 -18.12916 -17.43080 -17.32418 -16.79654 -16.51407 -16.23436 -16.12849 -15.67006 -15.60844 -15.31921 -15.18177 -14.87584 -14.75385 -14.60418 -14.56349 -14.31260 -13.72226 -13.58527 -13.35412 -13.25826 -13.22722 -13.13841 -12.98418 -12.77830 -12.31998 -12.13571 -12.09768 -12.06304 -11.81471 -11.60555 -11.42914 -11.34602 -11.20831 -11.05586 -10.95481 -10.36607 -9.98351 -9.49882 -8.92485 -8.61183 -8.31943 -6.58317 0.12909 1.11782 1.35417 1.36704 1.43146 1.50310 2.06620 2.28825 2.52249 2.80448 2.85962 3.36275 3.59225 3.67770 3.85001 3.93973 4.07100 4.11071 4.24275 4.34449 4.37119 4.43924 4.50583 4.53780 4.55727 4.57594 4.74299 4.75343 4.81369 4.87645 4.89908 5.01346 5.02776 5.05580 5.12695 5.15375 5.20258 5.21744 5.31034 5.37298 5.45035 5.45956 5.53681 5.62961 5.77294 5.91505 5.97795 6.20702 6.24924 6.30426 6.57595 6.60376 6.65701 6.90036 7.29091 7.49563 8.38657 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003374 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.216710 B = 8296.983963 C = 9726.375850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.024 3.976 3 Si 0.988 3.012 4 H -0.240 1.240 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.115 0.885 9 N -0.277 5.277 10 C -0.041 4.041 11 C 0.592 3.408 12 O -0.582 6.582 13 N -0.717 5.717 14 C 0.140 3.860 15 H 0.070 0.930 16 C -0.126 4.126 17 C -0.090 4.090 18 C -0.083 4.083 19 H 0.070 0.930 20 C 0.071 3.929 21 N -0.861 5.861 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.179 4.179 25 C -0.158 4.158 26 C -0.094 4.094 27 C -0.152 4.152 28 C -0.139 4.139 29 C -0.077 4.077 30 C 0.079 3.921 31 H 0.284 0.716 32 H 0.413 0.587 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.344 0.656 40 H 0.349 0.651 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.146 0.854 48 H 0.136 0.864 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 3.444 -3.912 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.163 1.163 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.519 4.519 8 H 0.132 0.868 9 N 0.058 4.942 10 C -0.156 4.156 11 C 0.381 3.619 12 O -0.464 6.464 13 N -0.374 5.374 14 C 0.036 3.964 15 H 0.088 0.912 16 C -0.164 4.164 17 C -0.128 4.128 18 C -0.102 4.102 19 H 0.089 0.911 20 C -0.060 4.060 21 N -0.391 5.391 22 C -0.140 4.140 23 C -0.159 4.159 24 C -0.207 4.207 25 C -0.162 4.162 26 C -0.113 4.113 27 C -0.171 4.171 28 C -0.159 4.159 29 C -0.097 4.097 30 C -0.035 4.035 31 H 0.094 0.906 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.158 0.842 46 H 0.150 0.850 47 H 0.164 0.836 48 H 0.154 0.846 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.688 2.731 -4.471 12.809 hybrid contribution 0.393 1.640 0.341 1.721 sum 12.081 4.371 -4.131 13.495 Atomic orbital electron populations 1.70058 1.07909 1.30289 1.39950 1.26639 0.96319 1.03340 0.92370 0.84954 0.79799 0.75835 0.78605 1.16259 1.19692 1.19449 1.19900 0.92655 0.81811 1.57553 0.86752 1.40113 1.21669 1.11358 1.21086 1.20555 1.02557 0.94024 0.98458 1.17258 0.80787 0.82033 0.81861 1.90672 1.75121 1.38343 1.42269 1.46815 1.25865 1.21346 1.43370 1.21142 0.85494 1.00425 0.89308 0.91175 1.21896 0.98803 1.00422 0.95313 1.21340 0.93495 1.00128 0.97879 1.21182 0.95049 0.99693 0.94281 0.91109 1.21757 0.95236 0.99527 0.89459 1.58662 1.42881 1.23845 1.13750 1.21462 0.96532 1.02192 0.93842 1.21781 0.94469 1.00139 0.99560 1.20634 0.97765 0.99939 1.02340 1.18449 1.00759 0.95646 1.01373 1.20458 0.94324 0.99849 0.96668 1.20737 1.01673 0.95599 0.99076 1.21027 0.97122 0.96250 1.01509 1.20168 0.96132 0.98239 0.95144 1.18815 0.94262 0.94044 0.96357 0.90572 0.74133 0.94502 0.92126 0.90959 0.92592 0.94240 0.91265 0.84297 0.83774 0.89448 0.91284 0.91090 0.91092 0.84247 0.84987 0.83641 0.84575 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.95 10.47 21.67 0.23 -42.72 16 2 C 0.02 1.10 5.16 84.95 0.44 1.54 16 3 Si 0.99 35.02 29.56 68.60 2.03 37.04 16 4 H -0.24 -7.62 7.11 99.48 0.71 -6.91 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.39 -18.95 7.75 84.09 0.65 -18.29 16 8 H 0.12 5.09 6.24 -2.91 -0.02 5.07 16 9 N -0.28 -14.34 2.81 -331.34 -0.93 -15.27 16 10 C -0.04 -2.11 6.77 39.91 0.27 -1.84 16 11 C 0.59 28.15 7.76 86.51 0.67 28.82 16 12 O -0.58 -29.40 16.51 -4.26 -0.07 -29.47 16 13 N -0.72 -28.63 4.98 -446.30 -2.22 -30.86 16 14 C 0.14 4.50 2.47 44.99 0.11 4.61 16 15 H 0.07 2.44 7.55 -2.39 -0.02 2.43 16 16 C -0.13 -3.85 5.53 30.60 0.17 -3.68 16 17 C -0.09 -2.15 5.09 30.60 0.16 -1.99 16 18 C -0.08 -1.52 2.33 -10.79 -0.03 -1.54 16 19 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 20 C 0.07 1.04 6.18 86.31 0.53 1.57 16 21 N -0.86 -12.12 9.08 -186.71 -1.69 -13.82 16 22 C -0.10 -1.84 5.20 30.58 0.16 -1.68 16 23 C -0.12 -2.93 5.41 30.58 0.17 -2.77 16 24 C -0.18 -8.83 10.55 22.63 0.24 -8.59 16 25 C -0.16 -7.64 6.16 -21.33 -0.13 -7.77 16 26 C -0.09 -3.79 10.06 22.31 0.22 -3.56 16 27 C -0.15 -5.50 9.97 22.03 0.22 -5.28 16 28 C -0.14 -5.45 10.02 22.33 0.22 -5.22 16 29 C -0.08 -3.64 8.55 22.38 0.19 -3.45 16 30 C 0.08 4.09 6.03 39.06 0.24 4.32 16 31 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 32 H 0.41 16.53 4.40 -92.71 -0.41 16.12 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.75 7.75 -2.39 -0.02 1.73 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 37 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.34 4.30 8.99 -89.69 -0.81 3.49 16 40 H 0.35 3.68 9.08 -89.69 -0.81 2.86 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.14 6.40 8.06 -2.91 -0.02 6.37 16 46 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 48 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 49 H 0.10 5.07 6.81 -2.91 -0.02 5.05 16 Total: -1.00 -63.79 388.48 0.80 -62.99 By element: Atomic # 1 Polarization: 57.95 SS G_CDS: -1.04 Total: 56.91 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.50 Total: -24.81 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.62 Total: -102.67 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.07 Total: -29.47 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.04 kcal Total: -63.79 0.80 -62.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.968 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds