Wall clock time and date at job start Sat Apr 11 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48504 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47221 * 299.99788 * 3 2 1 6 6 H 1.48503 * 109.47242 * 59.99721 * 3 2 1 7 7 C 1.38814 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99845 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47483 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47484 * 64.99282 * 11 10 9 13 13 N 1.46505 * 109.46792 * 304.99804 * 11 10 9 14 14 C 1.34777 * 120.00115 * 154.99920 * 13 11 10 15 15 O 1.21282 * 119.99620 * 359.97438 * 14 13 11 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 11 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36826 * 125.06538 * 264.69783 * 18 17 16 20 20 C 1.34239 * 109.93157 * 179.81584 * 19 18 17 21 21 C 1.46488 * 106.99464 * 0.43096 * 20 19 18 22 22 C 1.39622 * 134.02886 * 179.75933 * 21 20 19 23 23 C 1.36627 * 119.76598 * 179.97438 * 22 21 20 24 24 C 1.38835 * 120.52431 * 359.97438 * 23 22 21 25 25 C 1.37743 * 120.66743 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.05919 * 85.00008 * 18 17 16 27 27 C 1.52995 * 109.47494 * 185.00341 * 11 10 9 28 28 C 1.53000 * 117.49842 * 248.74579 * 27 11 10 29 29 C 1.53001 * 117.50120 * 180.08742 * 27 11 10 30 30 H 0.96998 * 119.99946 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99780 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47345 * 59.99759 * 10 9 7 33 33 H 1.08997 * 109.47027 * 300.00198 * 10 9 7 34 34 H 0.97003 * 120.00244 * 334.99950 * 13 11 10 35 35 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 36 36 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 37 37 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 38 38 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 39 39 H 1.08004 * 125.02994 * 359.97438 * 19 18 17 40 40 H 1.07998 * 126.50074 * 180.14472 * 20 19 18 41 41 H 1.08004 * 120.12166 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.73859 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.66114 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.10766 * 179.97438 * 25 24 23 45 45 H 1.09003 * 115.54952 * 34.41309 * 27 11 10 46 46 H 1.09009 * 117.49459 * 359.97438 * 28 27 11 47 47 H 1.08995 * 117.50294 * 145.01610 * 28 27 11 48 48 H 1.09000 * 117.49388 * 214.97845 * 29 27 11 49 49 H 1.09000 * 117.49759 * 359.97004 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4980 -4.8135 -0.9316 13 7 0.1441 -4.6763 1.1311 14 6 -1.0803 -5.2372 1.0792 15 8 -1.4208 -5.8602 0.0959 16 6 -2.0268 -5.0892 2.2425 17 6 -3.3370 -5.8146 1.9295 18 7 -4.2569 -5.6713 3.0607 19 6 -4.4122 -6.5840 4.0682 20 6 -5.3288 -6.1457 4.9455 21 6 -5.8064 -4.8508 4.4547 22 6 -6.7426 -3.9233 4.9162 23 6 -6.9662 -2.7759 4.2090 24 6 -6.2694 -2.5242 3.0348 25 6 -5.3407 -3.4249 2.5621 26 6 -5.0982 -4.6006 3.2653 27 6 1.8247 -6.1412 0.1257 28 6 1.8348 -7.0691 -1.0907 29 6 1.0022 -7.4312 0.1417 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6849 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8894 34 1 0.4162 -4.1778 1.9174 35 1 -2.2285 -4.0320 2.4146 36 1 -1.5760 -5.5230 3.1351 37 1 -3.1350 -6.8719 1.7577 38 1 -3.7880 -5.3811 1.0368 39 1 -3.8749 -7.5176 4.1472 40 1 -5.6557 -6.6537 5.8407 41 1 -7.2875 -4.1119 5.8294 42 1 -7.6901 -2.0586 4.5666 43 1 -6.4568 -1.6124 2.4871 44 1 -4.8041 -3.2202 1.6474 45 1 2.7233 -6.1095 0.7420 46 1 1.2990 -6.7382 -1.9805 47 1 2.7397 -7.6482 -1.2746 48 1 1.3598 -8.2483 0.7682 49 1 -0.0810 -7.3384 0.0630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670549847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:33 Heat of formation + Delta-G solvation = 59.954939 kcal Electronic energy + Delta-G solvation = -29050.026893 eV Core-core repulsion = 25171.547484 eV Total energy + Delta-G solvation = -3878.479409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.38298 -39.91052 -37.47749 -36.99429 -35.07488 -33.81797 -33.45775 -31.38390 -30.93813 -29.29290 -28.77140 -27.83737 -24.58415 -23.87872 -22.60475 -22.20550 -21.58739 -21.50939 -20.59500 -20.09937 -20.03886 -17.64163 -17.19950 -16.53329 -16.30559 -16.22587 -15.67608 -15.43804 -15.06457 -14.85822 -14.61389 -14.26282 -13.96053 -13.80510 -13.46383 -13.21678 -13.16864 -12.95028 -12.80413 -12.58911 -12.52928 -12.14711 -11.74742 -11.68126 -11.44579 -11.35575 -11.17971 -11.08676 -10.94825 -10.86931 -10.83646 -10.21159 -10.19233 -9.99149 -9.78210 -9.73212 -9.57453 -8.97570 -8.71921 -8.20461 -7.68991 -7.02282 -5.83860 -3.13831 1.12740 1.62758 2.60909 2.70000 2.76248 3.37699 3.39784 3.44855 3.46923 3.92729 4.07790 4.50583 4.58539 4.63469 4.67872 4.73033 4.83169 4.96826 5.03852 5.10446 5.13478 5.20410 5.25779 5.35910 5.42857 5.43033 5.50106 5.55590 5.66810 5.70450 5.72325 5.79195 5.82543 5.84729 5.89465 6.01784 6.06912 6.16487 6.30272 6.41968 6.44394 6.47906 6.61217 6.62001 6.73470 6.77965 6.85832 7.20491 7.25225 7.63627 7.74743 8.33808 8.40448 9.46042 10.00682 10.36121 11.38514 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007894 B = 0.003253 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.316044 B = 8606.240535 C =11693.126501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.704 5.704 14 C 0.523 3.477 15 O -0.549 6.549 16 C -0.161 4.161 17 C 0.129 3.871 18 N -0.482 5.482 19 C 0.053 3.947 20 C -0.210 4.210 21 C -0.112 4.112 22 C -0.076 4.076 23 C -0.148 4.148 24 C -0.100 4.100 25 C -0.123 4.123 26 C 0.098 3.902 27 C -0.163 4.163 28 C -0.171 4.171 29 C -0.186 4.186 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.405 0.595 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 -14.990 8.697 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.106 0.894 13 N -0.353 5.353 14 C 0.309 3.691 15 O -0.429 6.429 16 C -0.201 4.201 17 C 0.007 3.993 18 N -0.165 5.165 19 C -0.073 4.073 20 C -0.235 4.235 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.167 4.167 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.008 4.008 27 C -0.182 4.182 28 C -0.208 4.208 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.442 -15.357 7.729 19.153 hybrid contribution 0.545 1.250 0.392 1.419 sum -7.897 -14.107 8.120 18.092 Atomic orbital electron populations 1.69668 1.05113 1.25652 1.57425 1.24745 0.95514 0.97719 1.02721 0.86125 0.78792 0.84052 0.77234 1.20540 1.21808 1.21824 1.19250 0.91070 0.84004 1.43128 0.91075 1.42342 1.05949 0.99731 1.89623 1.20917 0.93027 0.85092 0.98996 1.20815 0.90152 0.92777 0.89875 0.89394 1.45959 1.14422 1.54053 1.20849 1.20184 0.82260 0.78571 0.88063 1.90623 1.76285 1.42126 1.33852 1.22029 0.95297 1.04360 0.98455 1.21469 0.87842 1.02625 0.87395 1.44068 1.33981 1.16514 1.21909 1.21817 1.00785 0.95403 0.89249 1.21633 1.03118 0.96499 1.02219 1.19220 0.99967 0.96447 0.96002 1.20225 0.96800 0.93169 0.99313 1.20627 1.01744 0.97891 0.96414 1.20844 0.95894 0.98745 0.96481 1.20155 1.01002 0.92502 1.00704 1.18291 0.94601 0.90670 0.97199 1.22649 1.01473 0.91415 1.02710 1.22896 1.02017 1.03122 0.92784 1.23257 1.00609 0.97463 1.00917 0.93492 0.78069 0.95755 0.94680 0.75985 0.87885 0.88504 0.88461 0.88681 0.81659 0.83829 0.86374 0.86256 0.85724 0.86038 0.87911 0.88733 0.89201 0.89945 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.63 5.43 -59.92 -0.33 -17.95 16 10 C 0.15 2.79 5.80 -4.05 -0.02 2.77 16 11 C 0.17 2.70 2.43 -67.93 -0.17 2.54 16 12 H 0.09 1.62 7.33 -51.93 -0.38 1.24 16 13 N -0.70 -10.43 4.50 -53.81 -0.24 -10.67 16 14 C 0.52 7.50 7.16 -10.99 -0.08 7.42 16 15 O -0.55 -9.11 13.01 5.56 0.07 -9.04 16 16 C -0.16 -1.86 6.02 -27.89 -0.17 -2.02 16 17 C 0.13 1.43 5.29 -4.04 -0.02 1.41 16 18 N -0.48 -5.62 2.78 -114.42 -0.32 -5.94 16 19 C 0.05 0.53 11.27 -16.73 -0.19 0.34 16 20 C -0.21 -2.25 11.08 -37.67 -0.42 -2.66 16 21 C -0.11 -1.42 6.37 -105.14 -0.67 -2.09 16 22 C -0.08 -0.88 10.05 -39.65 -0.40 -1.27 16 23 C -0.15 -1.65 9.97 -39.94 -0.40 -2.04 16 24 C -0.10 -1.21 10.01 -39.54 -0.40 -1.60 16 25 C -0.12 -1.63 10.00 -39.43 -0.39 -2.02 16 26 C 0.10 1.31 6.81 -83.99 -0.57 0.74 16 27 C -0.16 -2.20 5.36 -90.62 -0.49 -2.68 16 28 C -0.17 -2.15 10.18 -26.69 -0.27 -2.42 16 29 C -0.19 -2.38 9.74 -26.69 -0.26 -2.64 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.39 9.89 7.33 -40.82 -0.30 9.59 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 5.81 8.60 -40.82 -0.35 5.46 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.09 1.17 8.10 -51.93 -0.42 0.74 16 39 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 46 H 0.09 1.26 8.05 -51.92 -0.42 0.84 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.12 1.71 5.02 -51.93 -0.26 1.45 16 LS Contribution 406.66 15.07 6.13 6.13 Total: -1.00 -31.78 406.66 -11.73 -43.51 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -7.59 Total: 17.11 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -5.16 Total: -13.39 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.16 Total: -61.29 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.78 -11.73 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670549847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.467 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds