Wall clock time and date at job start Sat Apr 11 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99900 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.50692 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.34243 * 126.50071 * 264.68900 * 17 16 14 19 19 N 1.36833 * 109.93062 * 179.83177 * 18 17 16 20 20 H 0.97001 * 125.06766 * 180.18369 * 19 18 17 21 21 C 1.37688 * 109.87232 * 0.44682 * 19 18 17 22 22 C 1.39123 * 133.50924 * 179.71848 * 21 19 18 23 23 C 1.37749 * 119.78280 * 180.02562 * 22 21 19 24 24 C 1.38841 * 120.66262 * 359.97438 * 23 22 21 25 25 C 1.36617 * 120.52731 * 0.02562 * 24 23 22 26 26 C 1.39631 * 119.76662 * 0.02562 * 25 24 23 27 27 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 28 28 C 1.53010 * 117.49191 * 3.28927 * 27 9 7 29 29 C 1.53003 * 59.99957 * 252.51124 * 28 27 9 30 30 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 31 31 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 32 32 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 33 33 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 34 34 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 35 35 H 1.09008 * 109.46734 * 299.99733 * 12 11 10 36 36 H 1.08996 * 109.47538 * 59.99874 * 12 11 10 37 37 H 0.96997 * 120.00351 * 0.02562 * 13 12 11 38 38 H 1.09002 * 109.46801 * 300.00378 * 16 14 13 39 39 H 1.08996 * 109.47030 * 59.99661 * 16 14 13 40 40 H 1.07995 * 125.03488 * 359.97438 * 18 17 16 41 41 H 1.08007 * 120.11157 * 0.02562 * 22 21 19 42 42 H 1.07993 * 119.66874 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.73126 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.11443 * 179.97438 * 25 24 23 45 45 H 1.08995 * 115.55377 * 148.99346 * 27 9 7 46 46 H 1.08990 * 117.50193 * 0.02562 * 28 27 9 47 47 H 1.09008 * 117.49268 * 145.02347 * 28 27 9 48 48 H 1.09004 * 117.49896 * 252.51715 * 29 28 27 49 49 H 1.08992 * 117.51607 * 107.48005 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 6 0.2766 -2.5803 4.0162 13 7 1.0191 -2.8440 5.2513 14 6 0.3726 -2.8700 6.4337 15 8 -0.8236 -2.6745 6.4751 16 6 1.1362 -3.1419 7.7042 17 6 0.1881 -3.1167 8.8752 18 6 -0.0626 -2.0698 9.6773 19 7 -0.9815 -2.4206 10.6285 20 1 -1.3220 -1.8304 11.3189 21 6 -1.3465 -3.7379 10.4635 22 6 -2.2206 -4.5818 11.1412 23 6 -2.3741 -5.8857 10.7243 24 6 -1.6649 -6.3681 9.6325 25 6 -0.8013 -5.5568 8.9525 26 6 -0.6296 -4.2319 9.3586 27 6 1.6396 -3.6090 -0.3118 28 6 2.6701 -3.5847 -1.4426 29 6 1.1797 -3.7016 -1.7682 30 1 -0.4850 0.8368 0.0731 31 1 -0.0097 -1.3500 1.6009 32 1 -0.3004 -3.0948 1.4021 33 1 1.7131 -3.5853 2.7638 34 1 2.0036 -1.8405 2.9626 35 1 -0.1968 -1.6004 4.0795 36 1 -0.4880 -3.3452 3.8811 37 1 1.9760 -2.9993 5.2183 38 1 1.6092 -4.1218 7.6410 39 1 1.9011 -2.3772 7.8390 40 1 0.3919 -1.0946 9.5841 41 1 -2.7771 -4.2158 11.9914 42 1 -3.0534 -6.5390 11.2515 43 1 -1.7971 -7.3929 9.3184 44 1 -0.2527 -5.9391 8.1044 45 1 1.5779 -4.5130 0.2940 46 1 3.1595 -2.6348 -1.6573 47 1 3.2866 -4.4730 -1.5807 48 1 0.8157 -4.6668 -2.1205 49 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690013928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:52 Heat of formation + Delta-G solvation = 41.487847 kcal Electronic energy + Delta-G solvation = -28228.155072 eV Core-core repulsion = 24348.874870 eV Total energy + Delta-G solvation = -3879.280202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.17184 -40.44809 -38.82117 -37.75821 -36.59166 -35.19065 -34.05486 -33.27453 -31.49537 -30.74882 -30.14262 -28.24854 -26.85036 -25.01115 -23.72621 -23.03252 -22.65578 -22.46256 -21.82433 -21.40100 -20.18611 -18.73759 -18.23949 -17.83510 -17.34684 -17.23121 -16.77782 -16.53889 -16.33697 -16.18203 -15.76696 -15.33974 -15.19589 -14.88206 -14.65374 -14.58784 -14.23835 -13.95822 -13.82378 -13.60510 -13.44269 -13.20606 -12.90752 -12.68722 -12.59814 -12.54198 -12.43905 -12.26494 -12.23854 -12.02635 -11.84752 -11.68428 -11.40177 -11.26661 -10.95711 -10.84829 -10.46385 -10.43533 -9.99600 -9.09921 -8.54070 -8.47524 -7.76537 -5.49330 0.24779 0.74033 1.45988 1.47585 1.54265 1.66767 1.78905 2.29599 2.44862 2.52971 3.03719 3.17920 3.42826 3.54436 3.82641 3.91264 4.02282 4.16560 4.20886 4.25407 4.34404 4.35444 4.42536 4.47129 4.49932 4.58583 4.63082 4.64179 4.71214 4.78494 4.83549 4.94151 4.96647 5.00463 5.05523 5.09696 5.16223 5.25448 5.38859 5.49761 5.55983 5.57719 5.59736 5.69502 5.72789 5.80602 5.84177 5.86303 6.28215 6.48450 6.71445 6.75617 7.17921 7.41508 7.86481 8.39036 9.12329 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002050 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.428856 B =13652.702289 C =14777.692022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.568 5.568 10 C 0.154 3.846 11 C -0.120 4.120 12 C 0.135 3.865 13 N -0.718 5.718 14 C 0.505 3.495 15 O -0.585 6.585 16 C -0.054 4.054 17 C -0.184 4.184 18 C 0.066 3.934 19 N -0.588 5.588 20 H 0.429 0.571 21 C 0.072 3.928 22 C -0.137 4.137 23 C -0.110 4.110 24 C -0.155 4.155 25 C -0.093 4.093 26 C -0.120 4.120 27 C 0.103 3.897 28 C -0.179 4.179 29 C -0.224 4.224 30 H 0.249 0.751 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.198 0.802 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -10.044 23.583 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.233 4.233 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.389 4.389 8 H 0.078 0.922 9 N -0.286 5.286 10 C 0.027 3.973 11 C -0.160 4.160 12 C 0.010 3.990 13 N -0.371 5.371 14 C 0.293 3.707 15 O -0.465 6.465 16 C -0.094 4.094 17 C -0.191 4.191 18 C -0.061 4.061 19 N -0.191 5.191 20 H 0.268 0.732 21 C -0.035 4.035 22 C -0.157 4.157 23 C -0.129 4.129 24 C -0.174 4.174 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.005 4.005 28 C -0.217 4.217 29 C -0.265 4.265 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.252 0.748 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.215 0.785 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.130 0.870 48 H 0.118 0.882 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.639 -9.636 23.638 25.579 hybrid contribution 0.136 1.465 -0.373 1.518 sum 1.774 -8.171 23.266 24.723 Atomic orbital electron populations 1.70186 1.06844 1.26434 1.52440 1.25919 0.95580 1.01609 1.00200 0.85588 0.77947 0.79872 0.78543 1.20259 1.22355 1.19884 1.19146 0.93167 0.86075 1.40490 0.92234 1.43548 1.50930 1.03606 1.30469 1.20659 0.90878 1.00691 0.85033 1.22071 0.98306 1.01813 0.93800 1.21030 0.94772 0.99592 0.83583 1.46013 1.12812 1.72449 1.05849 1.21442 0.87825 0.75518 0.85902 1.90691 1.17455 1.50668 1.87663 1.19964 0.96485 1.06370 0.86596 1.19857 1.05136 0.93563 1.00546 1.22069 0.93651 0.99828 0.90526 1.41700 1.38123 1.09538 1.29769 0.73170 1.18557 1.00356 0.85900 0.98706 1.20362 0.99961 0.93620 1.01802 1.21153 0.99737 0.94929 0.97032 1.20931 0.98387 1.00719 0.97326 1.20471 0.99054 0.92139 0.99520 1.19398 1.00541 0.94849 0.97666 1.21568 1.01705 0.90417 0.86852 1.23017 0.91756 1.02300 1.04606 1.23262 0.97662 1.00783 1.04764 0.94140 0.92311 0.95455 0.91066 0.92539 0.94232 0.92898 0.74816 0.86446 0.85056 0.78522 0.84128 0.83285 0.84390 0.86296 0.86848 0.90780 0.86981 0.88212 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 11.50 21.65 0.25 -53.12 16 2 C -0.04 -1.93 4.98 84.86 0.42 -1.51 16 3 Si 0.95 43.87 29.60 68.60 2.03 45.90 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.26 -13.60 8.47 84.03 0.71 -12.89 16 8 H 0.06 3.12 6.75 -2.91 -0.02 3.11 16 9 N -0.57 -27.19 2.75 -678.02 -1.86 -29.05 16 10 C 0.15 6.94 5.33 86.38 0.46 7.40 16 11 C -0.12 -4.21 5.65 30.60 0.17 -4.04 16 12 C 0.14 4.49 5.67 86.38 0.49 4.98 16 13 N -0.72 -18.51 5.56 -463.05 -2.57 -21.08 16 14 C 0.51 14.02 7.82 87.66 0.69 14.71 16 15 O -0.59 -22.47 16.03 -3.02 -0.05 -22.52 16 16 C -0.05 -1.00 6.23 29.10 0.18 -0.82 16 17 C -0.18 -4.15 4.81 -18.63 -0.09 -4.24 16 18 C 0.07 1.22 11.73 83.00 0.97 2.19 16 19 N -0.59 -10.22 6.07 -187.61 -1.14 -11.36 16 20 H 0.43 4.46 8.96 -92.71 -0.83 3.63 16 21 C 0.07 1.61 7.28 39.03 0.28 1.89 16 22 C -0.14 -2.55 10.08 22.37 0.23 -2.33 16 23 C -0.11 -1.94 10.01 22.30 0.22 -1.72 16 24 C -0.15 -3.10 9.97 22.03 0.22 -2.88 16 25 C -0.09 -2.23 10.05 22.23 0.22 -2.01 16 26 C -0.12 -3.05 6.35 -20.20 -0.13 -3.18 16 27 C 0.10 4.18 6.56 45.00 0.30 4.47 16 28 C -0.18 -6.65 9.80 30.60 0.30 -6.35 16 29 C -0.22 -8.97 10.36 30.60 0.32 -8.65 16 30 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 31 H 0.06 3.12 5.59 -2.39 -0.01 3.11 16 32 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.42 7.83 8.47 -92.71 -0.79 7.04 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 45 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 46 H 0.07 3.10 6.46 -2.39 -0.02 3.09 16 47 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 48 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 49 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -75.75 408.33 1.98 -73.77 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.65 Total: 32.42 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.97 Total: -14.97 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -5.32 Total: -114.61 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.75 1.98 -73.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690013928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.261 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds