Wall clock time and date at job start Sat Apr 11 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47203 * 270.00083 * 3 2 1 5 5 H 1.48499 * 109.47370 * 30.00017 * 3 2 1 6 6 H 1.48500 * 109.47253 * 149.99709 * 3 2 1 7 7 C 1.38950 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00068 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00152 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99969 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46833 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00141 * 49.16014 * 13 12 10 15 15 C 1.54902 * 104.79508 * 146.36045 * 14 13 12 16 16 C 1.55138 * 101.65454 * 322.92969 * 15 14 13 17 17 H 1.08992 * 110.85567 * 277.19651 * 16 15 14 18 18 C 1.53004 * 110.70563 * 154.03727 * 16 15 14 19 19 N 1.46499 * 109.47198 * 71.40040 * 18 16 15 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 F 1.39899 * 110.02190 * 58.60540 * 22 20 19 24 24 C 1.54272 * 110.03311 * 297.15818 * 22 20 19 25 25 C 1.54885 * 104.19948 * 217.10850 * 24 22 20 26 26 C 1.54892 * 102.74948 * 37.94504 * 25 24 22 27 27 C 1.53876 * 110.02991 * 179.97438 * 22 20 19 28 28 C 1.47444 * 110.99453 * 170.00372 * 13 12 10 29 29 H 0.96996 * 120.00264 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00191 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46753 * 60.00461 * 12 10 9 32 32 H 1.08996 * 109.47180 * 300.00541 * 12 10 9 33 33 H 1.09006 * 110.37179 * 265.19493 * 14 13 12 34 34 H 1.08997 * 110.37108 * 27.41993 * 14 13 12 35 35 H 1.09002 * 110.98978 * 204.83341 * 15 14 13 36 36 H 1.09008 * 110.98939 * 81.02349 * 15 14 13 37 37 H 1.09009 * 109.46730 * 311.39828 * 18 16 15 38 38 H 1.08998 * 109.46846 * 191.40372 * 18 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 40 40 H 1.08992 * 110.48564 * 335.79190 * 24 22 20 41 41 H 1.09008 * 110.48182 * 98.42702 * 24 22 20 42 42 H 1.08999 * 110.75755 * 279.62926 * 25 24 22 43 43 H 1.08991 * 110.75482 * 156.25644 * 25 24 22 44 44 H 1.08998 * 110.48663 * 203.38354 * 26 25 24 45 45 H 1.09000 * 110.48603 * 80.73418 * 26 25 24 46 46 H 1.09003 * 110.03170 * 238.56718 * 27 22 20 47 47 H 1.08997 * 110.03241 * 359.97438 * 27 22 20 48 48 H 1.08999 * 109.88706 * 117.33813 * 28 13 12 49 49 H 1.08996 * 109.89123 * 356.14713 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 3.2289 -5.7952 1.0457 15 6 3.5619 -7.2283 1.5302 16 6 2.1683 -7.9081 1.4791 17 1 1.5952 -7.6866 2.3793 18 6 2.3105 -9.4197 1.2890 19 7 2.8249 -10.0207 2.5220 20 6 3.0369 -11.3501 2.5861 21 8 2.7970 -12.0495 1.6247 22 6 3.5720 -11.9675 3.8524 23 9 2.7094 -11.6952 4.9197 24 6 4.9802 -11.4153 4.1556 25 6 5.7486 -12.6301 4.7323 26 6 5.2214 -13.8069 3.8741 27 6 3.7248 -13.4882 3.6737 28 6 1.5115 -7.2619 0.2411 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9209 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 4.1155 -5.3213 0.6244 34 1 2.8340 -5.1973 1.8671 35 1 3.9530 -7.2155 2.5476 36 1 4.2603 -7.7176 0.8512 37 1 3.0027 -9.6194 0.4710 38 1 1.3367 -9.8494 1.0540 39 1 3.0171 -9.4612 3.2907 40 1 5.4564 -11.0619 3.2411 41 1 4.9252 -10.6138 4.8924 42 1 5.5032 -12.7786 5.7839 43 1 6.8232 -12.5061 4.5991 44 1 5.3424 -14.7508 4.4056 45 1 5.7366 -13.8397 2.9141 46 1 3.1278 -14.0136 4.4191 47 1 3.4116 -13.7796 2.6712 48 1 1.6304 -7.9136 -0.6244 49 1 0.4530 -7.0855 0.4326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691149298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:19 Heat of formation + Delta-G solvation = -125.449170 kcal Electronic energy + Delta-G solvation = -29650.715228 eV Core-core repulsion = 25333.426869 eV Total energy + Delta-G solvation = -4317.288359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -48.29958 -40.32575 -39.35986 -37.78412 -37.25081 -35.28153 -33.94782 -32.11859 -31.25569 -29.81616 -29.33741 -28.91771 -27.14184 -25.18229 -23.99367 -22.47534 -21.40196 -21.03394 -20.75745 -19.87607 -19.25387 -18.36342 -17.89524 -16.98535 -16.61297 -15.94220 -15.85256 -15.63826 -15.32773 -15.08082 -14.78148 -14.56413 -14.46843 -14.16721 -13.89215 -13.83701 -13.70173 -13.50448 -13.20518 -12.67001 -12.44954 -12.40193 -12.08837 -12.05183 -11.80961 -11.71909 -11.64648 -11.56601 -11.37670 -11.17789 -11.16813 -11.06217 -10.99616 -10.79439 -10.63653 -10.40220 -10.24864 -10.08133 -9.52398 -9.44732 -8.34880 -8.00736 -7.89349 -6.44611 -3.85587 2.05783 2.61151 3.15674 3.24606 3.29997 3.67083 3.79555 3.86678 4.04452 4.06575 4.16650 4.25714 4.46804 4.51204 4.67615 4.73965 4.80072 4.86375 4.93942 5.06622 5.06696 5.18187 5.22014 5.25320 5.32586 5.39824 5.47458 5.48717 5.52468 5.59892 5.62570 5.71033 5.74220 5.79855 5.80076 5.87023 5.95572 6.01341 6.12058 6.24460 6.33136 6.66362 7.01241 7.27893 7.32245 7.52407 7.68703 8.02845 8.58174 9.14756 9.50694 10.02005 10.73010 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.001746 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.566502 B =16036.438115 C =16421.794303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.039 3.961 13 N -0.509 5.509 14 C 0.061 3.939 15 C -0.131 4.131 16 C -0.125 4.125 17 H 0.082 0.918 18 C 0.130 3.870 19 N -0.715 5.715 20 C 0.503 3.497 21 O -0.522 6.522 22 C 0.101 3.899 23 F -0.192 7.192 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.144 4.144 28 C 0.050 3.950 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -24.894 9.634 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.092 4.092 13 N -0.233 5.233 14 C -0.066 4.066 15 C -0.169 4.169 16 C -0.145 4.145 17 H 0.100 0.900 18 C 0.007 3.993 19 N -0.366 5.366 20 C 0.286 3.714 21 O -0.398 6.398 22 C 0.079 3.921 23 F -0.172 7.172 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.182 4.182 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.239 0.761 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.227 -25.190 8.449 27.289 hybrid contribution -0.866 1.344 1.247 2.028 sum 5.361 -23.845 9.696 26.294 Atomic orbital electron populations 1.69611 1.05947 1.28206 1.50442 1.25272 0.95641 0.99762 0.97270 0.85849 0.79190 0.80769 0.78427 1.20364 1.20937 1.19440 1.19697 0.93360 0.82189 1.47668 0.87891 1.41860 1.09212 1.04598 1.64130 1.19745 0.88399 0.84717 0.84553 1.90487 1.13686 1.86824 1.55669 1.22140 0.94520 0.91116 1.01443 1.63443 1.12150 1.00215 1.47540 1.23057 0.97284 0.93925 0.92364 1.22961 0.95579 0.97116 1.01237 1.22677 0.98439 0.93367 1.00011 0.90011 1.21457 0.99818 0.91862 0.86211 1.45994 1.65951 1.07495 1.17166 1.20683 0.78259 0.82711 0.89757 1.90712 1.50359 1.61073 1.37663 1.21846 0.89874 0.98081 0.82270 1.92923 1.71848 1.95155 1.57279 1.23014 0.92416 0.99605 1.03115 1.22525 1.00115 0.93623 0.99858 1.22376 0.94373 0.98747 1.00541 1.22773 0.98441 0.91186 1.05767 1.22839 0.96931 0.91825 0.96247 0.91840 0.77456 0.89252 0.93442 0.87814 0.93978 0.91305 0.90617 0.90574 0.91086 0.76112 0.89268 0.89214 0.90697 0.90404 0.90666 0.90856 0.89725 0.87845 0.90205 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.20 7.31 -10.98 -0.08 10.12 16 11 O -0.58 -15.15 13.13 5.55 0.07 -15.08 16 12 C 0.04 0.70 5.32 -4.97 -0.03 0.67 16 13 N -0.51 -8.28 5.21 -232.69 -1.21 -9.50 16 14 C 0.06 0.98 4.95 -2.30 -0.01 0.97 16 15 C -0.13 -1.49 6.44 -24.60 -0.16 -1.64 16 16 C -0.13 -1.26 2.96 -88.79 -0.26 -1.53 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C 0.13 1.24 4.97 -4.04 -0.02 1.22 16 19 N -0.72 -6.32 5.42 -60.29 -0.33 -6.65 16 20 C 0.50 5.20 6.73 -10.99 -0.07 5.13 16 21 O -0.52 -7.03 15.21 5.55 0.08 -6.95 16 22 C 0.10 0.84 1.48 -90.65 -0.13 0.71 16 23 F -0.19 -1.82 16.78 2.25 0.04 -1.78 16 24 C -0.14 -0.88 6.10 -25.07 -0.15 -1.04 16 25 C -0.12 -0.64 6.91 -24.74 -0.17 -0.81 16 26 C -0.12 -0.70 6.83 -25.04 -0.17 -0.87 16 27 C -0.14 -1.10 6.25 -25.58 -0.16 -1.26 16 28 C 0.05 0.61 6.47 -2.83 -0.02 0.59 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.10 1.99 6.71 -51.93 -0.35 1.64 16 34 H 0.04 0.73 7.53 -51.93 -0.39 0.34 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.86 7.94 -51.92 -0.41 0.45 16 37 H 0.08 0.79 8.00 -51.92 -0.42 0.37 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 40 H 0.09 0.54 7.85 -51.93 -0.41 0.14 16 41 H 0.09 0.47 8.11 -51.92 -0.42 0.05 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 47 H 0.10 0.95 6.39 -51.93 -0.33 0.62 16 48 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 49 H 0.06 0.64 7.49 -51.93 -0.39 0.25 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -31.98 393.64 -9.36 -41.34 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.91 Total: 10.22 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.68 Total: 4.35 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.87 Total: -53.88 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.16 Total: -22.03 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.98 -9.36 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691149298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.109 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds