Wall clock time and date at job start Sat Apr 11 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47203 * 270.00083 * 3 2 1 5 5 H 1.48499 * 109.47370 * 30.00017 * 3 2 1 6 6 H 1.48500 * 109.47253 * 149.99709 * 3 2 1 7 7 C 1.38950 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00068 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00152 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99969 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46833 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00141 * 49.16014 * 13 12 10 15 15 C 1.54902 * 104.79508 * 146.36045 * 14 13 12 16 16 C 1.55138 * 101.65454 * 322.92969 * 15 14 13 17 17 H 1.08992 * 110.85567 * 277.19651 * 16 15 14 18 18 C 1.53004 * 110.70563 * 154.03727 * 16 15 14 19 19 N 1.46499 * 109.47198 * 71.40040 * 18 16 15 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 F 1.39899 * 110.02190 * 58.60540 * 22 20 19 24 24 C 1.54272 * 110.03311 * 297.15818 * 22 20 19 25 25 C 1.54885 * 104.19948 * 217.10850 * 24 22 20 26 26 C 1.54892 * 102.74948 * 37.94504 * 25 24 22 27 27 C 1.53876 * 110.02991 * 179.97438 * 22 20 19 28 28 C 1.47444 * 110.99453 * 170.00372 * 13 12 10 29 29 H 0.96996 * 120.00264 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00191 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46753 * 60.00461 * 12 10 9 32 32 H 1.08996 * 109.47180 * 300.00541 * 12 10 9 33 33 H 1.09006 * 110.37179 * 265.19493 * 14 13 12 34 34 H 1.08997 * 110.37108 * 27.41993 * 14 13 12 35 35 H 1.09002 * 110.98978 * 204.83341 * 15 14 13 36 36 H 1.09008 * 110.98939 * 81.02349 * 15 14 13 37 37 H 1.09009 * 109.46730 * 311.39828 * 18 16 15 38 38 H 1.08998 * 109.46846 * 191.40372 * 18 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 40 40 H 1.08992 * 110.48564 * 335.79190 * 24 22 20 41 41 H 1.09008 * 110.48182 * 98.42702 * 24 22 20 42 42 H 1.08999 * 110.75755 * 279.62926 * 25 24 22 43 43 H 1.08991 * 110.75482 * 156.25644 * 25 24 22 44 44 H 1.08998 * 110.48663 * 203.38354 * 26 25 24 45 45 H 1.09000 * 110.48603 * 80.73418 * 26 25 24 46 46 H 1.09003 * 110.03170 * 238.56718 * 27 22 20 47 47 H 1.08997 * 110.03241 * 359.97438 * 27 22 20 48 48 H 1.08999 * 109.88706 * 117.33813 * 28 13 12 49 49 H 1.08996 * 109.89123 * 356.14713 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 3.2289 -5.7952 1.0457 15 6 3.5619 -7.2283 1.5302 16 6 2.1683 -7.9081 1.4791 17 1 1.5952 -7.6866 2.3793 18 6 2.3105 -9.4197 1.2890 19 7 2.8249 -10.0207 2.5220 20 6 3.0369 -11.3501 2.5861 21 8 2.7970 -12.0495 1.6247 22 6 3.5720 -11.9675 3.8524 23 9 2.7094 -11.6952 4.9197 24 6 4.9802 -11.4153 4.1556 25 6 5.7486 -12.6301 4.7323 26 6 5.2214 -13.8069 3.8741 27 6 3.7248 -13.4882 3.6737 28 6 1.5115 -7.2619 0.2411 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9209 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 4.1155 -5.3213 0.6244 34 1 2.8340 -5.1973 1.8671 35 1 3.9530 -7.2155 2.5476 36 1 4.2603 -7.7176 0.8512 37 1 3.0027 -9.6194 0.4710 38 1 1.3367 -9.8494 1.0540 39 1 3.0171 -9.4612 3.2907 40 1 5.4564 -11.0619 3.2411 41 1 4.9252 -10.6138 4.8924 42 1 5.5032 -12.7786 5.7839 43 1 6.8232 -12.5061 4.5991 44 1 5.3424 -14.7508 4.4056 45 1 5.7366 -13.8397 2.9141 46 1 3.1278 -14.0136 4.4191 47 1 3.4116 -13.7796 2.6712 48 1 1.6304 -7.9136 -0.6244 49 1 0.4530 -7.0855 0.4326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691149298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:18 Heat of formation + Delta-G solvation = -148.481134 kcal Electronic energy + Delta-G solvation = -29651.713969 eV Core-core repulsion = 25333.426869 eV Total energy + Delta-G solvation = -4318.287100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.98964 -41.19721 -40.68801 -39.24989 -37.88902 -36.34002 -35.81683 -33.44346 -33.04752 -30.75735 -29.84618 -29.71334 -28.54504 -26.57686 -25.40060 -23.20797 -22.28515 -21.83497 -21.62264 -21.03643 -20.63669 -19.87012 -19.09251 -17.98012 -17.52943 -17.24919 -16.78603 -16.57709 -16.42317 -16.27620 -16.01989 -15.86023 -15.59037 -15.34244 -15.05842 -14.78710 -14.58826 -14.42150 -14.21243 -14.13927 -13.56541 -13.50519 -13.36606 -13.09129 -13.06194 -12.89192 -12.55828 -12.42953 -12.31597 -12.20368 -12.17534 -12.13654 -12.07518 -11.89884 -11.83735 -11.67100 -11.51649 -11.47096 -10.87471 -10.26188 -10.15641 -10.01089 -9.20976 -8.47506 -5.96168 1.26784 1.37207 1.41217 1.53702 1.87222 2.03426 2.28153 2.87624 3.08037 3.19684 3.24913 3.31233 3.42669 3.56114 3.61296 3.68109 3.88284 4.20415 4.25268 4.28328 4.31707 4.32792 4.36588 4.41507 4.42205 4.48562 4.58127 4.63773 4.64246 4.74047 4.80751 4.86012 4.95166 4.97224 5.05934 5.08155 5.13940 5.16566 5.24378 5.31264 5.36518 5.36695 5.40665 5.89404 6.03445 6.16919 6.28946 6.59533 6.94035 7.11825 7.54571 8.10062 8.69861 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.001746 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.566502 B =16036.438115 C =16421.794303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.051 3.949 13 N -0.528 5.528 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.108 4.108 17 H 0.095 0.905 18 C 0.137 3.863 19 N -0.706 5.706 20 C 0.499 3.501 21 O -0.559 6.559 22 C 0.100 3.900 23 F -0.198 7.198 24 C -0.141 4.141 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.147 4.147 28 C 0.048 3.952 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -25.734 10.789 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.501 6.501 12 C -0.080 4.080 13 N -0.253 5.253 14 C -0.066 4.066 15 C -0.155 4.155 16 C -0.128 4.128 17 H 0.113 0.887 18 C 0.014 3.986 19 N -0.357 5.357 20 C 0.284 3.716 21 O -0.437 6.437 22 C 0.079 3.921 23 F -0.178 7.178 24 C -0.179 4.179 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.185 4.185 28 C -0.080 4.080 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.207 -26.033 9.621 28.440 hybrid contribution -0.866 1.556 0.858 1.977 sum 5.341 -24.477 10.479 27.156 Atomic orbital electron populations 1.69672 1.06831 1.29290 1.50320 1.26044 0.96549 1.02430 0.96307 0.84923 0.77888 0.76888 0.78613 1.19738 1.19556 1.19721 1.19655 0.92690 0.83949 1.49877 0.90253 1.41934 1.09303 1.04717 1.65054 1.20769 0.88363 0.86055 0.82340 1.90481 1.15513 1.87664 1.56449 1.22033 0.94264 0.88474 1.03236 1.63387 1.12515 1.01252 1.48171 1.22856 0.95799 0.96417 0.91530 1.22865 0.96529 0.93814 1.02324 1.22528 0.97327 0.93289 0.99639 0.88697 1.21316 0.99742 0.91262 0.86326 1.45927 1.65174 1.07275 1.17294 1.21067 0.77675 0.82844 0.90043 1.90699 1.51972 1.61928 1.39101 1.21944 0.90690 0.98426 0.81086 1.92909 1.72286 1.95221 1.57433 1.23055 0.90876 1.00389 1.03587 1.22548 1.00739 0.92613 0.99893 1.22386 0.92786 0.99763 1.00856 1.22789 1.00032 0.90929 1.04718 1.22927 0.97583 0.89884 0.97609 0.91313 0.77055 0.87499 0.91277 0.91795 0.95803 0.89068 0.90485 0.91230 0.91038 0.74870 0.89180 0.88010 0.90150 0.89055 0.89338 0.91055 0.89393 0.89739 0.89345 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.30 5.29 -306.99 -1.62 -30.92 16 10 C 0.44 20.65 7.31 87.66 0.64 21.29 16 11 O -0.61 -33.22 13.13 -3.06 -0.04 -33.26 16 12 C 0.05 1.76 5.32 85.56 0.45 2.22 16 13 N -0.53 -16.75 5.21 -890.09 -4.64 -21.38 16 14 C 0.06 1.99 4.95 86.77 0.43 2.42 16 15 C -0.12 -2.47 6.44 31.98 0.21 -2.26 16 16 C -0.11 -1.92 2.96 -9.61 -0.03 -1.95 16 17 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 18 C 0.14 2.34 4.97 86.38 0.43 2.77 16 19 N -0.71 -11.10 5.42 -463.05 -2.51 -13.61 16 20 C 0.50 9.79 6.73 87.66 0.59 10.38 16 21 O -0.56 -14.88 15.21 -3.04 -0.05 -14.93 16 22 C 0.10 1.53 1.48 -10.81 -0.02 1.52 16 23 F -0.20 -3.45 16.78 44.97 0.75 -2.69 16 24 C -0.14 -1.44 6.10 31.67 0.19 -1.25 16 25 C -0.12 -0.97 6.91 31.88 0.22 -0.75 16 26 C -0.12 -1.18 6.83 31.69 0.22 -0.97 16 27 C -0.15 -2.14 6.25 31.34 0.20 -1.94 16 28 C 0.05 1.05 6.47 86.65 0.56 1.61 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.07 2.10 7.96 -2.39 -0.02 2.08 16 33 H 0.06 2.57 6.71 -2.38 -0.02 2.55 16 34 H 0.02 0.84 7.53 -2.39 -0.02 0.82 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.64 7.94 -2.38 -0.02 1.62 16 37 H 0.07 1.33 8.00 -2.38 -0.02 1.31 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.41 4.82 8.47 -92.71 -0.79 4.04 16 40 H 0.09 0.92 7.85 -2.39 -0.02 0.90 16 41 H 0.10 0.80 8.11 -2.38 -0.02 0.78 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 1.18 8.02 -2.39 -0.02 1.16 16 47 H 0.08 1.57 6.39 -2.39 -0.02 1.56 16 48 H 0.09 1.83 7.82 -2.39 -0.02 1.81 16 49 H 0.07 1.41 7.49 -2.39 -0.02 1.39 16 Total: -1.00 -71.01 393.64 -0.96 -71.97 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.54 Total: 34.38 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.37 Total: 14.88 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -8.49 Total: -115.13 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.09 Total: -48.19 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.69 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.01 -0.96 -71.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691149298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.514 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds