Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48502 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47228 * 300.00063 * 3 2 1 6 6 H 1.48508 * 109.47203 * 59.99895 * 3 2 1 7 7 C 1.38950 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99648 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00640 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99564 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00324 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47314 * 184.47242 * 12 10 9 14 14 C 1.46906 * 110.99600 * 283.94388 * 13 12 10 15 15 C 1.53003 * 109.47002 * 170.00316 * 14 13 12 16 16 N 1.46496 * 109.47068 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00113 * 179.97438 * 16 15 14 18 18 O 1.21279 * 119.99733 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00138 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.43476 * 300.69876 * 19 17 16 21 21 C 1.54886 * 110.59875 * 63.31702 * 19 17 16 22 22 C 1.54896 * 102.74847 * 156.67734 * 21 19 17 23 23 C 1.54256 * 104.19422 * 322.06038 * 22 21 19 24 24 H 1.08998 * 110.03571 * 142.89279 * 23 22 21 25 25 F 1.39906 * 110.07194 * 264.30357 * 23 22 21 26 26 C 1.53872 * 106.60303 * 23.60945 * 23 22 21 27 27 C 1.46901 * 111.00544 * 159.98651 * 13 12 10 28 28 C 1.52997 * 117.49576 * 11.81723 * 27 13 12 29 29 C 1.52998 * 117.49361 * 303.15662 * 27 13 12 30 30 H 0.96998 * 119.99949 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99566 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47326 * 64.46940 * 12 10 9 33 33 H 1.09004 * 109.47292 * 304.46717 * 12 10 9 34 34 H 1.09000 * 109.47487 * 49.99445 * 14 13 12 35 35 H 1.09008 * 109.46662 * 289.99034 * 14 13 12 36 36 H 1.09000 * 109.47711 * 59.99266 * 15 14 13 37 37 H 1.09008 * 109.46364 * 299.98899 * 15 14 13 38 38 H 0.97000 * 119.99907 * 359.97438 * 16 15 14 39 39 H 1.09008 * 110.75986 * 274.98970 * 21 19 17 40 40 H 1.08993 * 110.76051 * 38.36192 * 21 19 17 41 41 H 1.08995 * 110.48491 * 203.37706 * 22 21 19 42 42 H 1.09004 * 110.59760 * 80.79087 * 22 21 19 43 43 H 1.09006 * 110.03603 * 240.71848 * 26 23 22 44 44 H 1.08991 * 110.03799 * 119.28640 * 26 23 22 45 45 H 1.09000 * 115.55124 * 157.48536 * 27 13 12 46 46 H 1.09004 * 117.50027 * 359.97438 * 28 27 13 47 47 H 1.08998 * 117.49975 * 145.02605 * 28 27 13 48 48 H 1.09003 * 117.49264 * 214.97616 * 29 27 13 49 49 H 1.08992 * 117.50560 * 0.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8628 0.0000 13 7 2.1947 -5.9774 0.1081 14 6 2.8768 -6.2134 -1.1715 15 6 4.0258 -7.2018 -0.9622 16 7 4.7055 -7.4377 -2.2383 17 6 5.7568 -8.2791 -2.2965 18 8 6.1403 -8.8406 -1.2922 19 6 6.4557 -8.5221 -3.6093 20 1 5.7577 -8.9250 -4.3432 21 6 7.0995 -7.2148 -4.1341 22 6 8.2170 -7.7364 -5.0714 23 6 8.7687 -8.9810 -4.3460 24 1 9.0241 -9.7534 -5.0714 25 9 9.8978 -8.6375 -3.5946 26 6 7.6490 -9.4806 -3.4164 27 6 1.5254 -7.1966 0.5807 28 6 -0.0044 -7.1987 0.6044 29 6 0.7817 -7.1219 1.9157 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6790 -4.9559 -0.9275 33 1 0.5581 -4.8869 0.8470 34 1 3.2723 -5.2715 -1.5516 35 1 2.1686 -6.6265 -1.8898 36 1 3.6303 -8.1437 -0.5821 37 1 4.7340 -6.7887 -0.2438 38 1 4.3990 -6.9882 -3.0414 39 1 6.3731 -6.6230 -4.6912 40 1 7.5228 -6.6360 -3.3133 41 1 8.9981 -6.9854 -5.1884 42 1 7.8054 -8.0120 -6.0424 43 1 7.9849 -9.4547 -2.3797 44 1 7.3609 -10.4953 -3.6907 45 1 2.0262 -8.1331 0.3352 46 1 -0.5142 -6.2952 0.2698 47 1 -0.5101 -8.1366 0.3751 48 1 0.7930 -8.0095 2.5483 49 1 0.7887 -6.1681 2.4431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691222745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -120.981958 kcal Electronic energy + Delta-G solvation = -29679.713426 eV Core-core repulsion = 25362.618780 eV Total energy + Delta-G solvation = -4317.094646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.59203 -41.17667 -40.65314 -39.12758 -37.78308 -36.42460 -35.94177 -34.36566 -33.26937 -31.16177 -29.94996 -29.33809 -27.74881 -26.08061 -24.18520 -23.24485 -22.98401 -21.74661 -21.58367 -20.92552 -20.39613 -19.72220 -18.61319 -18.21998 -17.60483 -17.32841 -16.85361 -16.78954 -16.47613 -16.41772 -15.93029 -15.85263 -15.66888 -15.51004 -15.37042 -14.65270 -14.60581 -14.31402 -14.27119 -14.01746 -13.63912 -13.48726 -13.29894 -12.99762 -12.93308 -12.58550 -12.53069 -12.41167 -12.35568 -12.24580 -12.17845 -12.11777 -11.97199 -11.72915 -11.58383 -11.55303 -11.48266 -11.22928 -10.89367 -10.27926 -10.13917 -9.99407 -9.06029 -8.46169 -5.94322 1.35999 1.41662 1.55294 1.57283 1.96559 2.07203 2.28898 2.69987 2.98368 3.20524 3.29136 3.35645 3.46791 3.68520 3.71424 3.90941 3.93923 4.00870 4.08591 4.09677 4.16976 4.22086 4.28522 4.35165 4.39870 4.40567 4.43598 4.47664 4.51943 4.64028 4.80587 4.84830 4.87932 4.94328 4.97881 5.01240 5.09636 5.13437 5.22403 5.27080 5.34076 5.39252 5.41833 5.84153 6.05794 6.16501 6.50191 6.61402 7.14247 7.20136 7.57468 8.13575 8.71379 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.002460 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.594973 B =11377.281473 C =13741.449269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.505 5.505 14 C 0.061 3.939 15 C 0.138 3.862 16 N -0.714 5.714 17 C 0.514 3.486 18 O -0.588 6.588 19 C -0.103 4.103 20 H 0.146 0.854 21 C -0.118 4.118 22 C -0.141 4.141 23 C 0.076 3.924 24 H 0.119 0.881 25 F -0.236 7.236 26 C -0.142 4.142 27 C 0.008 3.992 28 C -0.205 4.205 29 C -0.178 4.178 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 -19.781 -12.714 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.072 4.072 13 N -0.227 5.227 14 C -0.067 4.067 15 C 0.013 3.987 16 N -0.366 5.366 17 C 0.302 3.698 18 O -0.468 6.468 19 C -0.124 4.124 20 H 0.163 0.837 21 C -0.156 4.156 22 C -0.179 4.179 23 C 0.040 3.960 24 H 0.137 0.863 25 F -0.218 7.218 26 C -0.180 4.180 27 C -0.101 4.101 28 C -0.244 4.244 29 C -0.216 4.216 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.252 0.748 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.151 0.849 46 H 0.115 0.885 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.159 -19.862 -11.634 23.589 hybrid contribution -0.709 1.225 -0.116 1.420 sum 4.450 -18.637 -11.750 22.477 Atomic orbital electron populations 1.69672 1.06733 1.29148 1.50589 1.25989 0.96521 1.02259 0.96457 0.84913 0.78015 0.77353 0.78319 1.19956 1.19445 1.19818 1.19643 0.92572 0.83972 1.49620 0.90494 1.41921 1.09264 1.04650 1.65403 1.20796 0.88316 0.85882 0.82178 1.90499 1.15676 1.87818 1.55967 1.21791 0.93738 0.88318 1.03363 1.61094 1.28669 1.03719 1.29236 1.22089 0.95255 0.99165 0.90158 1.21032 0.93708 0.98314 0.85651 1.45813 1.32421 1.46395 1.11995 1.21156 0.79394 0.77726 0.91559 1.90686 1.65895 1.51317 1.38882 1.22214 0.97944 0.98361 0.93859 0.83672 1.22565 0.98686 0.95309 0.99046 1.23005 0.98544 0.96392 0.99947 1.22568 0.81846 0.99280 0.92300 0.86336 1.92795 1.55308 1.94109 1.79556 1.22739 0.94115 1.00454 1.00670 1.22867 0.92096 0.93182 1.01937 1.23666 0.94557 1.04534 1.01621 1.23150 1.03727 1.03551 0.91169 0.91352 0.77071 0.90385 0.87600 0.91504 0.91786 0.91031 0.94137 0.74804 0.87649 0.93491 0.90309 0.86128 0.92062 0.87847 0.84868 0.88506 0.86593 0.86647 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.05 5.29 -307.00 -1.62 -30.67 16 10 C 0.44 20.63 7.52 87.65 0.66 21.29 16 11 O -0.61 -33.57 14.62 -3.08 -0.04 -33.61 16 12 C 0.06 1.97 4.12 85.55 0.35 2.32 16 13 N -0.50 -15.78 4.31 -875.51 -3.78 -19.56 16 14 C 0.06 1.71 4.68 86.30 0.40 2.12 16 15 C 0.14 3.77 5.67 86.38 0.49 4.26 16 16 N -0.71 -15.56 5.52 -463.05 -2.56 -18.12 16 17 C 0.51 12.40 7.14 87.66 0.63 13.02 16 18 O -0.59 -19.97 15.44 -3.03 -0.05 -20.02 16 19 C -0.10 -1.51 3.25 -10.47 -0.03 -1.55 16 20 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 21 C -0.12 -1.64 6.30 31.89 0.20 -1.43 16 22 C -0.14 -1.49 6.62 31.67 0.21 -1.28 16 23 C 0.08 1.06 4.68 31.31 0.15 1.21 16 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 25 F -0.24 -5.42 17.05 44.97 0.77 -4.65 16 26 C -0.14 -2.35 6.02 31.32 0.19 -2.16 16 27 C 0.01 0.19 5.83 44.91 0.26 0.45 16 28 C -0.20 -4.00 9.57 30.62 0.29 -3.70 16 29 C -0.18 -4.00 9.90 30.62 0.30 -3.70 16 30 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.40 18.95 7.90 -92.70 -0.73 18.22 16 32 H 0.08 2.25 7.82 -2.39 -0.02 2.23 16 33 H 0.11 3.28 5.52 -2.38 -0.01 3.26 16 34 H 0.07 2.31 6.60 -2.39 -0.02 2.30 16 35 H 0.06 1.40 8.12 -2.38 -0.02 1.38 16 36 H 0.07 1.85 6.40 -2.39 -0.02 1.84 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.42 6.43 8.47 -92.71 -0.79 5.64 16 39 H 0.11 0.96 8.14 -2.38 -0.02 0.95 16 40 H 0.05 0.96 8.05 -2.39 -0.02 0.94 16 41 H 0.08 0.96 8.11 -2.39 -0.02 0.94 16 42 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 1.54 6.75 -2.38 -0.02 1.53 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.13 2.81 6.34 -2.39 -0.02 2.79 16 46 H 0.10 1.99 6.06 -2.38 -0.01 1.97 16 47 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.08 2.13 7.40 -2.39 -0.02 2.11 16 Total: -1.00 -77.36 396.79 -0.12 -77.47 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.53 Total: 40.21 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.38 Total: 12.96 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -7.67 Total: -117.21 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.09 Total: -53.63 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.77 Total: -4.65 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -77.36 -0.12 -77.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.508 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds