Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48500 * 109.47409 * 270.00238 * 3 2 1 5 5 H 1.48498 * 109.47250 * 30.00262 * 3 2 1 6 6 H 1.48506 * 109.47298 * 149.99985 * 3 2 1 7 7 C 1.38948 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99995 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00147 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99983 * 0.26304 * 10 9 7 12 12 C 1.50700 * 120.00017 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47252 * 175.45478 * 12 10 9 14 14 C 1.46898 * 111.00029 * 76.27845 * 13 12 10 15 15 C 1.53001 * 109.47334 * 190.00229 * 14 13 12 16 16 N 1.46502 * 109.47257 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99878 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00248 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99923 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.01402 * 59.30023 * 19 17 16 21 21 C 1.53880 * 110.03198 * 180.68835 * 19 17 16 22 22 C 1.54267 * 106.59627 * 119.28479 * 21 19 17 23 23 C 1.54898 * 104.19656 * 23.61000 * 22 21 19 24 24 H 1.08997 * 110.75448 * 203.74195 * 23 22 21 25 25 F 1.39898 * 110.75323 * 80.55826 * 23 22 21 26 26 C 1.54264 * 110.03342 * 297.90797 * 19 17 16 27 27 C 1.46899 * 111.00358 * 200.23504 * 13 12 10 28 28 C 1.52999 * 117.50275 * 133.74552 * 27 13 12 29 29 C 1.53002 * 60.00141 * 252.51122 * 28 27 13 30 30 H 0.97008 * 119.99757 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99357 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46995 * 295.45352 * 12 10 9 33 33 H 1.09003 * 109.46949 * 55.45367 * 12 10 9 34 34 H 1.09002 * 109.47055 * 309.99714 * 14 13 12 35 35 H 1.09001 * 109.47310 * 69.99917 * 14 13 12 36 36 H 1.09008 * 109.47063 * 299.99819 * 15 14 13 37 37 H 1.08996 * 109.47388 * 60.00045 * 15 14 13 38 38 H 0.96995 * 119.99802 * 0.02562 * 16 15 14 39 39 H 1.09003 * 110.02942 * 238.56650 * 21 19 17 40 40 H 1.08994 * 110.03053 * 359.95366 * 21 19 17 41 41 H 1.08999 * 110.48659 * 142.28768 * 22 21 19 42 42 H 1.08999 * 110.48684 * 264.93403 * 22 21 19 43 43 H 1.09006 * 110.48185 * 335.78285 * 26 19 17 44 44 H 1.08994 * 110.48787 * 98.42529 * 26 19 17 45 45 H 1.08998 * 115.54898 * 279.45819 * 27 13 12 46 46 H 1.08993 * 117.49912 * 0.02562 * 28 27 13 47 47 H 1.09006 * 117.49597 * 145.01857 * 28 27 13 48 48 H 1.08994 * 117.49729 * 252.50850 * 29 28 27 49 49 H 1.08994 * 117.51314 * 107.47950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0073 12 6 1.2436 -4.8630 0.0022 13 7 2.1944 -5.9774 -0.1065 14 6 2.8731 -6.2171 1.1741 15 6 4.0224 -7.2052 0.9651 16 7 4.6988 -7.4447 2.2424 17 6 5.7491 -8.2873 2.3011 18 8 6.1340 -8.8476 1.2966 19 6 6.4445 -8.5342 3.6150 20 1 5.7385 -8.9378 4.3408 21 6 7.6142 -9.5142 3.4164 22 6 8.8950 -8.7616 3.8322 23 6 8.3914 -7.6577 4.7951 24 1 9.0945 -6.8256 4.8302 25 9 8.1767 -8.1774 6.0761 26 6 7.0543 -7.2201 4.1453 27 6 1.5260 -7.1952 -0.5841 28 6 2.2137 -7.9884 -1.6970 29 6 0.9534 -7.1766 -2.0028 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6791 -4.9561 0.9299 33 1 0.5576 -4.8868 -0.8446 34 1 3.2680 -5.2764 1.5577 35 1 2.1630 -6.6318 1.8896 36 1 3.6276 -8.1460 0.5815 37 1 4.7325 -6.7905 0.2497 38 1 4.3903 -6.9975 3.0459 39 1 7.4762 -10.3929 4.0465 40 1 7.6783 -9.8118 2.3698 41 1 9.5817 -9.4331 4.3476 42 1 9.3763 -8.3173 2.9610 43 1 7.2381 -6.5265 3.3247 44 1 6.3981 -6.7677 4.8887 45 1 0.9792 -7.7586 0.1720 46 1 3.1623 -7.6070 -2.0746 47 1 2.1196 -9.0742 -1.6732 48 1 0.0302 -7.7282 -2.1802 49 1 1.0725 -6.2608 -2.5816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691222746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = -101.224081 kcal Electronic energy + Delta-G solvation = -29763.395373 eV Core-core repulsion = 25447.157493 eV Total energy + Delta-G solvation = -4316.237880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.87827 -40.19326 -38.98953 -37.50386 -36.86926 -35.24443 -34.08903 -33.38294 -31.26792 -30.29691 -28.86254 -28.64372 -26.28112 -24.19328 -23.06972 -22.26119 -21.83526 -21.10563 -20.43210 -19.72569 -19.08868 -17.86903 -17.82794 -16.58201 -16.39766 -16.20777 -15.84630 -15.77335 -15.52524 -15.12477 -14.84301 -14.49995 -14.44753 -14.32515 -13.93134 -13.79960 -13.40320 -13.24872 -13.01497 -12.73122 -12.42245 -12.40146 -11.81664 -11.68715 -11.60021 -11.52996 -11.39505 -11.24986 -11.24027 -11.20854 -11.15254 -10.94739 -10.80314 -10.41250 -10.36116 -10.23917 -10.12262 -9.84277 -9.50563 -9.06836 -8.53062 -7.99772 -7.93908 -6.43138 -3.83916 2.53814 2.99385 3.16439 3.25189 3.30486 3.77743 3.86826 3.88771 3.95839 4.01885 4.20551 4.35386 4.44918 4.80763 4.86435 4.95924 4.96741 5.00420 5.02218 5.08625 5.10832 5.13547 5.17490 5.22506 5.25307 5.42199 5.43656 5.60748 5.63095 5.66407 5.72772 5.76946 5.80614 5.87142 5.92830 5.98647 6.05967 6.15348 6.18947 6.26312 6.30040 6.39965 7.13753 7.32730 7.42155 7.53641 8.04811 8.13837 8.60462 9.16936 9.53334 10.05144 10.74630 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.002532 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.266461 B =11056.200719 C =13464.421448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.049 3.951 13 N -0.483 5.483 14 C 0.054 3.946 15 C 0.127 3.873 16 N -0.725 5.725 17 C 0.519 3.481 18 O -0.538 6.538 19 C -0.113 4.113 20 H 0.101 0.899 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.083 3.917 24 H 0.094 0.906 25 F -0.209 7.209 26 C -0.141 4.141 27 C 0.000 4.000 28 C -0.162 4.162 29 C -0.171 4.171 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -17.764 7.438 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.082 4.082 13 N -0.207 5.207 14 C -0.074 4.074 15 C 0.004 3.996 16 N -0.377 5.377 17 C 0.305 3.695 18 O -0.415 6.415 19 C -0.135 4.135 20 H 0.119 0.881 21 C -0.156 4.156 22 C -0.185 4.185 23 C 0.047 3.953 24 H 0.112 0.888 25 F -0.189 7.189 26 C -0.179 4.179 27 C -0.109 4.109 28 C -0.199 4.199 29 C -0.209 4.209 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.120 0.880 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.383 -17.870 6.382 20.745 hybrid contribution -1.223 0.944 1.056 1.871 sum 7.161 -16.926 7.438 19.827 Atomic orbital electron populations 1.69611 1.05927 1.28125 1.50714 1.25248 0.95622 0.99686 0.97395 0.85874 0.79212 0.80881 0.78416 1.20409 1.20959 1.19446 1.19681 0.93314 0.82199 1.47535 0.87965 1.41865 1.09170 1.04575 1.64632 1.19768 0.88439 0.84495 0.84417 1.90513 1.13624 1.86969 1.54958 1.21844 0.93888 0.90801 1.01662 1.61136 1.28500 1.02771 1.28326 1.22228 0.94879 1.00374 0.89949 1.21282 0.94619 0.98794 0.84948 1.45943 1.32801 1.46667 1.12240 1.20431 0.79786 0.78585 0.90746 1.90676 1.64645 1.49424 1.36772 1.21937 0.98795 0.97466 0.95266 0.88060 1.22162 0.91783 0.97276 1.04404 1.22976 0.98446 0.97704 0.99394 1.22473 0.97628 0.96649 0.78598 0.88833 1.92807 1.96175 1.88773 1.41193 1.22999 0.96596 0.96788 1.01543 1.22467 1.02014 0.94673 0.91732 1.23057 0.97601 0.97361 1.01925 1.23036 0.97384 1.02928 0.97513 0.91895 0.77537 0.93111 0.89130 0.88488 0.95158 0.91518 0.90327 0.76672 0.91071 0.88571 0.90180 0.89507 0.88905 0.89376 0.89842 0.87988 0.89076 0.88852 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.10 7.53 -10.99 -0.08 10.02 16 11 O -0.58 -15.03 14.63 5.55 0.08 -14.95 16 12 C 0.05 0.84 5.44 -4.98 -0.03 0.81 16 13 N -0.48 -7.62 4.22 -228.09 -0.96 -8.58 16 14 C 0.05 0.78 4.68 -3.82 -0.02 0.76 16 15 C 0.13 1.73 5.58 -4.04 -0.02 1.71 16 16 N -0.73 -8.20 5.49 -60.29 -0.33 -8.54 16 17 C 0.52 6.25 7.00 -10.99 -0.08 6.18 16 18 O -0.54 -8.49 15.21 5.55 0.08 -8.40 16 19 C -0.11 -1.01 3.29 -90.65 -0.30 -1.31 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 21 C -0.12 -1.05 6.40 -25.61 -0.16 -1.22 16 22 C -0.15 -1.11 6.63 -25.07 -0.17 -1.28 16 23 C 0.08 0.64 4.70 -24.69 -0.12 0.52 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 F -0.21 -2.04 17.22 2.25 0.04 -2.00 16 26 C -0.14 -1.11 6.10 -25.03 -0.15 -1.27 16 27 C 0.00 0.00 4.20 -67.71 -0.28 -0.28 16 28 C -0.16 -1.92 9.70 -26.73 -0.26 -2.18 16 29 C -0.17 -2.01 9.61 -26.73 -0.26 -2.27 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 32 H 0.05 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.09 1.43 7.05 -51.93 -0.37 1.07 16 34 H 0.10 1.65 6.61 -51.93 -0.34 1.31 16 35 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.07 0.91 6.84 -51.92 -0.35 0.56 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.40 3.57 8.46 -40.82 -0.35 3.23 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.04 6.39 -51.93 -0.33 0.71 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 46 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.10 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -32.49 402.14 -9.43 -41.92 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -7.88 Total: 13.85 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.17 Total: 2.39 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.63 Total: -54.65 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.49 -9.43 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.302 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds