Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48500 * 109.47409 * 270.00238 * 3 2 1 5 5 H 1.48498 * 109.47250 * 30.00262 * 3 2 1 6 6 H 1.48506 * 109.47298 * 149.99985 * 3 2 1 7 7 C 1.38948 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99995 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00147 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99983 * 0.26304 * 10 9 7 12 12 C 1.50700 * 120.00017 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47252 * 175.45478 * 12 10 9 14 14 C 1.46898 * 111.00029 * 76.27845 * 13 12 10 15 15 C 1.53001 * 109.47334 * 190.00229 * 14 13 12 16 16 N 1.46502 * 109.47257 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99878 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00248 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99923 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.01402 * 59.30023 * 19 17 16 21 21 C 1.53880 * 110.03198 * 180.68835 * 19 17 16 22 22 C 1.54267 * 106.59627 * 119.28479 * 21 19 17 23 23 C 1.54898 * 104.19656 * 23.61000 * 22 21 19 24 24 H 1.08997 * 110.75448 * 203.74195 * 23 22 21 25 25 F 1.39898 * 110.75323 * 80.55826 * 23 22 21 26 26 C 1.54264 * 110.03342 * 297.90797 * 19 17 16 27 27 C 1.46899 * 111.00358 * 200.23504 * 13 12 10 28 28 C 1.52999 * 117.50275 * 133.74552 * 27 13 12 29 29 C 1.53002 * 60.00141 * 252.51122 * 28 27 13 30 30 H 0.97008 * 119.99757 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99357 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46995 * 295.45352 * 12 10 9 33 33 H 1.09003 * 109.46949 * 55.45367 * 12 10 9 34 34 H 1.09002 * 109.47055 * 309.99714 * 14 13 12 35 35 H 1.09001 * 109.47310 * 69.99917 * 14 13 12 36 36 H 1.09008 * 109.47063 * 299.99819 * 15 14 13 37 37 H 1.08996 * 109.47388 * 60.00045 * 15 14 13 38 38 H 0.96995 * 119.99802 * 0.02562 * 16 15 14 39 39 H 1.09003 * 110.02942 * 238.56650 * 21 19 17 40 40 H 1.08994 * 110.03053 * 359.95366 * 21 19 17 41 41 H 1.08999 * 110.48659 * 142.28768 * 22 21 19 42 42 H 1.08999 * 110.48684 * 264.93403 * 22 21 19 43 43 H 1.09006 * 110.48185 * 335.78285 * 26 19 17 44 44 H 1.08994 * 110.48787 * 98.42529 * 26 19 17 45 45 H 1.08998 * 115.54898 * 279.45819 * 27 13 12 46 46 H 1.08993 * 117.49912 * 0.02562 * 28 27 13 47 47 H 1.09006 * 117.49597 * 145.01857 * 28 27 13 48 48 H 1.08994 * 117.49729 * 252.50850 * 29 28 27 49 49 H 1.08994 * 117.51314 * 107.47950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0073 12 6 1.2436 -4.8630 0.0022 13 7 2.1944 -5.9774 -0.1065 14 6 2.8731 -6.2171 1.1741 15 6 4.0224 -7.2052 0.9651 16 7 4.6988 -7.4447 2.2424 17 6 5.7491 -8.2873 2.3011 18 8 6.1340 -8.8476 1.2966 19 6 6.4445 -8.5342 3.6150 20 1 5.7385 -8.9378 4.3408 21 6 7.6142 -9.5142 3.4164 22 6 8.8950 -8.7616 3.8322 23 6 8.3914 -7.6577 4.7951 24 1 9.0945 -6.8256 4.8302 25 9 8.1767 -8.1774 6.0761 26 6 7.0543 -7.2201 4.1453 27 6 1.5260 -7.1952 -0.5841 28 6 2.2137 -7.9884 -1.6970 29 6 0.9534 -7.1766 -2.0028 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6791 -4.9561 0.9299 33 1 0.5576 -4.8868 -0.8446 34 1 3.2680 -5.2764 1.5577 35 1 2.1630 -6.6318 1.8896 36 1 3.6276 -8.1460 0.5815 37 1 4.7325 -6.7905 0.2497 38 1 4.3903 -6.9975 3.0459 39 1 7.4762 -10.3929 4.0465 40 1 7.6783 -9.8118 2.3698 41 1 9.5817 -9.4331 4.3476 42 1 9.3763 -8.3173 2.9610 43 1 7.2381 -6.5265 3.3247 44 1 6.3981 -6.7677 4.8887 45 1 0.9792 -7.7586 0.1720 46 1 3.1623 -7.6070 -2.0746 47 1 2.1196 -9.0742 -1.6732 48 1 0.0302 -7.7282 -2.1802 49 1 1.0725 -6.2608 -2.5816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691222746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = -123.745892 kcal Electronic energy + Delta-G solvation = -29764.371992 eV Core-core repulsion = 25447.157493 eV Total energy + Delta-G solvation = -4317.214499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.56056 -41.17288 -40.44684 -38.98491 -37.64911 -36.33077 -35.92892 -34.66758 -33.24674 -31.31315 -29.72445 -29.47551 -27.79427 -25.91314 -24.10431 -23.23756 -22.76318 -21.75752 -21.60029 -20.92012 -20.50392 -19.81879 -18.67418 -17.84869 -17.41533 -17.15668 -16.88580 -16.77370 -16.58590 -16.48499 -15.92188 -15.89603 -15.72761 -15.66515 -15.31845 -14.89769 -14.55596 -14.35951 -14.12279 -13.91975 -13.78387 -13.50022 -13.13074 -13.05664 -12.92089 -12.56987 -12.42214 -12.39428 -12.34635 -12.26068 -12.21354 -12.12021 -11.87468 -11.78776 -11.48794 -11.47080 -11.37032 -11.12430 -10.84120 -10.28454 -10.12880 -9.98128 -9.24850 -8.44864 -5.92994 1.38206 1.42042 1.54139 1.57287 1.98671 2.09913 2.29601 2.70513 2.92877 3.21966 3.22515 3.35148 3.43128 3.65940 3.80091 3.83930 3.99933 4.08037 4.09867 4.13693 4.21450 4.29430 4.34955 4.35561 4.43315 4.44671 4.48957 4.51141 4.56230 4.60168 4.77379 4.81839 4.83779 4.95566 4.98987 5.04027 5.11047 5.12860 5.22997 5.30985 5.35098 5.40719 5.42541 5.84730 6.06140 6.23213 6.49735 6.63172 7.15564 7.19280 7.59730 8.15758 8.72536 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.002532 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.266461 B =11056.200719 C =13464.421448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.064 3.936 13 N -0.508 5.508 14 C 0.062 3.938 15 C 0.142 3.858 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.107 4.107 20 H 0.122 0.878 21 C -0.121 4.121 22 C -0.145 4.145 23 C 0.083 3.917 24 H 0.112 0.888 25 F -0.219 7.219 26 C -0.139 4.139 27 C -0.006 4.006 28 C -0.160 4.160 29 C -0.164 4.164 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.413 0.587 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.121 0.879 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 -18.533 8.634 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.067 4.067 13 N -0.233 5.233 14 C -0.066 4.066 15 C 0.017 3.983 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.459 6.459 19 C -0.128 4.128 20 H 0.140 0.860 21 C -0.158 4.158 22 C -0.183 4.183 23 C 0.047 3.953 24 H 0.129 0.871 25 F -0.200 7.200 26 C -0.177 4.177 27 C -0.114 4.114 28 C -0.198 4.198 29 C -0.201 4.201 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.249 0.751 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.132 0.868 48 H 0.139 0.861 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.493 -18.643 7.601 21.482 hybrid contribution -0.921 1.123 0.645 1.589 sum 6.572 -17.520 8.245 20.448 Atomic orbital electron populations 1.69669 1.06765 1.29171 1.50628 1.25986 0.96508 1.02269 0.96499 0.84974 0.77962 0.77156 0.78539 1.19909 1.19568 1.19728 1.19618 0.92588 0.83998 1.49640 0.90436 1.41930 1.09277 1.04668 1.65493 1.20814 0.88313 0.85870 0.82014 1.90490 1.15672 1.87837 1.55994 1.21660 0.93440 0.88101 1.03510 1.61006 1.29083 1.03894 1.29309 1.22097 0.95406 0.99019 0.90091 1.20969 0.93607 0.98408 0.85289 1.45865 1.32547 1.46471 1.11979 1.21019 0.79388 0.77694 0.91417 1.90662 1.65738 1.51025 1.38515 1.21977 0.98955 0.98224 0.93649 0.86038 1.22164 0.92549 0.97897 1.03233 1.22974 0.97989 0.97798 0.99532 1.22570 0.97748 0.97103 0.77926 0.87054 1.92789 1.96248 1.88980 1.41934 1.23004 0.97102 0.96048 1.01588 1.22586 1.02589 0.93644 0.92584 1.23057 0.96746 0.98569 1.01399 1.23086 0.98381 1.02350 0.96295 0.91388 0.77079 0.90704 0.87545 0.91570 0.92290 0.91118 0.93978 0.75077 0.90039 0.90811 0.89176 0.89418 0.89697 0.87976 0.87503 0.90331 0.86770 0.86063 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.58 -28.98 5.29 -306.98 -1.62 -30.60 16 10 C 0.44 20.50 7.53 87.66 0.66 21.16 16 11 O -0.61 -33.15 14.63 -3.07 -0.04 -33.20 16 12 C 0.06 2.11 5.44 85.56 0.47 2.58 16 13 N -0.51 -15.66 4.22 -875.53 -3.69 -19.36 16 14 C 0.06 1.75 4.68 86.30 0.40 2.15 16 15 C 0.14 3.89 5.58 86.38 0.48 4.37 16 16 N -0.72 -15.91 5.49 -463.05 -2.54 -18.45 16 17 C 0.52 12.39 7.00 87.66 0.61 13.00 16 18 O -0.58 -18.76 15.21 -3.05 -0.05 -18.81 16 19 C -0.11 -1.78 3.29 -10.81 -0.04 -1.82 16 20 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.12 -2.06 6.40 31.32 0.20 -1.86 16 22 C -0.15 -2.03 6.63 31.67 0.21 -1.82 16 23 C 0.08 1.13 4.70 31.91 0.15 1.28 16 24 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 25 F -0.22 -3.85 17.22 44.97 0.77 -3.08 16 26 C -0.14 -2.01 6.10 31.69 0.19 -1.81 16 27 C -0.01 -0.14 4.20 44.92 0.19 0.05 16 28 C -0.16 -3.59 9.70 30.59 0.30 -3.29 16 29 C -0.16 -3.52 9.61 30.60 0.29 -3.23 16 30 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 31 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 32 H 0.08 2.15 7.99 -2.39 -0.02 2.13 16 33 H 0.11 3.21 7.05 -2.39 -0.02 3.19 16 34 H 0.07 2.29 6.61 -2.39 -0.02 2.28 16 35 H 0.06 1.32 8.11 -2.39 -0.02 1.31 16 36 H 0.07 1.89 6.84 -2.38 -0.02 1.88 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.41 6.91 8.46 -92.71 -0.78 6.13 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.63 6.39 -2.39 -0.02 1.61 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.38 7.85 -2.38 -0.02 1.36 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 2.07 8.13 -2.39 -0.02 2.05 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 2.12 7.93 -2.39 -0.02 2.10 16 Total: -1.00 -72.30 402.14 -0.01 -72.30 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.54 Total: 42.52 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.40 Total: 12.94 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -7.58 Total: -117.34 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.01 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.30 -0.01 -72.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.441 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds