Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86808 * 119.99685 * 2 1 4 4 H 1.48500 * 109.46671 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47085 * 299.99719 * 3 2 1 6 6 H 1.48497 * 109.47342 * 60.00097 * 3 2 1 7 7 C 1.38940 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00467 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00175 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00057 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00145 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47295 * 184.47061 * 12 10 9 14 14 C 1.46902 * 111.00075 * 283.94176 * 13 12 10 15 15 C 1.52992 * 109.47325 * 169.99756 * 14 13 12 16 16 N 1.46503 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00250 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99869 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00212 * 179.97438 * 17 16 15 20 20 H 1.09005 * 110.01425 * 58.60696 * 19 17 16 21 21 C 1.54260 * 110.03040 * 297.16413 * 19 17 16 22 22 C 1.54889 * 104.19544 * 217.10367 * 21 19 17 23 23 C 1.54891 * 102.74984 * 37.94307 * 22 21 19 24 24 H 1.09001 * 110.48087 * 80.73219 * 23 22 21 25 25 F 1.39893 * 110.48750 * 203.38196 * 23 22 21 26 26 C 1.53879 * 110.03257 * 179.97438 * 19 17 16 27 27 C 1.46901 * 111.00217 * 159.98743 * 13 12 10 28 28 C 1.53002 * 117.49732 * 11.81889 * 27 13 12 29 29 C 1.53004 * 117.49703 * 303.15802 * 27 13 12 30 30 H 0.97003 * 119.99773 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99920 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47350 * 64.46845 * 12 10 9 33 33 H 1.09003 * 109.46878 * 304.46835 * 12 10 9 34 34 H 1.09007 * 109.47138 * 49.99495 * 14 13 12 35 35 H 1.09004 * 109.46926 * 290.00252 * 14 13 12 36 36 H 1.08996 * 109.47049 * 60.00258 * 15 14 13 37 37 H 1.08995 * 109.47411 * 299.99923 * 15 14 13 38 38 H 0.97002 * 119.99781 * 0.02562 * 16 15 14 39 39 H 1.08990 * 110.48951 * 335.78101 * 21 19 17 40 40 H 1.09007 * 110.48604 * 98.42824 * 21 19 17 41 41 H 1.09006 * 110.75438 * 279.62927 * 22 21 19 42 42 H 1.08998 * 110.91600 * 156.33399 * 22 21 19 43 43 H 1.08998 * 110.03199 * 238.57164 * 26 19 17 44 44 H 1.09002 * 110.03128 * 359.95428 * 26 19 17 45 45 H 1.08994 * 115.54727 * 157.48791 * 27 13 12 46 46 H 1.09003 * 117.49555 * 359.97438 * 28 27 13 47 47 H 1.08994 * 117.50157 * 145.02418 * 28 27 13 48 48 H 1.08994 * 117.49681 * 214.97865 * 29 27 13 49 49 H 1.09003 * 117.49648 * 359.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1948 -5.9774 0.1070 14 6 2.8768 -6.2135 -1.1725 15 6 4.0259 -7.2017 -0.9633 16 7 4.7064 -7.4366 -2.2392 17 6 5.7572 -8.2786 -2.2975 18 8 6.1398 -8.8413 -1.2936 19 6 6.4569 -8.5207 -3.6101 20 1 6.8351 -7.5800 -4.0104 21 6 5.4841 -9.1709 -4.6153 22 6 6.3647 -10.1731 -5.4022 23 6 7.3066 -10.7332 -4.3076 24 1 6.8030 -11.5099 -3.7320 25 9 8.4818 -11.2308 -4.8805 26 6 7.6161 -9.5136 -3.4143 27 6 1.5255 -7.1966 0.5795 28 6 -0.0044 -7.1987 0.6033 29 6 0.7818 -7.1220 1.9146 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6790 -4.9559 -0.9287 33 1 0.5582 -4.8869 0.8459 34 1 3.2724 -5.2715 -1.5527 35 1 2.1686 -6.6264 -1.8910 36 1 3.6304 -8.1436 -0.5832 37 1 4.7340 -6.7887 -0.2450 38 1 4.4007 -6.9862 -3.0421 39 1 4.6863 -9.6953 -4.0895 40 1 5.0697 -8.4185 -5.2865 41 1 6.9349 -9.6606 -6.1771 42 1 5.7578 -10.9690 -5.8338 43 1 8.5563 -9.0550 -3.7205 44 1 7.6730 -9.8197 -2.3696 45 1 2.0263 -8.1331 0.3340 46 1 -0.5141 -6.2952 0.2686 47 1 -0.5100 -8.1366 0.3739 48 1 0.7930 -8.0095 2.5472 49 1 0.7895 -6.1683 2.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691222747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = -120.123356 kcal Electronic energy + Delta-G solvation = -29579.977336 eV Core-core repulsion = 25262.919922 eV Total energy + Delta-G solvation = -4317.057414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.59035 -41.23767 -40.66636 -39.12482 -37.82571 -36.41528 -35.93813 -34.36235 -33.26537 -31.15457 -29.95998 -29.23233 -27.71905 -26.07151 -24.14718 -23.23489 -22.88247 -21.94121 -21.71092 -20.84713 -20.36982 -19.71604 -18.66675 -18.22147 -17.48156 -17.30497 -16.98900 -16.81027 -16.57558 -16.25245 -16.11216 -15.70493 -15.64996 -15.57512 -15.07323 -14.83931 -14.44952 -14.43692 -14.27133 -13.98308 -13.64421 -13.47928 -13.30265 -13.01733 -12.96845 -12.75511 -12.53698 -12.41201 -12.36115 -12.31264 -12.21247 -12.11720 -11.77664 -11.71841 -11.64190 -11.48587 -11.47823 -11.22071 -10.86595 -10.27444 -10.13000 -9.99079 -9.05367 -8.45901 -5.94087 1.36231 1.41865 1.55389 1.57924 1.96708 2.07556 2.29014 2.70779 2.99074 3.20834 3.30451 3.35403 3.45694 3.58412 3.70928 3.79660 3.96058 4.02769 4.09884 4.12131 4.17247 4.19627 4.29054 4.34983 4.37457 4.37750 4.47515 4.48381 4.52953 4.71967 4.81305 4.85382 4.90826 4.95270 4.99045 5.02017 5.10482 5.11765 5.19527 5.27721 5.30449 5.39555 5.42043 5.84686 6.06233 6.17368 6.50622 6.61646 7.14468 7.19961 7.57854 8.13821 8.71570 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002185 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.667867 B =12810.578176 C =14426.574110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.505 5.505 14 C 0.060 3.940 15 C 0.138 3.862 16 N -0.714 5.714 17 C 0.516 3.484 18 O -0.584 6.584 19 C -0.105 4.105 20 H 0.124 0.876 21 C -0.106 4.106 22 C -0.139 4.139 23 C 0.078 3.922 24 H 0.095 0.905 25 F -0.225 7.225 26 C -0.146 4.146 27 C 0.009 3.991 28 C -0.206 4.206 29 C -0.178 4.178 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.415 0.585 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -20.285 -10.850 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.072 4.072 13 N -0.227 5.227 14 C -0.067 4.067 15 C 0.013 3.987 16 N -0.366 5.366 17 C 0.303 3.697 18 O -0.464 6.464 19 C -0.126 4.126 20 H 0.142 0.858 21 C -0.144 4.144 22 C -0.177 4.177 23 C 0.042 3.958 24 H 0.113 0.887 25 F -0.206 7.206 26 C -0.184 4.184 27 C -0.100 4.100 28 C -0.245 4.245 29 C -0.216 4.216 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.114 0.886 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.569 -20.380 -9.801 22.894 hybrid contribution -0.617 1.166 -0.333 1.361 sum 2.952 -19.214 -10.135 21.923 Atomic orbital electron populations 1.69675 1.06728 1.29131 1.50602 1.25991 0.96527 1.02272 0.96485 0.84912 0.78019 0.77363 0.78301 1.19937 1.19499 1.19819 1.19646 0.92582 0.83964 1.49592 0.90452 1.41925 1.09266 1.04660 1.65413 1.20800 0.88320 0.85878 0.82157 1.90495 1.15659 1.87818 1.55965 1.21792 0.93746 0.88332 1.03342 1.61097 1.28646 1.03691 1.29260 1.22094 0.95314 0.99214 0.90127 1.21035 0.93710 0.98315 0.85610 1.45799 1.32463 1.46261 1.12042 1.21075 0.79555 0.77684 0.91366 1.90672 1.65983 1.51081 1.38646 1.21901 0.96324 1.02167 0.92255 0.85766 1.22323 0.96593 0.99056 0.96435 1.23065 0.97633 0.99771 0.97216 1.22649 0.82075 0.96079 0.94989 0.88711 1.92774 1.51733 1.89535 1.86591 1.22716 0.98689 0.95293 1.01719 1.22868 0.92047 0.93198 1.01872 1.23665 0.94621 1.04511 1.01654 1.23151 1.03754 1.03544 0.91176 0.91369 0.77081 0.90413 0.87632 0.91524 0.91813 0.90982 0.93903 0.74806 0.90577 0.87332 0.89153 0.88587 0.89646 0.90473 0.84786 0.88551 0.86612 0.86653 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 3 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -28.83 5.29 -306.99 -1.62 -30.45 16 10 C 0.44 20.40 7.52 87.66 0.66 21.06 16 11 O -0.61 -33.15 14.62 -3.07 -0.04 -33.20 16 12 C 0.06 1.94 4.12 85.56 0.35 2.29 16 13 N -0.50 -15.38 4.31 -875.50 -3.78 -19.16 16 14 C 0.06 1.63 4.68 86.30 0.40 2.04 16 15 C 0.14 3.59 5.67 86.38 0.49 4.08 16 16 N -0.71 -14.58 5.50 -463.08 -2.55 -17.13 16 17 C 0.52 11.62 6.99 87.66 0.61 12.24 16 18 O -0.58 -18.53 15.21 -3.03 -0.05 -18.58 16 19 C -0.11 -1.53 3.30 -10.82 -0.04 -1.56 16 20 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 21 C -0.11 -0.94 6.31 31.67 0.20 -0.74 16 22 C -0.14 -1.30 6.70 31.89 0.21 -1.09 16 23 C 0.08 1.16 4.66 31.69 0.15 1.31 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 25 F -0.23 -4.39 17.17 44.97 0.77 -3.62 16 26 C -0.15 -2.53 6.21 31.34 0.19 -2.33 16 27 C 0.01 0.20 5.83 44.92 0.26 0.47 16 28 C -0.21 -3.91 9.57 30.62 0.29 -3.61 16 29 C -0.18 -3.91 9.90 30.62 0.30 -3.60 16 30 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 32 H 0.08 2.21 7.82 -2.39 -0.02 2.19 16 33 H 0.11 3.22 5.52 -2.39 -0.01 3.20 16 34 H 0.07 2.25 6.60 -2.38 -0.02 2.23 16 35 H 0.06 1.34 8.12 -2.38 -0.02 1.32 16 36 H 0.07 1.76 6.40 -2.39 -0.02 1.75 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.42 6.01 8.47 -92.71 -0.79 5.22 16 39 H 0.08 0.73 7.85 -2.39 -0.02 0.71 16 40 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.08 1.41 8.11 -2.39 -0.02 1.39 16 44 H 0.08 1.76 6.39 -2.39 -0.02 1.74 16 45 H 0.13 2.70 6.34 -2.39 -0.02 2.69 16 46 H 0.10 1.94 6.06 -2.39 -0.01 1.92 16 47 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.08 2.08 7.41 -2.39 -0.02 2.06 16 Total: -1.00 -73.73 396.25 -0.11 -73.84 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.53 Total: 39.56 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.38 Total: 12.77 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.66 Total: -115.37 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.77 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -73.73 -0.11 -73.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.284 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds