Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46908 * 300.00115 * 3 2 1 6 6 H 1.48497 * 109.47198 * 60.00053 * 3 2 1 7 7 C 1.38821 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07984 * 120.00170 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99361 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.65528 * 359.97438 * 9 7 2 11 11 C 1.54901 * 104.83289 * 155.90007 * 10 9 7 12 12 C 1.55159 * 101.58572 * 37.01243 * 11 10 9 13 13 H 1.09000 * 110.72073 * 83.03387 * 12 11 10 14 14 C 1.52997 * 110.72378 * 206.13311 * 12 11 10 15 15 C 1.52997 * 109.47232 * 182.55426 * 14 12 11 16 16 N 1.46496 * 109.47194 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00271 * 179.97438 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.36827 * 125.06207 * 265.02774 * 20 19 17 22 22 C 1.34242 * 109.92705 * 180.02562 * 21 20 19 23 23 C 1.46494 * 106.99773 * 359.97438 * 22 21 20 24 24 C 1.39625 * 134.03247 * 179.97438 * 23 22 21 25 25 C 1.36631 * 119.76522 * 180.02562 * 24 23 22 26 26 C 1.38830 * 120.52456 * 0.02562 * 25 24 23 27 27 C 1.37746 * 120.66684 * 0.02562 * 26 25 24 28 28 C 1.37683 * 125.05955 * 84.72515 * 20 19 17 29 29 C 1.47329 * 125.61283 * 180.19795 * 9 7 2 30 30 H 0.97001 * 119.99784 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.36358 * 37.06293 * 10 9 7 32 32 H 1.08996 * 110.45796 * 274.78705 * 10 9 7 33 33 H 1.08998 * 111.01173 * 278.93294 * 11 10 9 34 34 H 1.09004 * 111.03743 * 155.09720 * 11 10 9 35 35 H 1.09002 * 109.47153 * 62.55434 * 14 12 11 36 36 H 1.09001 * 109.46832 * 302.55625 * 14 12 11 37 37 H 1.09002 * 109.47045 * 59.99942 * 15 14 12 38 38 H 1.09001 * 109.47375 * 299.99867 * 15 14 12 39 39 H 0.97005 * 120.00266 * 0.02562 * 16 15 14 40 40 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 41 41 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 42 42 H 1.07993 * 125.03524 * 359.97356 * 21 20 19 43 43 H 1.07998 * 126.50050 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.12141 * 0.02794 * 24 23 22 45 45 H 1.07999 * 119.73401 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.66243 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.10839 * 179.97438 * 27 26 25 48 48 H 1.09005 * 110.06024 * 61.68049 * 29 9 7 49 49 H 1.09000 * 109.84726 * 300.43017 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5332 0.0005 11 6 -0.4022 -3.9322 -0.6113 12 6 0.7781 -4.7525 -0.0272 13 1 0.5451 -5.1008 0.9790 14 6 1.1222 -5.9313 -0.9398 15 6 2.2448 -6.7558 -0.3067 16 7 2.5737 -7.8848 -1.1803 17 6 3.5411 -8.7530 -0.8241 18 8 4.1390 -8.5998 0.2200 19 6 3.8799 -9.9142 -1.7230 20 7 4.9548 -10.7037 -1.1167 21 6 6.2872 -10.5601 -1.3926 22 6 7.0014 -11.4364 -0.6686 23 6 6.0484 -12.2034 0.1373 24 6 6.1750 -13.2364 1.0681 25 6 5.0592 -13.7540 1.6630 26 6 3.7998 -13.2614 1.3489 27 6 3.6520 -12.2435 0.4327 28 6 4.7750 -11.6967 -0.1800 29 6 1.9336 -3.7300 0.0031 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5999 -1.7587 -0.6147 32 1 -0.5284 -2.4863 1.0185 33 1 -0.3535 -3.8980 -1.6997 34 1 -1.3594 -4.3331 -0.2777 35 1 1.4492 -5.5565 -1.9098 36 1 0.2404 -6.5585 -1.0712 37 1 1.9177 -7.1305 0.6632 38 1 3.1265 -6.1286 -0.1754 39 1 2.0958 -8.0072 -2.0155 40 1 4.2067 -9.5394 -2.6930 41 1 2.9982 -10.5415 -1.8541 42 1 6.7027 -9.8480 -2.0902 43 1 8.0750 -11.5531 -0.6778 44 1 7.1515 -13.6248 1.3171 45 1 5.1577 -14.5532 2.3826 46 1 2.9271 -13.6811 1.8272 47 1 2.6679 -11.8674 0.1947 48 1 2.5280 -3.8687 0.9062 49 1 2.5616 -3.8540 -0.8791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691924412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = 29.332511 kcal Electronic energy + Delta-G solvation = -28232.167349 eV Core-core repulsion = 24352.360052 eV Total energy + Delta-G solvation = -3879.807297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32784 -40.62996 -39.40543 -37.86523 -36.49375 -34.80856 -33.92758 -32.55616 -31.42343 -30.68879 -29.77928 -28.65370 -27.50159 -26.32791 -23.84976 -23.47597 -22.54732 -22.10617 -21.83384 -21.14909 -20.65329 -18.91457 -18.47916 -18.18464 -17.40872 -17.10680 -16.70944 -16.62541 -16.30355 -16.26827 -15.61625 -15.47651 -15.18107 -14.81109 -14.65926 -14.39450 -14.28898 -13.97765 -13.83529 -13.55688 -13.49781 -13.35244 -13.19031 -12.99739 -12.83764 -12.72572 -12.50714 -12.47925 -12.24538 -11.99203 -11.80060 -11.74309 -11.59797 -11.45904 -11.28963 -11.07611 -10.76941 -10.53826 -10.16836 -9.08187 -8.89820 -8.57248 -7.79692 -5.23938 0.23425 0.70685 1.43814 1.44939 1.48828 1.55358 1.57340 1.90136 2.28368 2.47331 3.02652 3.29226 3.63896 3.72177 3.73690 3.78178 3.81947 3.92514 3.98737 4.13238 4.16383 4.18336 4.29517 4.31103 4.33854 4.56854 4.60049 4.61436 4.69744 4.72473 4.79201 4.86970 4.94673 5.00990 5.06744 5.09971 5.17103 5.18446 5.24778 5.37936 5.42233 5.50054 5.57470 5.67820 5.71503 5.82109 5.86175 5.88657 6.30513 6.30721 6.31365 6.53796 7.09879 7.17775 7.77467 8.41203 9.22049 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.001759 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.901614 B =15913.959874 C =16468.372376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.120 4.120 12 C -0.085 4.085 13 H 0.075 0.925 14 C -0.098 4.098 15 C 0.125 3.875 16 N -0.708 5.708 17 C 0.486 3.514 18 O -0.579 6.579 19 C 0.094 3.906 20 N -0.475 5.475 21 C 0.056 3.944 22 C -0.225 4.225 23 C -0.139 4.139 24 C -0.088 4.088 25 C -0.155 4.155 26 C -0.109 4.109 27 C -0.141 4.141 28 C 0.083 3.917 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.072 0.928 32 H -0.019 1.019 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.422 0.578 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.196 0.804 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.126 0.874 48 H 0.008 0.992 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -29.721 -7.364 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.105 4.105 13 H 0.093 0.907 14 C -0.136 4.136 15 C 0.001 3.999 16 N -0.362 5.362 17 C 0.272 3.728 18 O -0.458 6.458 19 C -0.031 4.031 20 N -0.158 5.158 21 C -0.069 4.069 22 C -0.250 4.250 23 C -0.144 4.144 24 C -0.106 4.106 25 C -0.174 4.174 26 C -0.128 4.128 27 C -0.162 4.162 28 C -0.022 4.022 29 C 0.008 3.992 30 H 0.057 0.943 31 H 0.090 0.910 32 H -0.001 1.001 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.260 0.740 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.213 0.787 43 H 0.178 0.822 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.144 0.856 48 H 0.026 0.974 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.949 -29.201 -6.795 30.566 hybrid contribution 0.244 1.542 0.276 1.586 sum 6.193 -27.659 -6.520 29.084 Atomic orbital electron populations 1.70067 1.06129 1.24938 1.58675 1.25647 0.96724 1.00981 1.02807 0.84980 0.77978 0.79323 0.76880 1.19354 1.21388 1.21970 1.19486 0.90910 0.84079 1.42439 0.90599 1.44957 1.02946 1.00971 1.86693 1.21768 0.83868 0.95739 0.96318 1.22870 0.97849 0.94965 1.00198 1.22015 0.94761 0.94007 0.99701 0.90682 1.21623 0.98283 0.95119 0.98567 1.21247 0.97947 0.87022 0.93706 1.45820 1.37978 1.26926 1.25460 1.21641 0.79570 0.84517 0.87109 1.90790 1.52739 1.75292 1.26975 1.21886 0.92974 0.91313 0.96922 1.43586 1.06413 1.29941 1.35863 1.22321 0.81549 1.00967 1.02015 1.21978 0.99340 1.01171 1.02462 1.19665 0.93180 1.00179 1.01366 1.20571 0.99841 0.95037 0.95177 1.20954 0.92189 1.02189 1.02088 1.21147 0.98563 0.96089 0.97003 1.20271 0.96183 0.99563 1.00181 1.18527 0.96139 0.92852 0.94699 1.21627 0.95301 0.85073 0.97155 0.94306 0.91002 1.00106 0.91125 0.89575 0.90340 0.88128 0.92550 0.93642 0.74034 0.82185 0.83880 0.78704 0.82178 0.84758 0.83914 0.83690 0.85586 0.97430 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.86 10.28 84.04 0.86 -13.00 16 8 H 0.08 4.26 7.83 -2.92 -0.02 4.23 16 9 N -0.63 -33.20 3.40 -691.22 -2.35 -35.55 16 10 C 0.15 7.32 5.89 86.85 0.51 7.83 16 11 C -0.12 -4.13 6.54 31.98 0.21 -3.92 16 12 C -0.09 -2.63 2.95 -9.61 -0.03 -2.66 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C -0.10 -2.00 4.72 30.59 0.14 -1.85 16 15 C 0.12 2.77 5.54 86.38 0.48 3.25 16 16 N -0.71 -10.85 5.56 -463.07 -2.57 -13.43 16 17 C 0.49 9.61 7.90 87.66 0.69 10.30 16 18 O -0.58 -18.76 16.42 -3.02 -0.05 -18.81 16 19 C 0.09 1.05 6.48 85.63 0.55 1.60 16 20 N -0.47 -8.96 2.27 -519.98 -1.18 -10.14 16 21 C 0.06 0.99 11.27 83.00 0.94 1.92 16 22 C -0.23 -4.54 11.08 23.51 0.26 -4.28 16 23 C -0.14 -3.28 6.37 -20.20 -0.13 -3.41 16 24 C -0.09 -1.78 10.05 22.23 0.22 -1.56 16 25 C -0.16 -2.77 9.97 22.04 0.22 -2.55 16 26 C -0.11 -1.97 10.01 22.29 0.22 -1.74 16 27 C -0.14 -2.90 10.00 22.37 0.22 -2.67 16 28 C 0.08 1.92 6.80 39.03 0.27 2.19 16 29 C 0.13 5.53 6.13 86.67 0.53 6.06 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.07 4.04 5.87 -2.38 -0.01 4.03 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.28 7.58 -2.39 -0.02 1.26 16 39 H 0.42 2.87 8.47 -92.70 -0.79 2.09 16 40 H 0.16 0.51 8.12 -2.39 -0.02 0.50 16 41 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 45 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 49 H 0.03 1.14 7.73 -2.39 -0.02 1.12 16 Total: -1.00 -84.18 401.37 2.89 -81.28 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.16 Total: 13.18 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 6.65 Total: -8.04 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.89 Total: -116.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -84.18 2.89 -81.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691924412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.617 kcal (2) G-P(sol) polarization free energy of solvation -84.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds