Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86810 * 120.00179 * 2 1 4 4 H 1.48498 * 109.46826 * 240.00257 * 3 2 1 5 5 H 1.48495 * 109.46468 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47145 * 120.00287 * 3 2 1 7 7 C 1.38952 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00169 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99692 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00329 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46990 * 180.02562 * 12 10 9 14 14 C 1.47530 * 110.99781 * 190.00318 * 13 12 10 15 15 C 1.55016 * 107.08464 * 237.94718 * 14 13 12 16 16 H 1.09002 * 112.12786 * 216.31066 * 15 14 13 17 17 C 1.52963 * 107.10105 * 92.64492 * 15 14 13 18 18 C 1.52726 * 110.87022 * 194.14241 * 17 15 14 19 19 C 1.53025 * 108.49244 * 63.70387 * 18 17 15 20 20 N 1.46796 * 107.78342 * 302.00240 * 19 18 17 21 21 C 1.34780 * 119.52948 * 231.93428 * 20 19 18 22 22 O 1.21280 * 120.00423 * 179.72809 * 21 20 19 23 23 C 1.50701 * 119.99795 * 359.73485 * 21 20 19 24 24 C 1.52997 * 109.47212 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47482 * 179.97438 * 24 23 21 26 26 F 1.39906 * 109.47544 * 179.97438 * 25 24 23 27 27 C 1.45029 * 120.94404 * 51.66410 * 20 19 18 28 28 H 1.09001 * 109.87055 * 192.77178 * 27 20 19 29 29 C 1.48088 * 111.00094 * 69.15885 * 13 12 10 30 30 H 0.97003 * 119.99941 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00409 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46728 * 60.00493 * 12 10 9 33 33 H 1.08999 * 109.47303 * 300.00752 * 12 10 9 34 34 H 1.08994 * 109.91100 * 118.58578 * 14 13 12 35 35 H 1.09000 * 110.07004 * 357.40255 * 14 13 12 36 36 H 1.09000 * 109.19869 * 314.50461 * 17 15 14 37 37 H 1.09001 * 109.20094 * 73.82975 * 17 15 14 38 38 H 1.09005 * 109.67915 * 183.55400 * 18 17 15 39 39 H 1.08997 * 109.67981 * 304.06402 * 18 17 15 40 40 H 1.08995 * 109.77645 * 182.39013 * 19 18 17 41 41 H 1.08996 * 109.67689 * 61.55237 * 19 18 17 42 42 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 43 43 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 44 44 H 1.09002 * 109.47153 * 299.99998 * 24 23 21 45 45 H 1.08998 * 109.47533 * 59.99628 * 24 23 21 46 46 H 1.09002 * 109.47103 * 300.00247 * 25 24 23 47 47 H 1.09001 * 109.47066 * 60.00169 * 25 24 23 48 48 H 1.09000 * 110.45987 * 26.99921 * 29 13 12 49 49 H 1.09006 * 110.45462 * 264.44065 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.5110 -7.2628 -0.2371 15 6 1.8210 -8.1778 0.9752 16 1 1.9418 -9.2208 0.6822 17 6 0.6887 -7.9852 1.9854 18 6 1.0687 -8.5656 3.3460 19 6 2.2655 -7.7826 3.8904 20 7 3.3542 -7.8898 2.9116 21 6 4.5743 -8.2944 3.3169 22 8 5.4788 -8.3908 2.5146 23 6 4.8147 -8.6271 4.7669 24 6 6.2709 -9.0564 4.9570 25 6 6.5152 -9.3936 6.4292 26 9 7.8466 -9.7868 6.6030 27 6 3.1343 -7.5723 1.5138 28 1 3.9763 -7.9232 0.9172 29 6 2.9172 -6.0626 1.2937 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6169 -4.9209 -0.8887 33 1 0.6174 -4.9205 0.8913 34 1 1.8859 -7.7200 -1.1527 35 1 0.4358 -7.1023 -0.3158 36 1 0.4830 -6.9204 2.0946 37 1 -0.2071 -8.4874 1.6198 38 1 0.2265 -8.4747 4.0320 39 1 1.3397 -9.6154 3.2345 40 1 2.5814 -8.2073 4.8432 41 1 1.9897 -6.7366 4.0238 42 1 4.6115 -7.7489 5.3797 43 1 4.1543 -9.4406 5.0674 44 1 6.4737 -9.9348 4.3442 45 1 6.9317 -8.2434 4.6564 46 1 6.3125 -8.5151 7.0417 47 1 5.8545 -10.2067 6.7302 48 1 2.3089 -5.6443 2.0957 49 1 3.8745 -5.5452 1.2311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700019354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -121.721586 kcal Electronic energy + Delta-G solvation = -30596.100755 eV Core-core repulsion = 26278.974036 eV Total energy + Delta-G solvation = -4317.126719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.89694 -41.07477 -39.15516 -37.91062 -36.01458 -34.39658 -33.89184 -33.14812 -31.56747 -31.07595 -28.85593 -27.52421 -26.98551 -25.24639 -24.01331 -22.92158 -22.39270 -21.03002 -20.44279 -19.14377 -18.59958 -17.84471 -17.58483 -16.86898 -16.47829 -16.19488 -15.78561 -15.63244 -15.47549 -15.07256 -14.76572 -14.45190 -14.39777 -14.28142 -14.15439 -13.73470 -13.59175 -13.33932 -13.05321 -12.87059 -12.57767 -12.44848 -12.17451 -11.91067 -11.73997 -11.72805 -11.50450 -11.47085 -11.38122 -11.29208 -11.04111 -11.00651 -10.97862 -10.84832 -10.44009 -10.39475 -10.20057 -9.92914 -9.47554 -8.76601 -8.44027 -7.95926 -7.85947 -6.40524 -3.81058 2.43230 2.70368 3.20894 3.26152 3.30993 3.92320 3.99674 4.05207 4.26491 4.28872 4.33860 4.38347 4.54181 4.56598 4.64227 4.67309 4.73753 4.81261 4.84963 5.01520 5.07844 5.13147 5.19110 5.24208 5.31359 5.34752 5.37368 5.43569 5.44694 5.59497 5.60152 5.65535 5.72394 5.79723 5.87300 5.88982 5.98268 6.04559 6.13523 6.28615 6.37420 6.50674 7.17290 7.21956 7.24652 7.56234 8.00461 8.07597 8.63786 9.19906 9.56028 10.08623 10.77304 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002538 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.157083 B =11029.120798 C =12443.600195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.043 3.957 13 N -0.501 5.501 14 C 0.044 3.956 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.117 4.117 18 C -0.133 4.133 19 C 0.102 3.898 20 N -0.597 5.597 21 C 0.512 3.488 22 O -0.533 6.533 23 C -0.138 4.138 24 C -0.140 4.140 25 C 0.062 3.938 26 F -0.218 7.218 27 C 0.133 3.867 28 H 0.110 0.890 29 C 0.052 3.948 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -21.002 12.015 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.089 4.089 13 N -0.225 5.225 14 C -0.084 4.084 15 C -0.137 4.137 16 H 0.108 0.892 17 C -0.154 4.154 18 C -0.171 4.171 19 C -0.021 4.021 20 N -0.330 5.330 21 C 0.300 3.700 22 O -0.409 6.409 23 C -0.178 4.178 24 C -0.178 4.178 25 C 0.007 3.993 26 F -0.199 7.199 27 C 0.028 3.972 28 H 0.128 0.872 29 C -0.077 4.077 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.227 -20.775 11.177 23.592 hybrid contribution -1.081 0.870 0.620 1.520 sum -0.854 -19.905 11.797 23.154 Atomic orbital electron populations 1.69601 1.05909 1.28180 1.50848 1.25242 0.95626 0.99653 0.97432 0.85932 0.78766 0.80523 0.79095 1.19876 1.21000 1.19955 1.19642 0.93313 0.82233 1.47507 0.88029 1.41850 1.09100 1.04569 1.64858 1.19754 0.88458 0.84515 0.84419 1.90527 1.13645 1.86956 1.54679 1.22122 0.93833 0.91635 1.01318 1.63313 1.25690 1.01318 1.32181 1.23108 0.97998 0.89661 0.97656 1.22664 0.94772 1.00149 0.96126 0.89190 1.21577 0.97784 1.01582 0.94486 1.21802 0.97788 1.00032 0.97478 1.21819 0.87336 1.01266 0.91683 1.47454 1.10232 1.66606 1.08664 1.20616 0.81989 0.76613 0.90739 1.90734 1.42374 1.52376 1.55461 1.21585 0.98307 1.03556 0.94331 1.21931 0.95985 1.04258 0.95664 1.21994 0.78734 1.01026 0.97508 1.92779 1.37748 1.92825 1.96568 1.21604 0.98651 0.95467 0.81430 0.87177 1.23157 1.00763 0.94263 0.89515 0.91885 0.77587 0.89300 0.93556 0.90268 0.92127 0.91643 0.91384 0.90440 0.91311 0.89374 0.90864 0.88372 0.88570 0.89929 0.89719 0.90661 0.90820 0.93824 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 10 C 0.44 10.54 7.58 -10.98 -0.08 10.45 16 11 O -0.57 -15.80 14.63 5.54 0.08 -15.72 16 12 C 0.04 0.75 5.06 -4.98 -0.03 0.73 16 13 N -0.50 -8.35 4.87 -232.48 -1.13 -9.49 16 14 C 0.04 0.54 6.23 -2.41 -0.02 0.53 16 15 C -0.12 -1.23 3.59 -88.89 -0.32 -1.55 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 17 C -0.12 -1.01 4.65 -26.89 -0.13 -1.14 16 18 C -0.13 -0.90 6.09 -26.86 -0.16 -1.06 16 19 C 0.10 0.77 6.05 -3.87 -0.02 0.74 16 20 N -0.60 -6.51 2.74 -165.49 -0.45 -6.96 16 21 C 0.51 5.99 7.65 -10.98 -0.08 5.91 16 22 O -0.53 -8.58 15.30 5.56 0.09 -8.50 16 23 C -0.14 -0.97 4.01 -27.88 -0.11 -1.08 16 24 C -0.14 -1.14 4.96 -26.74 -0.13 -1.27 16 25 C 0.06 0.40 7.55 37.15 0.28 0.68 16 26 F -0.22 -2.18 17.36 2.25 0.04 -2.14 16 27 C 0.13 1.75 3.04 -67.46 -0.20 1.55 16 28 H 0.11 1.72 6.95 -51.93 -0.36 1.36 16 29 C 0.05 0.85 4.92 -2.60 -0.01 0.83 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.09 1.42 8.02 -51.93 -0.42 1.01 16 33 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.66 7.16 -51.93 -0.37 0.29 16 36 H 0.06 0.67 6.97 -51.93 -0.36 0.31 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.41 5.81 -51.93 -0.30 0.11 16 41 H 0.07 0.61 7.61 -51.93 -0.40 0.22 16 42 H 0.10 0.53 7.94 -51.93 -0.41 0.11 16 43 H 0.10 0.42 7.60 -51.93 -0.39 0.02 16 44 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 45 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.04 0.71 6.42 -51.93 -0.33 0.37 16 49 H 0.10 1.95 7.42 -51.93 -0.39 1.57 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -34.59 386.76 -8.93 -43.52 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.76 Total: 8.23 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.26 Total: 7.33 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.92 Total: -54.75 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.22 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.59 -8.93 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700019354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.198 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds