Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86810 * 120.00179 * 2 1 4 4 H 1.48498 * 109.46826 * 240.00257 * 3 2 1 5 5 H 1.48495 * 109.46468 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47145 * 120.00287 * 3 2 1 7 7 C 1.38952 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00169 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99692 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00329 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46990 * 180.02562 * 12 10 9 14 14 C 1.47530 * 110.99781 * 190.00318 * 13 12 10 15 15 C 1.55016 * 107.08464 * 237.94718 * 14 13 12 16 16 H 1.09002 * 112.12786 * 216.31066 * 15 14 13 17 17 C 1.52963 * 107.10105 * 92.64492 * 15 14 13 18 18 C 1.52726 * 110.87022 * 194.14241 * 17 15 14 19 19 C 1.53025 * 108.49244 * 63.70387 * 18 17 15 20 20 N 1.46796 * 107.78342 * 302.00240 * 19 18 17 21 21 C 1.34780 * 119.52948 * 231.93428 * 20 19 18 22 22 O 1.21280 * 120.00423 * 179.72809 * 21 20 19 23 23 C 1.50701 * 119.99795 * 359.73485 * 21 20 19 24 24 C 1.52997 * 109.47212 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47482 * 179.97438 * 24 23 21 26 26 F 1.39906 * 109.47544 * 179.97438 * 25 24 23 27 27 C 1.45029 * 120.94404 * 51.66410 * 20 19 18 28 28 H 1.09001 * 109.87055 * 192.77178 * 27 20 19 29 29 C 1.48088 * 111.00094 * 69.15885 * 13 12 10 30 30 H 0.97003 * 119.99941 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00409 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46728 * 60.00493 * 12 10 9 33 33 H 1.08999 * 109.47303 * 300.00752 * 12 10 9 34 34 H 1.08994 * 109.91100 * 118.58578 * 14 13 12 35 35 H 1.09000 * 110.07004 * 357.40255 * 14 13 12 36 36 H 1.09000 * 109.19869 * 314.50461 * 17 15 14 37 37 H 1.09001 * 109.20094 * 73.82975 * 17 15 14 38 38 H 1.09005 * 109.67915 * 183.55400 * 18 17 15 39 39 H 1.08997 * 109.67981 * 304.06402 * 18 17 15 40 40 H 1.08995 * 109.77645 * 182.39013 * 19 18 17 41 41 H 1.08996 * 109.67689 * 61.55237 * 19 18 17 42 42 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 43 43 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 44 44 H 1.09002 * 109.47153 * 299.99998 * 24 23 21 45 45 H 1.08998 * 109.47533 * 59.99628 * 24 23 21 46 46 H 1.09002 * 109.47103 * 300.00247 * 25 24 23 47 47 H 1.09001 * 109.47066 * 60.00169 * 25 24 23 48 48 H 1.09000 * 110.45987 * 26.99921 * 29 13 12 49 49 H 1.09006 * 110.45462 * 264.44065 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.5110 -7.2628 -0.2371 15 6 1.8210 -8.1778 0.9752 16 1 1.9418 -9.2208 0.6822 17 6 0.6887 -7.9852 1.9854 18 6 1.0687 -8.5656 3.3460 19 6 2.2655 -7.7826 3.8904 20 7 3.3542 -7.8898 2.9116 21 6 4.5743 -8.2944 3.3169 22 8 5.4788 -8.3908 2.5146 23 6 4.8147 -8.6271 4.7669 24 6 6.2709 -9.0564 4.9570 25 6 6.5152 -9.3936 6.4292 26 9 7.8466 -9.7868 6.6030 27 6 3.1343 -7.5723 1.5138 28 1 3.9763 -7.9232 0.9172 29 6 2.9172 -6.0626 1.2937 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6169 -4.9209 -0.8887 33 1 0.6174 -4.9205 0.8913 34 1 1.8859 -7.7200 -1.1527 35 1 0.4358 -7.1023 -0.3158 36 1 0.4830 -6.9204 2.0946 37 1 -0.2071 -8.4874 1.6198 38 1 0.2265 -8.4747 4.0320 39 1 1.3397 -9.6154 3.2345 40 1 2.5814 -8.2073 4.8432 41 1 1.9897 -6.7366 4.0238 42 1 4.6115 -7.7489 5.3797 43 1 4.1543 -9.4406 5.0674 44 1 6.4737 -9.9348 4.3442 45 1 6.9317 -8.2434 4.6564 46 1 6.3125 -8.5151 7.0417 47 1 5.8545 -10.2067 6.7302 48 1 2.3089 -5.6443 2.0957 49 1 3.8745 -5.5452 1.2311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700019354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -147.109772 kcal Electronic energy + Delta-G solvation = -30597.201669 eV Core-core repulsion = 26278.974036 eV Total energy + Delta-G solvation = -4318.227633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.54370 -42.03152 -40.43728 -39.50632 -37.08461 -35.92357 -35.07468 -34.00452 -33.33155 -32.45288 -29.81496 -28.78545 -27.88145 -26.65370 -25.37223 -23.71241 -23.09189 -22.19587 -21.34306 -20.89663 -19.88791 -19.45090 -18.43892 -17.79540 -17.45739 -17.34617 -16.85125 -16.68416 -16.43621 -16.35123 -15.99621 -15.88386 -15.57731 -15.29034 -15.09968 -14.85515 -14.81450 -14.39183 -14.19725 -13.95958 -13.80489 -13.65114 -13.51240 -13.09733 -12.97310 -12.82318 -12.64231 -12.45857 -12.45285 -12.42704 -12.25031 -12.13952 -11.98873 -11.84093 -11.66654 -11.54356 -11.50873 -11.31377 -10.85640 -10.33886 -10.02540 -9.67983 -9.21300 -8.47950 -5.96498 1.37621 1.39494 1.50284 1.54947 1.86538 2.04220 2.27372 2.83083 3.18196 3.27791 3.40555 3.51065 3.64259 3.69938 3.85190 3.87876 3.96523 4.04229 4.10948 4.17069 4.22828 4.23975 4.32361 4.37335 4.41026 4.47427 4.51938 4.58247 4.63523 4.65804 4.71686 4.76439 4.86287 4.91047 4.98192 4.99952 5.09242 5.16540 5.22113 5.26203 5.38914 5.42117 5.54236 5.84657 5.97567 6.10959 6.35763 6.60065 7.12057 7.12720 7.55015 8.12283 8.69201 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002538 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.157083 B =11029.120798 C =12443.600195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.074 0.926 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.620 6.620 12 C 0.058 3.942 13 N -0.529 5.529 14 C 0.043 3.957 15 C -0.102 4.102 16 H 0.107 0.893 17 C -0.116 4.116 18 C -0.126 4.126 19 C 0.093 3.907 20 N -0.596 5.596 21 C 0.500 3.500 22 O -0.592 6.592 23 C -0.126 4.126 24 C -0.139 4.139 25 C 0.061 3.939 26 F -0.241 7.241 27 C 0.140 3.860 28 H 0.075 0.925 29 C 0.062 3.938 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.044 0.956 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -22.475 14.108 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.092 0.908 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.506 6.506 12 C -0.073 4.073 13 N -0.254 5.254 14 C -0.084 4.084 15 C -0.122 4.122 16 H 0.125 0.875 17 C -0.154 4.154 18 C -0.164 4.164 19 C -0.028 4.028 20 N -0.327 5.327 21 C 0.291 3.709 22 O -0.472 6.472 23 C -0.165 4.165 24 C -0.177 4.177 25 C 0.007 3.993 26 F -0.223 7.223 27 C 0.034 3.966 28 H 0.093 0.907 29 C -0.067 4.067 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.124 0.876 48 H 0.062 0.938 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.722 -22.264 13.292 26.073 hybrid contribution -0.159 1.337 -0.084 1.349 sum -2.881 -20.927 13.208 24.914 Atomic orbital electron populations 1.69652 1.06674 1.29355 1.50252 1.25988 0.96565 1.02208 0.96291 0.85035 0.77839 0.76882 0.78858 1.19967 1.19149 1.19796 1.19569 0.92521 0.84123 1.50110 0.90795 1.41901 1.09259 1.04585 1.65376 1.20888 0.88300 0.86104 0.82206 1.90507 1.16032 1.87913 1.56135 1.21973 0.93340 0.88480 1.03538 1.63131 1.26715 1.03079 1.32468 1.23209 0.98927 0.87647 0.98623 1.22621 0.93645 1.00211 0.95693 0.87509 1.21600 0.97492 1.01087 0.95221 1.21805 0.97964 1.00062 0.96560 1.22182 0.86778 1.01460 0.92384 1.47608 1.11189 1.65693 1.08232 1.21602 0.81329 0.75553 0.92438 1.90711 1.44179 1.54914 1.57415 1.21636 0.98066 1.05983 0.90828 1.21869 0.96471 1.02366 0.97033 1.22219 0.77841 1.03215 0.96056 1.92732 1.39857 1.93138 1.96560 1.21271 0.99108 0.93175 0.83094 0.90700 1.22854 0.98006 0.96194 0.89686 0.91231 0.76935 0.86945 0.90992 0.90147 0.89735 0.93210 0.89235 0.87863 0.90260 0.85556 0.91820 0.85863 0.84380 0.91735 0.92862 0.88479 0.87574 0.93765 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 8 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -29.92 5.29 -306.97 -1.62 -31.54 16 10 C 0.44 21.54 7.58 87.65 0.66 22.20 16 11 O -0.62 -36.21 14.63 -3.08 -0.05 -36.26 16 12 C 0.06 2.03 5.06 85.56 0.43 2.46 16 13 N -0.53 -17.97 4.87 -889.43 -4.33 -22.30 16 14 C 0.04 1.00 6.23 86.87 0.54 1.54 16 15 C -0.10 -1.96 3.59 -9.67 -0.03 -1.99 16 16 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 17 C -0.12 -1.61 4.65 30.49 0.14 -1.47 16 18 C -0.13 -1.14 6.09 30.51 0.19 -0.95 16 19 C 0.09 1.11 6.05 86.33 0.52 1.63 16 20 N -0.60 -12.58 2.74 -795.87 -2.18 -14.76 16 21 C 0.50 11.74 7.65 87.66 0.67 12.41 16 22 O -0.59 -20.55 15.30 -3.03 -0.05 -20.60 16 23 C -0.13 -1.46 4.01 29.85 0.12 -1.34 16 24 C -0.14 -2.21 4.96 30.59 0.15 -2.06 16 25 C 0.06 0.64 7.55 71.98 0.54 1.19 16 26 F -0.24 -4.67 17.36 44.97 0.78 -3.89 16 27 C 0.14 3.78 3.04 46.08 0.14 3.92 16 28 H 0.07 2.55 6.95 -2.39 -0.02 2.54 16 29 C 0.06 2.14 4.92 86.45 0.43 2.57 16 30 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 32 H 0.11 3.42 8.02 -2.39 -0.02 3.40 16 33 H 0.07 2.17 7.62 -2.39 -0.02 2.15 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.58 7.16 -2.39 -0.02 1.56 16 36 H 0.05 0.87 6.97 -2.39 -0.02 0.85 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 0.53 5.81 -2.39 -0.01 0.52 16 41 H 0.06 0.92 7.61 -2.39 -0.02 0.90 16 42 H 0.12 0.88 7.94 -2.39 -0.02 0.86 16 43 H 0.14 0.50 7.60 -2.39 -0.02 0.49 16 44 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 46 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.04 1.49 6.42 -2.39 -0.02 1.47 16 49 H 0.04 1.74 7.42 -2.38 -0.02 1.72 16 Total: -1.00 -83.25 386.76 0.88 -82.37 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.23 Total: 29.19 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.79 Total: 21.49 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -7.85 Total: -117.87 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.09 Total: -56.86 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -83.25 0.88 -82.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700019354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.744 kcal (2) G-P(sol) polarization free energy of solvation -83.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds