Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99703 * 2 1 4 4 H 1.48494 * 109.47290 * 269.99950 * 3 2 1 5 5 H 1.48504 * 109.47089 * 29.99416 * 3 2 1 6 6 H 1.48497 * 109.47123 * 149.99420 * 3 2 1 7 7 C 1.38809 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99777 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00065 * 180.28073 * 9 7 2 11 11 C 1.53002 * 109.47319 * 179.72418 * 10 9 7 12 12 H 1.08996 * 110.88390 * 57.42163 * 11 10 9 13 13 C 1.55155 * 111.00159 * 181.35029 * 11 10 9 14 14 C 1.54330 * 102.93877 * 153.57536 * 13 11 10 15 15 N 1.47011 * 107.27104 * 337.80261 * 14 13 11 16 16 C 1.34782 * 125.64939 * 178.98039 * 15 14 13 17 17 O 1.21592 * 120.00051 * 174.75642 * 16 15 14 18 18 C 1.47520 * 119.99748 * 354.74856 * 16 15 14 19 19 C 1.39799 * 120.06809 * 7.71978 * 18 16 15 20 20 C 1.37616 * 119.92757 * 179.71895 * 19 18 16 21 21 C 1.39221 * 120.07005 * 0.54403 * 20 19 18 22 22 N 1.39033 * 119.93044 * 179.74297 * 21 20 19 23 23 C 1.48234 * 110.99660 * 119.87981 * 22 21 20 24 24 C 1.51121 * 105.35953 * 144.90176 * 23 22 21 25 25 C 1.30964 * 109.45477 * 343.02342 * 24 23 22 26 26 C 1.48226 * 111.00136 * 233.51830 * 22 21 20 27 27 C 1.39218 * 120.13524 * 359.72992 * 21 20 19 28 28 C 1.37609 * 120.07276 * 359.97438 * 27 21 20 29 29 C 1.47430 * 108.70593 * 358.94185 * 15 14 13 30 30 H 0.97007 * 120.00371 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99516 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47109 * 299.72422 * 10 9 7 33 33 H 1.09004 * 109.47318 * 59.71750 * 10 9 7 34 34 H 1.08998 * 110.71662 * 271.93154 * 13 11 10 35 35 H 1.08998 * 110.72701 * 35.21161 * 13 11 10 36 36 H 1.09005 * 109.88090 * 218.38414 * 14 13 11 37 37 H 1.09003 * 110.00885 * 97.29656 * 14 13 11 38 38 H 1.07993 * 120.03328 * 359.96791 * 19 18 16 39 39 H 1.07995 * 119.96251 * 180.25100 * 20 19 18 40 40 H 1.08999 * 110.26896 * 263.87190 * 23 22 21 41 41 H 1.08995 * 110.26751 * 25.93318 * 23 22 21 42 42 H 1.08002 * 125.27474 * 163.04953 * 24 23 22 43 43 H 1.08002 * 125.27144 * 180.02562 * 25 24 23 44 44 H 1.08994 * 110.26893 * 334.07049 * 26 22 21 45 45 H 1.08997 * 110.26915 * 96.04158 * 26 22 21 46 46 H 1.07998 * 119.96493 * 179.97438 * 27 21 20 47 47 H 1.08000 * 120.03895 * 180.02562 * 28 27 21 48 48 H 1.09000 * 110.36267 * 265.28905 * 29 15 14 49 49 H 1.09000 * 110.36855 * 142.97029 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4706 -0.0046 11 6 5.6165 -2.1910 -0.0096 12 1 5.9015 -1.5828 0.8488 13 6 6.4277 -3.5130 -0.0498 14 6 7.7511 -3.0861 -0.7193 15 7 7.4791 -1.8578 -1.4799 16 6 8.3846 -1.1580 -2.1919 17 8 8.0286 -0.2074 -2.8613 18 6 9.8077 -1.5454 -2.1590 19 6 10.1971 -2.7282 -1.5237 20 6 11.5247 -3.0897 -1.4997 21 6 12.4809 -2.2732 -2.0975 22 7 13.8220 -2.6386 -2.0669 23 6 14.3595 -2.8016 -3.4387 24 6 15.7910 -2.3226 -3.3673 25 6 15.9597 -1.6126 -2.2798 26 6 14.6579 -1.5458 -1.5152 27 6 12.0969 -1.0918 -2.7259 28 6 10.7702 -0.7278 -2.7586 29 6 6.0516 -1.5186 -1.3356 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3619 0.0007 32 1 3.8523 -3.0442 0.8851 33 1 3.8455 -3.0403 -0.8948 34 1 6.6082 -3.8854 0.9585 35 1 5.9146 -4.2622 -0.6528 36 1 8.0957 -3.8707 -1.3930 37 1 8.5078 -2.8916 0.0408 38 1 9.4564 -3.3596 -1.0557 39 1 11.8257 -4.0054 -1.0126 40 1 14.3265 -3.8501 -3.7350 41 1 13.7920 -2.1918 -4.1415 42 1 16.5563 -2.5328 -4.0998 43 1 16.8856 -1.1466 -1.9766 44 1 14.1744 -0.5824 -1.6765 45 1 14.8345 -1.7057 -0.4516 46 1 12.8410 -0.4603 -3.1884 47 1 10.4729 0.1886 -3.2466 48 1 5.4796 -1.9219 -2.1712 49 1 5.9229 -0.4380 -1.2731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713354122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = 80.442511 kcal Electronic energy + Delta-G solvation = -28682.453653 eV Core-core repulsion = 24804.862652 eV Total energy + Delta-G solvation = -3877.591001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20510 -40.30436 -38.29279 -37.49818 -34.98796 -33.46876 -32.37000 -31.42113 -30.81621 -29.63917 -28.95886 -28.72351 -25.87079 -24.68121 -23.37600 -22.93174 -21.89273 -21.22827 -20.37358 -19.98723 -19.93281 -17.86994 -17.71727 -17.38730 -16.53088 -16.03168 -15.98989 -15.02784 -14.99607 -14.73727 -14.50252 -14.25867 -14.11454 -13.84381 -13.77244 -13.55538 -13.40502 -13.12720 -12.84523 -12.81937 -12.73759 -12.56654 -12.27304 -12.20069 -11.98469 -11.84329 -11.79530 -11.23633 -10.96309 -10.74281 -10.64649 -10.43412 -10.18005 -10.12450 -9.99043 -9.58743 -9.39028 -9.09222 -8.90918 -8.90338 -8.69063 -7.24573 -5.76832 -3.12920 0.41774 1.00488 1.60154 2.59943 2.84630 3.31978 3.39760 3.43508 3.48090 3.50192 4.10691 4.23707 4.28204 4.36367 4.49051 4.55159 4.60250 4.67049 4.80297 4.81407 4.93171 4.96027 4.96781 5.05482 5.09561 5.16558 5.17265 5.21182 5.36584 5.42799 5.54146 5.64110 5.69461 5.73886 5.78293 5.79925 5.80353 5.86538 5.87123 5.97259 5.99715 6.09123 6.14787 6.25760 6.26389 6.33525 6.56917 6.68288 6.84963 7.40599 7.98179 8.05614 8.41842 9.20470 9.93046 10.11798 11.41343 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.001990 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.770494 B =14068.025124 C =14703.023613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.127 4.127 14 C 0.089 3.911 15 N -0.612 5.612 16 C 0.568 3.432 17 O -0.536 6.536 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.100 4.100 21 C 0.096 3.904 22 N -0.471 5.471 23 C 0.054 3.946 24 C -0.168 4.168 25 C -0.167 4.167 26 C 0.052 3.948 27 C -0.161 4.161 28 C -0.050 4.050 29 C 0.113 3.887 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.077 0.923 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.151 -8.891 -3.662 35.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.103 0.897 13 C -0.165 4.165 14 C -0.033 4.033 15 N -0.345 5.345 16 C 0.358 3.642 17 O -0.414 6.414 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.118 4.118 21 C 0.001 3.999 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.186 4.186 25 C -0.186 4.186 26 C -0.074 4.074 27 C -0.181 4.181 28 C -0.069 4.069 29 C -0.008 4.008 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.183 0.817 39 H 0.154 0.846 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 33.780 -8.929 -3.738 35.139 hybrid contribution 0.620 2.030 -0.488 2.178 sum 34.400 -6.899 -4.226 35.338 Atomic orbital electron populations 1.69699 1.05095 1.25856 1.57433 1.24661 0.95222 0.97196 1.01887 0.86587 0.79181 0.85022 0.77982 1.20901 1.21673 1.20372 1.19036 0.80549 0.94747 1.43260 0.89142 1.42719 1.04131 1.02158 1.91231 1.20569 0.86586 0.89554 0.99116 1.22653 0.97210 0.96003 0.97127 0.89653 1.22730 0.94160 0.98039 1.01608 1.22576 0.98767 0.86779 0.95205 1.48422 1.10328 1.26420 1.49327 1.17886 0.84824 0.82262 0.79217 1.90811 1.80706 1.28709 1.41149 1.19978 0.93150 0.97190 1.02746 1.22798 0.97450 0.96276 0.96960 1.20972 0.91471 0.99911 0.99495 1.19216 0.90045 0.93489 0.97119 1.63124 1.00046 1.38793 1.17294 1.22235 0.92911 1.02661 0.89362 1.23584 0.96989 0.99235 0.98791 1.23582 0.98327 1.00002 0.96663 1.22261 0.91281 0.93239 1.00616 1.21572 0.96562 0.97984 1.01995 1.21129 0.91503 0.98876 0.95416 1.22391 0.78970 1.01480 0.97983 0.93036 0.80623 0.94861 0.95093 0.89541 0.89818 0.90384 0.90328 0.81652 0.84615 0.89024 0.91627 0.84342 0.84347 0.91521 0.89022 0.85605 0.84592 0.90447 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 7 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.72 5.26 -59.91 -0.31 -18.04 16 10 C 0.17 3.05 5.71 -4.04 -0.02 3.02 16 11 C -0.11 -1.54 3.11 -88.47 -0.27 -1.82 16 12 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.13 -1.23 6.42 -24.89 -0.16 -1.39 16 14 C 0.09 0.82 4.87 -3.07 -0.01 0.80 16 15 N -0.61 -8.18 3.33 -176.26 -0.59 -8.77 16 16 C 0.57 8.50 7.80 -12.47 -0.10 8.40 16 17 O -0.54 -10.10 16.66 5.28 0.09 -10.01 16 18 C -0.13 -1.51 5.87 -104.95 -0.62 -2.12 16 19 C -0.12 -1.06 8.58 -39.23 -0.34 -1.40 16 20 C -0.10 -0.84 9.95 -39.44 -0.39 -1.23 16 21 C 0.10 0.85 4.90 -83.87 -0.41 0.44 16 22 N -0.47 -3.76 5.56 -171.17 -0.95 -4.71 16 23 C 0.05 0.36 6.46 -4.03 -0.03 0.34 16 24 C -0.17 -0.92 10.95 -35.81 -0.39 -1.31 16 25 C -0.17 -0.93 10.95 -35.81 -0.39 -1.32 16 26 C 0.05 0.35 6.43 -4.04 -0.03 0.33 16 27 C -0.16 -1.46 7.65 -39.45 -0.30 -1.77 16 28 C -0.05 -0.55 9.58 -39.23 -0.38 -0.92 16 29 C 0.11 1.75 6.06 -2.53 -0.02 1.74 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.36 8.40 5.39 -40.82 -0.22 8.18 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.08 0.57 6.81 -51.93 -0.35 0.21 16 37 H 0.08 0.60 6.64 -51.93 -0.34 0.25 16 38 H 0.17 1.19 2.75 -58.33 -0.16 1.03 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.45 6.73 -51.93 -0.35 0.10 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.07 0.46 6.28 -51.93 -0.33 0.13 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.13 0.96 7.01 -52.49 -0.37 0.59 16 47 H 0.14 1.55 7.66 -52.49 -0.40 1.14 16 48 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 49 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -34.98 387.24 -11.15 -46.13 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.17 Total: 5.65 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.11 Total: -5.25 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -1.08 Total: -60.23 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.98 -11.15 -46.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713354122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.571 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds