Wall clock time and date at job start Sat Apr 11 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99703 * 2 1 4 4 H 1.48494 * 109.47290 * 269.99950 * 3 2 1 5 5 H 1.48504 * 109.47089 * 29.99416 * 3 2 1 6 6 H 1.48497 * 109.47123 * 149.99420 * 3 2 1 7 7 C 1.38809 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99777 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00065 * 180.28073 * 9 7 2 11 11 C 1.53002 * 109.47319 * 179.72418 * 10 9 7 12 12 H 1.08996 * 110.88390 * 57.42163 * 11 10 9 13 13 C 1.55155 * 111.00159 * 181.35029 * 11 10 9 14 14 C 1.54330 * 102.93877 * 153.57536 * 13 11 10 15 15 N 1.47011 * 107.27104 * 337.80261 * 14 13 11 16 16 C 1.34782 * 125.64939 * 178.98039 * 15 14 13 17 17 O 1.21592 * 120.00051 * 174.75642 * 16 15 14 18 18 C 1.47520 * 119.99748 * 354.74856 * 16 15 14 19 19 C 1.39799 * 120.06809 * 7.71978 * 18 16 15 20 20 C 1.37616 * 119.92757 * 179.71895 * 19 18 16 21 21 C 1.39221 * 120.07005 * 0.54403 * 20 19 18 22 22 N 1.39033 * 119.93044 * 179.74297 * 21 20 19 23 23 C 1.48234 * 110.99660 * 119.87981 * 22 21 20 24 24 C 1.51121 * 105.35953 * 144.90176 * 23 22 21 25 25 C 1.30964 * 109.45477 * 343.02342 * 24 23 22 26 26 C 1.48226 * 111.00136 * 233.51830 * 22 21 20 27 27 C 1.39218 * 120.13524 * 359.72992 * 21 20 19 28 28 C 1.37609 * 120.07276 * 359.97438 * 27 21 20 29 29 C 1.47430 * 108.70593 * 358.94185 * 15 14 13 30 30 H 0.97007 * 120.00371 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99516 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47109 * 299.72422 * 10 9 7 33 33 H 1.09004 * 109.47318 * 59.71750 * 10 9 7 34 34 H 1.08998 * 110.71662 * 271.93154 * 13 11 10 35 35 H 1.08998 * 110.72701 * 35.21161 * 13 11 10 36 36 H 1.09005 * 109.88090 * 218.38414 * 14 13 11 37 37 H 1.09003 * 110.00885 * 97.29656 * 14 13 11 38 38 H 1.07993 * 120.03328 * 359.96791 * 19 18 16 39 39 H 1.07995 * 119.96251 * 180.25100 * 20 19 18 40 40 H 1.08999 * 110.26896 * 263.87190 * 23 22 21 41 41 H 1.08995 * 110.26751 * 25.93318 * 23 22 21 42 42 H 1.08002 * 125.27474 * 163.04953 * 24 23 22 43 43 H 1.08002 * 125.27144 * 180.02562 * 25 24 23 44 44 H 1.08994 * 110.26893 * 334.07049 * 26 22 21 45 45 H 1.08997 * 110.26915 * 96.04158 * 26 22 21 46 46 H 1.07998 * 119.96493 * 179.97438 * 27 21 20 47 47 H 1.08000 * 120.03895 * 180.02562 * 28 27 21 48 48 H 1.09000 * 110.36267 * 265.28905 * 29 15 14 49 49 H 1.09000 * 110.36855 * 142.97029 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4706 -0.0046 11 6 5.6165 -2.1910 -0.0096 12 1 5.9015 -1.5828 0.8488 13 6 6.4277 -3.5130 -0.0498 14 6 7.7511 -3.0861 -0.7193 15 7 7.4791 -1.8578 -1.4799 16 6 8.3846 -1.1580 -2.1919 17 8 8.0286 -0.2074 -2.8613 18 6 9.8077 -1.5454 -2.1590 19 6 10.1971 -2.7282 -1.5237 20 6 11.5247 -3.0897 -1.4997 21 6 12.4809 -2.2732 -2.0975 22 7 13.8220 -2.6386 -2.0669 23 6 14.3595 -2.8016 -3.4387 24 6 15.7910 -2.3226 -3.3673 25 6 15.9597 -1.6126 -2.2798 26 6 14.6579 -1.5458 -1.5152 27 6 12.0969 -1.0918 -2.7259 28 6 10.7702 -0.7278 -2.7586 29 6 6.0516 -1.5186 -1.3356 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3619 0.0007 32 1 3.8523 -3.0442 0.8851 33 1 3.8455 -3.0403 -0.8948 34 1 6.6082 -3.8854 0.9585 35 1 5.9146 -4.2622 -0.6528 36 1 8.0957 -3.8707 -1.3930 37 1 8.5078 -2.8916 0.0408 38 1 9.4564 -3.3596 -1.0557 39 1 11.8257 -4.0054 -1.0126 40 1 14.3265 -3.8501 -3.7350 41 1 13.7920 -2.1918 -4.1415 42 1 16.5563 -2.5328 -4.0998 43 1 16.8856 -1.1466 -1.9766 44 1 14.1744 -0.5824 -1.6765 45 1 14.8345 -1.7057 -0.4516 46 1 12.8410 -0.4603 -3.1884 47 1 10.4729 0.1886 -3.2466 48 1 5.4796 -1.9219 -2.1712 49 1 5.9229 -0.4380 -1.2731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713354122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:25 Heat of formation + Delta-G solvation = 57.068218 kcal Electronic energy + Delta-G solvation = -28683.467239 eV Core-core repulsion = 24804.862652 eV Total energy + Delta-G solvation = -3878.604586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95839 -41.15281 -39.19768 -38.49236 -36.67343 -34.40362 -33.76339 -32.53584 -32.10614 -30.49156 -29.77921 -29.43014 -27.27765 -25.70797 -24.43132 -23.71918 -23.37324 -21.93855 -21.57162 -21.00317 -20.34762 -19.67170 -18.52991 -18.31945 -17.56469 -17.02761 -16.70625 -16.61180 -16.01580 -15.72875 -15.63780 -15.50399 -14.94615 -14.81655 -14.75679 -14.63462 -14.34139 -14.22512 -13.93695 -13.88787 -13.73042 -13.54166 -13.28567 -13.20365 -12.96305 -12.93111 -12.82497 -12.38353 -12.26951 -12.23302 -11.90083 -11.83183 -11.63619 -11.48880 -11.13318 -11.00275 -10.67376 -10.11810 -9.93153 -9.66744 -9.42470 -9.30657 -8.05252 -5.37444 -0.37835 0.28940 1.20756 1.33550 1.37091 1.42329 1.63989 1.81804 2.44409 2.67236 2.76081 3.24681 3.27822 3.52860 3.54390 3.65090 3.79044 3.82800 3.85742 3.88192 4.00769 4.17238 4.22650 4.28750 4.35584 4.42826 4.44097 4.49974 4.51089 4.53559 4.62403 4.67056 4.73943 4.82468 4.92068 4.94944 4.98108 5.03553 5.07992 5.14374 5.21929 5.28357 5.31808 5.36336 5.40641 5.41977 5.59774 5.74929 5.86043 6.19281 6.21123 6.38193 6.96045 7.06041 7.83384 7.99373 9.16176 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.001990 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.770494 B =14068.025124 C =14703.023613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.230 4.230 8 H 0.064 0.936 9 N -0.762 5.762 10 C 0.165 3.835 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.114 4.114 14 C 0.082 3.918 15 N -0.610 5.610 16 C 0.561 3.439 17 O -0.592 6.592 18 C -0.147 4.147 19 C -0.103 4.103 20 C -0.098 4.098 21 C 0.100 3.900 22 N -0.478 5.478 23 C 0.048 3.952 24 C -0.170 4.170 25 C -0.170 4.170 26 C 0.046 3.954 27 C -0.158 4.158 28 C -0.063 4.063 29 C 0.112 3.888 30 H 0.257 0.743 31 H 0.362 0.638 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.190 0.810 39 H 0.160 0.840 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.120 0.880 48 H 0.063 0.937 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.027 -10.837 -2.576 39.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.408 5.408 10 C 0.039 3.961 11 C -0.120 4.120 12 H 0.105 0.895 13 C -0.152 4.152 14 C -0.039 4.039 15 N -0.342 5.342 16 C 0.353 3.647 17 O -0.474 6.474 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.005 3.995 22 N -0.200 5.200 23 C -0.077 4.077 24 C -0.188 4.188 25 C -0.189 4.189 26 C -0.080 4.080 27 C -0.178 4.178 28 C -0.083 4.083 29 C -0.011 4.011 30 H 0.066 0.934 31 H 0.195 0.805 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.206 0.794 39 H 0.177 0.823 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.154 0.846 47 H 0.138 0.862 48 H 0.081 0.919 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 37.720 -10.942 -2.623 39.362 hybrid contribution -0.529 2.500 -0.851 2.693 sum 37.190 -8.443 -3.474 38.295 Atomic orbital electron populations 1.69859 1.06880 1.26532 1.59904 1.25405 0.96022 1.00805 1.02969 0.85552 0.78745 0.80555 0.77805 1.21263 1.21876 1.17971 1.19076 0.82718 0.93565 1.40781 0.91827 1.42811 1.02603 1.04374 1.90982 1.20783 0.88843 0.87262 0.99227 1.22488 0.94750 0.98743 0.96033 0.89462 1.22769 0.93203 0.95483 1.03762 1.22961 0.99319 0.85571 0.96012 1.48476 1.09061 1.27502 1.49112 1.18464 0.86202 0.81601 0.78473 1.90770 1.81735 1.31236 1.43679 1.19828 0.91152 0.98978 1.05091 1.22968 0.98275 0.95025 0.95794 1.21251 0.90934 1.00472 0.98966 1.19431 0.90836 0.93054 0.96158 1.63199 0.99614 1.39119 1.18027 1.22312 0.93740 1.02976 0.88655 1.23756 0.96653 0.99119 0.99299 1.23750 0.98439 1.00178 0.96490 1.22339 0.91828 0.92753 1.01034 1.21628 0.95786 0.98457 1.01951 1.21109 0.92439 0.98712 0.96047 1.22222 0.80645 0.99703 0.98522 0.93362 0.80491 0.93939 0.95128 0.86428 0.88987 0.87497 0.87693 0.79416 0.82262 0.88584 0.92066 0.82467 0.82503 0.91877 0.88703 0.84586 0.86176 0.91862 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.95 47.43 27.74 68.60 1.90 49.33 16 4 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.25 -11.68 6.52 99.48 0.65 -11.03 16 7 C -0.23 -13.21 10.47 84.03 0.88 -12.33 16 8 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 9 N -0.76 -35.50 5.26 -343.46 -1.81 -37.30 16 10 C 0.16 5.74 5.71 86.38 0.49 6.23 16 11 C -0.10 -2.61 3.11 -9.40 -0.03 -2.64 16 12 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.11 -1.73 6.42 31.78 0.20 -1.53 16 14 C 0.08 1.17 4.87 86.73 0.42 1.59 16 15 N -0.61 -15.57 3.33 -829.82 -2.76 -18.33 16 16 C 0.56 16.88 7.80 86.69 0.68 17.55 16 17 O -0.59 -23.54 16.66 -4.01 -0.07 -23.60 16 18 C -0.15 -3.35 5.87 -20.08 -0.12 -3.47 16 19 C -0.10 -1.55 8.58 22.50 0.19 -1.35 16 20 C -0.10 -1.32 9.95 22.36 0.22 -1.09 16 21 C 0.10 1.54 4.90 38.47 0.19 1.73 16 22 N -0.48 -6.47 5.56 -695.45 -3.87 -10.34 16 23 C 0.05 0.55 6.46 85.43 0.55 1.10 16 24 C -0.17 -1.46 10.95 25.82 0.28 -1.17 16 25 C -0.17 -1.47 10.95 25.82 0.28 -1.19 16 26 C 0.05 0.53 6.43 85.43 0.55 1.08 16 27 C -0.16 -2.72 7.65 22.36 0.17 -2.55 16 28 C -0.06 -1.41 9.58 22.50 0.22 -1.19 16 29 C 0.11 3.44 6.06 86.85 0.53 3.97 16 30 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 31 H 0.36 16.65 5.39 -92.71 -0.50 16.15 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.11 1.01 6.81 -2.38 -0.02 0.99 16 37 H 0.11 1.04 6.64 -2.39 -0.02 1.03 16 38 H 0.19 1.81 2.75 -8.40 -0.02 1.79 16 39 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.75 6.73 -2.39 -0.02 0.73 16 42 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.06 0.77 6.28 -2.39 -0.02 0.75 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.14 1.97 7.01 -2.91 -0.02 1.95 16 47 H 0.12 2.96 7.66 -2.91 -0.02 2.94 16 48 H 0.06 2.09 8.00 -2.39 -0.02 2.07 16 49 H 0.05 1.75 8.09 -2.39 -0.02 1.73 16 Total: -1.00 -79.88 387.24 0.28 -79.60 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.39 Total: 22.49 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.18 Total: 1.59 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -8.13 Total: -129.40 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.07 Total: -23.60 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.90 Total: 49.33 kcal Total: -79.88 0.28 -79.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713354122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.667 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds