Wall clock time and date at job start Sat Apr 11 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46912 * 300.00460 * 3 2 1 6 6 H 1.48496 * 109.46760 * 60.00460 * 3 2 1 7 7 C 1.38811 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00058 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47144 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.49578 * 304.93976 * 12 11 10 14 14 C 1.53035 * 109.49880 * 184.84294 * 12 11 10 15 15 C 1.53041 * 109.54132 * 178.68321 * 14 12 11 16 16 C 1.52766 * 109.38219 * 61.23618 * 15 14 12 17 17 N 1.46931 * 109.00716 * 305.59203 * 16 15 14 18 18 C 1.34782 * 120.62665 * 233.58399 * 17 16 15 19 19 O 1.21594 * 119.99745 * 183.42094 * 18 17 16 20 20 C 1.47500 * 119.99970 * 3.42479 * 18 17 16 21 21 C 1.41193 * 126.36972 * 317.09843 * 20 18 17 22 22 C 1.37997 * 106.86476 * 180.02562 * 21 20 18 23 23 C 1.41381 * 131.98574 * 179.72031 * 22 21 20 24 24 C 1.35745 * 119.32941 * 179.97438 * 23 22 21 25 25 C 1.40823 * 119.72213 * 0.35811 * 24 23 22 26 26 C 1.34536 * 120.58069 * 359.82432 * 25 24 23 27 27 N 1.37434 * 120.74603 * 0.02562 * 26 25 24 28 28 C 1.35125 * 131.28618 * 179.97438 * 27 26 25 29 29 C 1.46923 * 118.74121 * 53.30724 * 17 16 15 30 30 H 0.97006 * 119.99839 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00248 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47098 * 59.99490 * 10 9 7 33 33 H 1.08997 * 109.47141 * 299.99749 * 10 9 7 34 34 H 1.09005 * 109.46932 * 60.00310 * 11 10 9 35 35 H 1.08997 * 109.47342 * 300.00136 * 11 10 9 36 36 H 1.09010 * 109.45717 * 298.70422 * 14 12 11 37 37 H 1.09000 * 109.46510 * 58.65916 * 14 12 11 38 38 H 1.08990 * 109.49893 * 181.30971 * 15 14 12 39 39 H 1.09000 * 109.49251 * 301.38028 * 15 14 12 40 40 H 1.08994 * 109.50846 * 185.71254 * 16 15 14 41 41 H 1.08995 * 109.43318 * 65.42312 * 16 15 14 42 42 H 1.08002 * 126.57057 * 0.05083 * 21 20 18 43 43 H 1.08001 * 120.33805 * 0.28946 * 23 22 21 44 44 H 1.08000 * 120.13774 * 180.15937 * 24 23 22 45 45 H 1.07998 * 119.70804 * 179.80565 * 25 24 23 46 46 H 1.08004 * 119.62609 * 179.97438 * 26 25 24 47 47 H 1.08004 * 125.61778 * 0.05728 * 28 27 26 48 48 H 1.09003 * 109.58614 * 66.43096 * 29 17 16 49 49 H 1.08999 * 109.59079 * 186.85453 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 0.0001 12 6 1.8286 -6.1448 -0.0005 13 1 2.5195 -6.1656 -0.8434 14 6 0.8390 -7.3059 -0.1217 15 6 1.6053 -8.6302 -0.1555 16 6 2.3888 -8.7959 1.1455 17 7 3.2363 -7.6127 1.3477 18 6 4.5607 -7.7450 1.5602 19 8 5.2409 -6.7632 1.7879 20 6 5.1848 -9.0807 1.5164 21 6 4.6675 -10.2656 2.0838 22 6 5.5715 -11.2705 1.8057 23 6 5.5824 -12.6478 2.1249 24 6 6.6221 -13.4175 1.7133 25 6 7.6758 -12.8349 0.9830 26 6 7.6597 -11.5228 0.6866 27 7 6.6164 -10.7241 1.0899 28 6 6.3842 -9.4046 0.9143 29 6 2.6137 -6.2825 1.3076 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.6846 -3.7145 0.8894 33 1 2.6845 -3.7146 -0.8905 34 1 0.4366 -4.7622 -0.8897 35 1 0.4373 -4.7618 0.8903 36 1 0.1641 -7.2985 0.7343 37 1 0.2618 -7.1968 -1.0398 38 1 0.9014 -9.4551 -0.2651 39 1 2.2978 -8.6283 -0.9972 40 1 3.0138 -9.6866 1.0830 41 1 1.6925 -8.8931 1.9783 42 1 3.7414 -10.3664 2.6303 43 1 4.7694 -13.0841 2.6862 44 1 6.6425 -14.4715 1.9477 45 1 8.5044 -13.4469 0.6584 46 1 8.4762 -11.0920 0.1260 47 1 7.0300 -8.7167 0.3888 48 1 1.9360 -6.1707 2.1540 49 1 3.3870 -5.5156 1.3522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714230156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:34 Heat of formation + Delta-G solvation = 27.525010 kcal Electronic energy + Delta-G solvation = -28840.995631 eV Core-core repulsion = 24961.109955 eV Total energy + Delta-G solvation = -3879.885676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23294 -41.12213 -38.89110 -37.34404 -36.95865 -35.06486 -34.00372 -33.35793 -32.34565 -31.09065 -29.09091 -28.66217 -26.97158 -25.90851 -24.65022 -24.05020 -23.26107 -22.73350 -22.10834 -21.14512 -19.92996 -19.15769 -18.54968 -17.85829 -17.55477 -16.96860 -16.74105 -16.43743 -16.20256 -15.99386 -15.71451 -15.50675 -15.32004 -15.25729 -15.08284 -14.82549 -14.54323 -14.27202 -13.99505 -13.86961 -13.50896 -13.31255 -12.98859 -12.88658 -12.79259 -12.59151 -12.42978 -12.33883 -12.17996 -12.10513 -11.94561 -11.89411 -11.74880 -11.57827 -11.36996 -11.19635 -10.95615 -10.92025 -9.74915 -9.48234 -9.03418 -8.33533 -7.98732 -5.27897 -0.12804 0.39239 1.14365 1.44109 1.45514 1.56206 1.59500 1.99716 2.26697 2.53212 2.60360 3.34077 3.50841 3.64094 3.67266 3.85099 3.89463 3.91613 4.04347 4.10590 4.13127 4.17986 4.30879 4.32788 4.36440 4.45223 4.51645 4.59131 4.60998 4.69716 4.72826 4.84687 4.88647 4.91987 4.92758 4.93909 5.06635 5.13690 5.23556 5.26214 5.32104 5.33242 5.38126 5.43507 5.45491 5.51229 5.54805 5.68790 5.91620 6.24446 6.26658 6.40935 7.12693 7.30170 8.05210 8.30779 9.24868 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002005 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.127671 B =13964.952903 C =14917.548554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.746 5.746 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.083 4.083 13 H 0.061 0.939 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.090 3.910 17 N -0.598 5.598 18 C 0.579 3.421 19 O -0.593 6.593 20 C -0.180 4.180 21 C -0.178 4.178 22 C 0.026 3.974 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.019 3.981 27 N -0.342 5.342 28 C -0.011 4.011 29 C 0.117 3.883 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.013 0.987 33 H 0.009 0.991 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.178 0.822 46 H 0.182 0.818 47 H 0.179 0.821 48 H 0.076 0.924 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.630 -38.015 1.929 39.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.103 4.103 13 H 0.079 0.921 14 C -0.148 4.148 15 C -0.165 4.165 16 C -0.031 4.031 17 N -0.328 5.328 18 C 0.369 3.631 19 O -0.475 6.475 20 C -0.188 4.188 21 C -0.202 4.202 22 C -0.079 4.079 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.098 4.098 27 N -0.005 5.005 28 C -0.145 4.145 29 C -0.006 4.006 30 H 0.062 0.938 31 H 0.208 0.792 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.182 0.818 45 H 0.195 0.805 46 H 0.199 0.801 47 H 0.196 0.804 48 H 0.094 0.906 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.362 -37.485 1.933 39.217 hybrid contribution 0.151 1.854 -0.073 1.862 sum 11.513 -35.630 1.859 37.490 Atomic orbital electron populations 1.69815 1.06470 1.26137 1.59316 1.25592 0.96549 1.01104 1.03460 0.85049 0.77991 0.79582 0.76995 1.19533 1.21476 1.21587 1.19657 0.91343 0.85657 1.41584 0.91340 1.42573 1.05678 1.01198 1.89391 1.20852 0.94415 0.85520 0.96910 1.21588 0.97573 0.92428 1.02575 1.21325 0.97344 0.94909 0.96754 0.92071 1.21580 0.97054 0.92902 1.03303 1.21824 0.99424 0.98229 0.97032 1.22339 0.94302 0.87752 0.98740 1.48045 1.06801 1.08356 1.69642 1.18005 0.81747 0.87857 0.75478 1.90774 1.63538 1.41590 1.51574 1.19346 0.97765 0.93207 1.08449 1.21317 1.01784 0.89088 1.07979 1.19232 0.90633 0.95326 1.02743 1.21008 1.00989 0.88830 1.00390 1.21439 0.93251 1.01917 0.97882 1.21252 1.01170 0.93015 0.99424 1.22296 0.91989 0.92336 1.03182 1.41448 1.16116 1.07419 1.35533 1.21929 0.99442 0.83817 1.09275 1.21655 0.96813 0.83914 0.98177 0.93814 0.79219 0.96894 0.97284 0.91268 0.91424 0.90575 0.90763 0.87677 0.92574 0.86970 0.89474 0.81105 0.81635 0.81847 0.80454 0.80057 0.80374 0.90614 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.30 13.06 21.65 0.28 -61.01 16 2 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 48.59 29.55 68.60 2.03 50.61 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 7 C -0.25 -15.14 9.99 84.03 0.84 -14.30 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -41.10 5.60 -343.44 -1.92 -43.03 16 10 C 0.15 6.67 6.02 86.38 0.52 7.19 16 11 C -0.10 -3.47 4.80 30.60 0.15 -3.32 16 12 C -0.08 -2.28 2.34 -10.72 -0.03 -2.31 16 13 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -2.16 5.17 30.62 0.16 -2.00 16 15 C -0.13 -1.97 6.07 30.53 0.19 -1.79 16 16 C 0.09 1.51 5.68 86.22 0.49 2.00 16 17 N -0.60 -15.65 2.98 -823.53 -2.45 -18.11 16 18 C 0.58 18.05 7.59 86.68 0.66 18.71 16 19 O -0.59 -24.23 16.52 -4.01 -0.07 -24.30 16 20 C -0.18 -4.42 5.33 -20.15 -0.11 -4.53 16 21 C -0.18 -3.27 8.50 22.94 0.20 -3.07 16 22 C 0.03 0.43 6.70 38.90 0.26 0.69 16 23 C -0.09 -0.92 10.11 22.47 0.23 -0.69 16 24 C -0.12 -0.80 10.07 22.32 0.22 -0.58 16 25 C -0.13 -0.81 9.97 22.05 0.22 -0.59 16 26 C 0.02 0.20 10.89 82.97 0.90 1.11 16 27 N -0.34 -5.89 2.92 -345.08 -1.01 -6.89 16 28 C -0.01 -0.25 11.56 84.14 0.97 0.73 16 29 C 0.12 3.50 5.32 86.36 0.46 3.96 16 30 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.38 21.42 7.67 -92.71 -0.71 20.71 16 32 H 0.01 0.61 6.70 -2.39 -0.02 0.59 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.67 4.16 -2.39 -0.01 1.66 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.17 2.31 7.13 -2.91 -0.02 2.29 16 43 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.16 0.08 8.06 -2.91 -0.02 0.05 16 45 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 46 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.33 5.74 -2.39 -0.01 2.32 16 Total: -1.00 -82.44 392.79 3.90 -78.54 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.24 Total: 27.04 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.79 Total: -2.86 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.10 Total: -129.04 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.07 Total: -24.30 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.61 kcal Total: -82.44 3.90 -78.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714230156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.066 kcal (2) G-P(sol) polarization free energy of solvation -82.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds