Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47145 * 270.00029 * 3 2 1 5 5 H 1.48501 * 109.47191 * 30.00321 * 3 2 1 6 6 H 1.48507 * 109.47084 * 150.00319 * 3 2 1 7 7 C 1.38817 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00137 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99779 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47028 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00238 * 89.99644 * 12 11 10 14 14 C 1.38241 * 120.00128 * 179.97438 * 13 12 11 15 15 C 1.38234 * 119.99758 * 0.02775 * 14 13 12 16 16 C 1.50701 * 119.99729 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47490 * 89.99674 * 16 15 14 18 18 C 1.34772 * 119.99731 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00727 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99738 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47449 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47444 * 180.02562 * 21 20 18 23 23 C 1.36345 * 125.63345 * 90.00307 * 22 21 20 24 24 C 1.34850 * 108.21864 * 179.97438 * 23 22 21 25 25 C 1.40894 * 107.41649 * 0.02562 * 24 23 22 26 26 C 1.34846 * 107.41755 * 359.97438 * 25 24 23 27 27 C 1.38230 * 120.00339 * 0.24605 * 15 14 13 28 28 C 1.38239 * 119.99848 * 270.01899 * 12 11 10 29 29 H 0.96999 * 120.00151 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99789 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47126 * 59.99672 * 10 9 7 32 32 H 1.09005 * 109.47020 * 299.99500 * 10 9 7 33 33 H 1.08993 * 109.47599 * 59.99864 * 11 10 9 34 34 H 1.09005 * 109.46817 * 299.99527 * 11 10 9 35 35 H 1.07999 * 120.00326 * 359.97438 * 13 12 11 36 36 H 1.08000 * 119.99995 * 179.97438 * 14 13 12 37 37 H 1.08998 * 109.47235 * 329.98929 * 16 15 14 38 38 H 1.09005 * 109.47092 * 209.99989 * 16 15 14 39 39 H 0.96996 * 119.99648 * 359.97438 * 17 16 15 40 40 H 1.09009 * 109.46880 * 59.99997 * 20 18 17 41 41 H 1.08993 * 109.47272 * 300.00141 * 20 18 17 42 42 H 1.09006 * 109.46659 * 59.99780 * 21 20 18 43 43 H 1.09005 * 109.47449 * 300.00857 * 21 20 18 44 44 H 1.08006 * 125.89009 * 359.71336 * 23 22 21 45 45 H 1.08004 * 126.29266 * 180.02562 * 24 23 22 46 46 H 1.07995 * 126.28821 * 179.97438 * 25 24 23 47 47 H 1.08002 * 125.89342 * 180.02562 * 26 25 24 48 48 H 1.07998 * 120.00471 * 179.73433 * 27 15 14 49 49 H 1.07997 * 119.99666 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 6 6.3697 -3.4965 -0.0017 13 6 6.7152 -4.0947 -1.1991 14 6 7.4068 -5.2916 -1.1997 15 6 7.7524 -5.8906 -0.0028 16 6 8.5059 -7.1958 -0.0034 17 7 9.9463 -6.9282 -0.0035 18 6 10.8219 -7.9527 -0.0045 19 8 10.4176 -9.0961 -0.0049 20 6 12.3036 -7.6775 -0.0052 21 6 13.0686 -9.0025 -0.0057 22 7 14.5089 -8.7349 -0.0058 23 6 15.2900 -8.5902 1.1024 24 6 16.5551 -8.3557 0.6987 25 6 16.5549 -8.3549 -0.7102 26 6 15.2899 -8.5896 -1.1138 27 6 7.4021 -5.2954 1.1946 28 6 6.7150 -4.0958 1.1952 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.8483 -3.0427 -0.8907 32 1 3.8491 -3.0423 0.8892 33 1 5.8797 -1.6199 0.8888 34 1 5.8796 -1.6199 -0.8912 35 1 6.4447 -3.6269 -2.1342 36 1 7.6763 -5.7591 -2.1352 37 1 8.2424 -7.7670 -0.8934 38 1 8.2426 -7.7677 0.8864 39 1 10.2696 -6.0137 -0.0036 40 1 12.5675 -7.1063 0.8850 41 1 12.5665 -7.1054 -0.8950 42 1 12.8047 -9.5739 -0.8957 43 1 12.8056 -9.5743 0.8843 44 1 14.9528 -8.6488 2.1267 45 1 17.4111 -8.1974 1.3380 46 1 17.4107 -8.1956 -1.3494 47 1 14.9533 -8.6519 -2.1382 48 1 7.6684 -5.7656 2.1297 49 1 6.4445 -3.6289 2.1307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714425482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = 43.540659 kcal Electronic energy + Delta-G solvation = -26766.336283 eV Core-core repulsion = 22887.145097 eV Total energy + Delta-G solvation = -3879.191185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54248 -40.34120 -39.46792 -36.09477 -35.00321 -34.51085 -32.91855 -31.29925 -31.07143 -30.29980 -29.14762 -28.75186 -26.12372 -24.43131 -23.22743 -22.86918 -21.50587 -21.00215 -20.84254 -20.65473 -20.29087 -18.27064 -17.66056 -17.31863 -16.55659 -16.43601 -15.81644 -15.72333 -15.20225 -14.86734 -14.61291 -14.52741 -14.09733 -14.05518 -13.94704 -13.71237 -13.43689 -13.39701 -12.97485 -12.85569 -12.83298 -12.61168 -12.59983 -12.45877 -12.40802 -11.85008 -11.57882 -11.39227 -11.36019 -11.02053 -10.73251 -10.72990 -10.50324 -10.19270 -9.62979 -9.57885 -9.05681 -9.02596 -8.92357 -8.70336 -8.54133 -7.27484 -5.79693 -3.15916 1.04767 1.28078 1.86473 2.08942 2.37155 2.70358 2.92479 3.34247 3.36767 3.42438 3.66260 4.07499 4.14370 4.27360 4.41594 4.56012 4.62324 4.67606 4.75468 4.81281 4.82185 4.85184 4.87108 4.99674 5.16842 5.27863 5.29459 5.30763 5.36177 5.40668 5.50933 5.60081 5.62525 5.71309 5.88024 5.88990 5.92738 5.94813 5.94972 6.07177 6.28568 6.36493 6.47174 6.61857 6.66426 6.77012 6.85257 6.85922 6.96135 6.98133 7.66532 7.96291 8.39022 9.17828 9.89937 10.09519 11.38687 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.001347 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.315911 B =20777.973847 C =21295.644208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.098 4.098 12 C -0.052 4.052 13 C -0.117 4.117 14 C -0.098 4.098 15 C -0.128 4.128 16 C 0.164 3.836 17 N -0.722 5.722 18 C 0.517 3.483 19 O -0.542 6.542 20 C -0.158 4.158 21 C 0.122 3.878 22 N -0.449 5.449 23 C -0.017 4.017 24 C -0.202 4.202 25 C -0.202 4.202 26 C -0.017 4.017 27 C -0.098 4.098 28 C -0.117 4.117 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.404 0.596 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.160 0.840 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.160 0.840 48 H 0.121 0.879 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.275 -17.084 -0.016 36.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.136 4.136 12 C -0.053 4.053 13 C -0.135 4.135 14 C -0.117 4.117 15 C -0.128 4.128 16 C 0.042 3.958 17 N -0.374 5.374 18 C 0.303 3.697 19 O -0.419 6.419 20 C -0.199 4.199 21 C -0.001 4.001 22 N -0.125 5.125 23 C -0.146 4.146 24 C -0.227 4.227 25 C -0.227 4.227 26 C -0.146 4.146 27 C -0.116 4.116 28 C -0.135 4.135 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.177 0.823 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.177 0.823 48 H 0.139 0.861 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 31.350 -18.084 -0.013 36.192 hybrid contribution 0.558 1.799 0.009 1.884 sum 31.908 -16.285 -0.004 35.824 Atomic orbital electron populations 1.69703 1.05116 1.25864 1.57474 1.24680 0.95248 0.97228 1.01955 0.86530 0.79182 0.84909 0.77787 1.21041 1.21660 1.20357 1.19066 0.80573 0.94805 1.43172 0.89218 1.42717 1.04122 1.02173 1.91301 1.20566 0.87420 0.89332 0.98923 1.20918 0.96220 0.93399 1.03064 1.20028 0.95780 0.96494 0.93023 1.21127 0.98645 0.95668 0.98090 1.21017 0.98045 0.95378 0.97213 1.19696 1.02401 0.96882 0.93822 1.20189 0.78371 0.94090 1.03163 1.46140 1.06523 1.09622 1.75123 1.20374 0.88104 0.85192 0.76064 1.90750 1.80361 1.21189 1.49595 1.22026 0.92050 0.99947 1.05844 1.21533 0.76509 0.96052 1.05967 1.44186 1.07297 1.54816 1.06233 1.21875 0.91298 1.09869 0.91584 1.20929 0.96419 1.10096 0.95256 1.20927 0.96414 1.10104 0.95257 1.21873 0.91312 1.09853 0.91585 1.21016 0.98055 0.95362 0.97209 1.21130 0.98685 0.95622 0.98100 0.93019 0.80668 0.95363 0.95428 0.90812 0.90811 0.85632 0.86113 0.90537 0.90536 0.76155 0.88022 0.88014 0.88370 0.88375 0.82281 0.84827 0.84828 0.82282 0.86114 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.90 27.73 -169.99 -4.71 17.18 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.76 -17.94 5.41 -59.91 -0.32 -18.27 16 10 C 0.16 3.13 6.24 -4.04 -0.03 3.11 16 11 C -0.10 -1.42 5.46 -27.88 -0.15 -1.57 16 12 C -0.05 -0.65 5.13 -104.63 -0.54 -1.18 16 13 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 14 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 15 C -0.13 -1.13 5.25 -104.63 -0.55 -1.67 16 16 C 0.16 1.29 5.80 -5.19 -0.03 1.26 16 17 N -0.72 -4.58 5.55 -61.47 -0.34 -4.92 16 18 C 0.52 3.72 7.83 -10.98 -0.09 3.63 16 19 O -0.54 -5.92 15.98 5.56 0.09 -5.83 16 20 C -0.16 -0.71 6.02 -27.88 -0.17 -0.88 16 21 C 0.12 0.66 5.38 -4.05 -0.02 0.64 16 22 N -0.45 -2.97 2.75 -117.13 -0.32 -3.29 16 23 C -0.02 -0.12 11.43 -16.75 -0.19 -0.31 16 24 C -0.20 -1.52 10.86 -39.78 -0.43 -1.96 16 25 C -0.20 -1.52 10.86 -39.78 -0.43 -1.96 16 26 C -0.02 -0.12 11.43 -16.75 -0.19 -0.31 16 27 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 28 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.36 8.22 5.53 -40.82 -0.23 8.00 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.40 1.87 8.46 -40.82 -0.35 1.53 16 40 H 0.10 0.37 8.14 -51.92 -0.42 -0.06 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.16 0.75 8.06 -52.48 -0.42 0.32 16 45 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 49 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 414.54 15.07 6.25 6.25 Total: -1.00 -34.72 414.54 -10.95 -45.68 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.76 Total: 6.09 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.61 Total: -14.32 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.21 Total: -55.05 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.09 Total: -5.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.72 -10.95 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714425482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.218 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds