Wall clock time and date at job start Sat Apr 11 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47145 * 270.00029 * 3 2 1 5 5 H 1.48501 * 109.47191 * 30.00321 * 3 2 1 6 6 H 1.48507 * 109.47084 * 150.00319 * 3 2 1 7 7 C 1.38817 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00137 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99779 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47028 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00238 * 89.99644 * 12 11 10 14 14 C 1.38241 * 120.00128 * 179.97438 * 13 12 11 15 15 C 1.38234 * 119.99758 * 0.02775 * 14 13 12 16 16 C 1.50701 * 119.99729 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47490 * 89.99674 * 16 15 14 18 18 C 1.34772 * 119.99731 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00727 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99738 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47449 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47444 * 180.02562 * 21 20 18 23 23 C 1.36345 * 125.63345 * 90.00307 * 22 21 20 24 24 C 1.34850 * 108.21864 * 179.97438 * 23 22 21 25 25 C 1.40894 * 107.41649 * 0.02562 * 24 23 22 26 26 C 1.34846 * 107.41755 * 359.97438 * 25 24 23 27 27 C 1.38230 * 120.00339 * 0.24605 * 15 14 13 28 28 C 1.38239 * 119.99848 * 270.01899 * 12 11 10 29 29 H 0.96999 * 120.00151 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99789 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47126 * 59.99672 * 10 9 7 32 32 H 1.09005 * 109.47020 * 299.99500 * 10 9 7 33 33 H 1.08993 * 109.47599 * 59.99864 * 11 10 9 34 34 H 1.09005 * 109.46817 * 299.99527 * 11 10 9 35 35 H 1.07999 * 120.00326 * 359.97438 * 13 12 11 36 36 H 1.08000 * 119.99995 * 179.97438 * 14 13 12 37 37 H 1.08998 * 109.47235 * 329.98929 * 16 15 14 38 38 H 1.09005 * 109.47092 * 209.99989 * 16 15 14 39 39 H 0.96996 * 119.99648 * 359.97438 * 17 16 15 40 40 H 1.09009 * 109.46880 * 59.99997 * 20 18 17 41 41 H 1.08993 * 109.47272 * 300.00141 * 20 18 17 42 42 H 1.09006 * 109.46659 * 59.99780 * 21 20 18 43 43 H 1.09005 * 109.47449 * 300.00857 * 21 20 18 44 44 H 1.08006 * 125.89009 * 359.71336 * 23 22 21 45 45 H 1.08004 * 126.29266 * 180.02562 * 24 23 22 46 46 H 1.07995 * 126.28821 * 179.97438 * 25 24 23 47 47 H 1.08002 * 125.89342 * 180.02562 * 26 25 24 48 48 H 1.07998 * 120.00471 * 179.73433 * 27 15 14 49 49 H 1.07997 * 119.99666 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 6 6.3697 -3.4965 -0.0017 13 6 6.7152 -4.0947 -1.1991 14 6 7.4068 -5.2916 -1.1997 15 6 7.7524 -5.8906 -0.0028 16 6 8.5059 -7.1958 -0.0034 17 7 9.9463 -6.9282 -0.0035 18 6 10.8219 -7.9527 -0.0045 19 8 10.4176 -9.0961 -0.0049 20 6 12.3036 -7.6775 -0.0052 21 6 13.0686 -9.0025 -0.0057 22 7 14.5089 -8.7349 -0.0058 23 6 15.2900 -8.5902 1.1024 24 6 16.5551 -8.3557 0.6987 25 6 16.5549 -8.3549 -0.7102 26 6 15.2899 -8.5896 -1.1138 27 6 7.4021 -5.2954 1.1946 28 6 6.7150 -4.0958 1.1952 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.8483 -3.0427 -0.8907 32 1 3.8491 -3.0423 0.8892 33 1 5.8797 -1.6199 0.8888 34 1 5.8796 -1.6199 -0.8912 35 1 6.4447 -3.6269 -2.1342 36 1 7.6763 -5.7591 -2.1352 37 1 8.2424 -7.7670 -0.8934 38 1 8.2426 -7.7677 0.8864 39 1 10.2696 -6.0137 -0.0036 40 1 12.5675 -7.1063 0.8850 41 1 12.5665 -7.1054 -0.8950 42 1 12.8047 -9.5739 -0.8957 43 1 12.8056 -9.5743 0.8843 44 1 14.9528 -8.6488 2.1267 45 1 17.4111 -8.1974 1.3380 46 1 17.4107 -8.1956 -1.3494 47 1 14.9533 -8.6519 -2.1382 48 1 7.6684 -5.7656 2.1297 49 1 6.4445 -3.6289 2.1307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714425482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:43 Heat of formation + Delta-G solvation = 23.348593 kcal Electronic energy + Delta-G solvation = -26767.211876 eV Core-core repulsion = 22887.145097 eV Total energy + Delta-G solvation = -3880.066779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01978 -40.99055 -40.23311 -37.37730 -36.12745 -34.99299 -34.33565 -32.92332 -31.85280 -31.02170 -29.82919 -29.62637 -27.16643 -25.35741 -24.42363 -23.65620 -23.09519 -21.66520 -21.49982 -21.33495 -20.75078 -19.70587 -18.75998 -17.90595 -17.17656 -17.03505 -16.87990 -16.48722 -16.30325 -15.92671 -15.80427 -15.40748 -15.28525 -14.94271 -14.81823 -14.63359 -14.35920 -14.17953 -14.03641 -13.89715 -13.65135 -13.52822 -13.14431 -13.11529 -13.03279 -12.95865 -12.88724 -12.60557 -12.39027 -12.24235 -12.07043 -11.92855 -11.81583 -11.79711 -11.14480 -10.99740 -10.17674 -9.83212 -9.60199 -9.49204 -9.33871 -9.04011 -8.04939 -5.39977 0.24361 0.49437 1.37474 1.37529 1.41983 1.49518 1.54337 1.87765 2.17761 2.37967 2.47512 2.88048 3.26386 3.51659 3.63988 3.70431 3.75519 3.86658 3.92183 4.13439 4.16379 4.19850 4.26747 4.38154 4.39401 4.42002 4.45096 4.49340 4.55361 4.69082 4.72670 4.77425 4.77483 4.82123 4.84334 5.05733 5.08446 5.22640 5.22762 5.32325 5.43196 5.46298 5.46346 5.60684 5.72487 5.76083 6.06044 6.11690 6.18579 6.35735 6.45749 6.52158 7.05314 7.14521 7.79936 8.00924 9.16584 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.001347 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.315911 B =20777.973847 C =21295.644208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.759 5.759 10 C 0.163 3.837 11 C -0.083 4.083 12 C -0.073 4.073 13 C -0.125 4.125 14 C -0.098 4.098 15 C -0.115 4.115 16 C 0.169 3.831 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.581 6.581 20 C -0.145 4.145 21 C 0.123 3.877 22 N -0.450 5.450 23 C -0.024 4.024 24 C -0.223 4.223 25 C -0.224 4.224 26 C -0.024 4.024 27 C -0.098 4.098 28 C -0.126 4.126 29 H 0.259 0.741 30 H 0.368 0.632 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.415 0.585 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.178 0.822 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.178 0.822 48 H 0.139 0.861 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.991 -16.629 -0.003 38.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.405 5.405 10 C 0.037 3.963 11 C -0.121 4.121 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.046 3.954 17 N -0.365 5.365 18 C 0.307 3.693 19 O -0.462 6.462 20 C -0.185 4.185 21 C 0.001 3.999 22 N -0.125 5.125 23 C -0.154 4.154 24 C -0.248 4.248 25 C -0.248 4.248 26 C -0.154 4.154 27 C -0.116 4.116 28 C -0.144 4.144 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.195 0.805 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.195 0.805 48 H 0.157 0.843 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 34.122 -17.631 0.001 38.408 hybrid contribution -0.293 1.484 0.001 1.513 sum 33.829 -16.147 0.001 37.486 Atomic orbital electron populations 1.69898 1.07301 1.26886 1.59342 1.25582 0.96181 1.01546 1.02180 0.85337 0.78710 0.79011 0.78282 1.20170 1.22121 1.17244 1.19039 0.82803 0.93505 1.42037 0.92977 1.42708 1.02510 1.04226 1.91079 1.20692 0.90407 0.87257 0.97968 1.20709 0.92698 0.94966 1.03716 1.19897 0.97224 0.96162 0.94077 1.21248 0.98940 0.96317 0.97845 1.21215 0.97355 0.94761 0.98265 1.19790 1.01531 0.96765 0.93508 1.20069 0.79122 0.93304 1.02929 1.46031 1.05830 1.10169 1.74484 1.20757 0.89092 0.84519 0.74967 1.90742 1.81114 1.22801 1.51516 1.21935 0.89699 0.99640 1.07221 1.21530 0.76009 0.96586 1.05772 1.44282 1.07626 1.54498 1.06143 1.22233 0.91249 1.09373 0.92516 1.21193 0.97187 1.10808 0.95613 1.21191 0.97183 1.10816 0.95612 1.22231 0.91262 1.09357 0.92516 1.21212 0.97377 0.94747 0.98264 1.21248 0.99000 0.96280 0.97851 0.93217 0.79831 0.96128 0.96243 0.90215 0.90094 0.85312 0.84302 0.90850 0.90855 0.74870 0.86558 0.86548 0.88636 0.88644 0.80480 0.84178 0.84180 0.80481 0.84319 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.39 13.97 21.65 0.30 -63.08 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 44.82 27.73 68.60 1.90 46.73 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 7 C -0.24 -14.09 10.47 84.03 0.88 -13.21 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 9 N -0.76 -35.50 5.41 -343.45 -1.86 -37.36 16 10 C 0.16 6.14 6.24 86.38 0.54 6.68 16 11 C -0.08 -2.27 5.46 29.85 0.16 -2.11 16 12 C -0.07 -1.68 5.13 -19.87 -0.10 -1.79 16 13 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 14 C -0.10 -1.61 9.70 22.27 0.22 -1.39 16 15 C -0.12 -1.76 5.25 -19.87 -0.10 -1.86 16 16 C 0.17 2.27 5.80 85.63 0.50 2.77 16 17 N -0.71 -7.20 5.55 -466.78 -2.59 -9.79 16 18 C 0.52 6.37 7.83 87.66 0.69 7.06 16 19 O -0.58 -11.99 15.98 -3.03 -0.05 -12.03 16 20 C -0.14 -0.93 6.02 29.85 0.18 -0.75 16 21 C 0.12 1.13 5.38 86.38 0.46 1.59 16 22 N -0.45 -5.22 2.75 -524.48 -1.44 -6.66 16 23 C -0.02 -0.30 11.43 83.21 0.95 0.65 16 24 C -0.22 -3.18 10.86 22.14 0.24 -2.94 16 25 C -0.22 -3.18 10.86 22.14 0.24 -2.94 16 26 C -0.02 -0.30 11.43 83.21 0.95 0.65 16 27 C -0.10 -1.61 9.70 22.27 0.22 -1.40 16 28 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 29 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.37 16.02 5.53 -92.71 -0.51 15.50 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.08 2.08 8.09 -2.38 -0.02 2.06 16 35 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 39 H 0.41 2.54 8.46 -92.71 -0.78 1.76 16 40 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.10 0.94 8.10 -2.38 -0.02 0.92 16 43 H 0.10 0.94 8.10 -2.38 -0.02 0.92 16 44 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 45 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 46 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 47 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 48 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 49 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -76.13 414.54 2.78 -73.35 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.41 Total: 25.83 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 6.92 Total: -16.98 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -5.58 Total: -116.89 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.05 Total: -12.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.73 kcal Total: -76.13 2.78 -73.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714425482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.697 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds