Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47338 * 239.99836 * 3 2 1 5 5 H 1.48501 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47518 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00512 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00503 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.05984 * 54.96706 * 11 10 9 13 13 C 1.54265 * 110.03597 * 293.54670 * 11 10 9 14 14 C 1.54887 * 104.20056 * 217.10786 * 13 11 10 15 15 C 1.54890 * 102.91108 * 37.84875 * 14 13 11 16 16 C 1.53877 * 110.03089 * 176.38178 * 11 10 9 17 17 H 1.09001 * 110.03400 * 238.61662 * 16 11 10 18 18 N 1.46501 * 110.03146 * 0.02562 * 16 11 10 19 19 C 1.34773 * 119.99802 * 204.99958 * 18 16 11 20 20 O 1.21280 * 120.00169 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99584 * 180.02562 * 19 18 16 22 22 C 1.50700 * 109.46853 * 180.02562 * 21 19 18 23 23 C 1.34244 * 126.50476 * 264.68727 * 22 21 19 24 24 N 1.36826 * 109.93038 * 179.86979 * 23 22 21 25 25 H 0.97005 * 125.06245 * 180.18948 * 24 23 22 26 26 C 1.37688 * 109.87746 * 0.40479 * 24 23 22 27 27 C 1.39125 * 133.51281 * 179.75812 * 26 24 23 28 28 C 1.37751 * 119.78021 * 180.02562 * 27 26 24 29 29 C 1.38835 * 120.66551 * 0.02562 * 28 27 26 30 30 C 1.36619 * 120.52798 * 359.97438 * 29 28 27 31 31 C 1.39632 * 119.76516 * 0.04091 * 30 29 28 32 32 H 0.97004 * 119.99742 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99907 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.46787 * 60.00567 * 10 9 7 35 35 H 1.08993 * 109.47100 * 300.00253 * 10 9 7 36 36 H 1.09004 * 110.48891 * 98.42759 * 13 11 10 37 37 H 1.09006 * 110.48556 * 335.78657 * 13 11 10 38 38 H 1.09002 * 110.75856 * 156.25785 * 14 13 11 39 39 H 1.09006 * 110.75640 * 279.44771 * 14 13 11 40 40 H 1.09003 * 110.48855 * 80.83451 * 15 14 13 41 41 H 1.09003 * 110.48748 * 203.47148 * 15 14 13 42 42 H 0.96998 * 119.99889 * 25.00088 * 18 16 11 43 43 H 1.08999 * 109.46930 * 299.99559 * 21 19 18 44 44 H 1.08995 * 109.47331 * 60.00416 * 21 19 18 45 45 H 1.07995 * 125.02974 * 359.97438 * 23 22 21 46 46 H 1.08001 * 120.11020 * 0.02562 * 27 26 24 47 47 H 1.07991 * 119.66639 * 180.02562 * 28 27 26 48 48 H 1.08003 * 119.73469 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.11918 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3738 -4.7221 -0.8358 13 6 0.2807 -4.8448 1.3312 14 6 0.1125 -6.3523 1.6446 15 6 1.4644 -6.9539 1.1867 16 6 1.8178 -6.1579 -0.0890 17 1 1.4943 -6.7094 -0.9718 18 7 3.2617 -5.9173 -0.1485 19 6 4.0738 -6.8290 -0.7192 20 8 3.6092 -7.8484 -1.1840 21 6 5.5591 -6.5817 -0.7799 22 6 6.2342 -7.7434 -1.4624 23 6 6.8007 -8.8025 -0.8628 24 7 7.3101 -9.6544 -1.8046 25 1 7.7645 -10.4897 -1.6128 26 6 7.0861 -9.1471 -3.0648 27 6 7.3928 -9.5945 -4.3460 28 6 7.0256 -8.8418 -5.4397 29 6 6.3519 -7.6388 -5.2774 30 6 6.0407 -7.1806 -4.0285 31 6 6.4036 -7.9273 -2.9058 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 0.0016 34 1 2.6853 -3.7142 0.8912 35 1 2.6840 -3.7149 -0.8888 36 1 -0.6927 -4.3695 1.2095 37 1 0.8508 -4.3526 2.1192 38 1 -0.0388 -6.5103 2.7124 39 1 -0.7126 -6.7762 1.0721 40 1 2.2269 -6.8047 1.9512 41 1 1.3528 -8.0142 0.9598 42 1 3.6332 -5.1019 0.2229 43 1 5.7527 -5.6681 -1.3420 44 1 5.9515 -6.4762 0.2315 45 1 6.8459 -8.9597 0.2047 46 1 7.9170 -10.5288 -4.4826 47 1 7.2642 -9.1910 -6.4333 48 1 6.0708 -7.0609 -6.1455 49 1 5.5160 -6.2441 -3.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716073640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = 26.071778 kcal Electronic energy + Delta-G solvation = -29063.880011 eV Core-core repulsion = 25183.931318 eV Total energy + Delta-G solvation = -3879.948693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40086 -39.86618 -37.89569 -36.96985 -34.34890 -33.46442 -33.09785 -31.39568 -30.38513 -29.38359 -28.56166 -28.01429 -26.40184 -24.52583 -22.94865 -22.45825 -21.86811 -21.21128 -20.40186 -19.37960 -18.92093 -17.96076 -17.29745 -16.87772 -16.52550 -15.74634 -15.55193 -15.17741 -14.96856 -14.56080 -14.54644 -14.23124 -14.00409 -13.83667 -13.61279 -13.46614 -12.97278 -12.95569 -12.91623 -12.67137 -12.23982 -12.04069 -11.76344 -11.60146 -11.40132 -11.27213 -10.91303 -10.85013 -10.80525 -10.76999 -10.46488 -10.35384 -10.28207 -9.95715 -9.86373 -9.68624 -9.48802 -8.91593 -8.75001 -8.29683 -7.74949 -6.93777 -5.77575 -3.06412 1.04582 1.55992 2.49764 2.86311 2.98145 3.43125 3.47389 3.48623 3.50897 3.87929 4.55852 4.59815 4.66082 4.76053 4.80599 4.87328 4.99667 5.08001 5.11611 5.14812 5.24268 5.43039 5.47072 5.50470 5.55285 5.58426 5.68219 5.70795 5.74536 5.80887 5.82115 5.89860 5.97309 6.03434 6.08684 6.22818 6.24793 6.35802 6.38285 6.48150 6.53423 6.59580 6.61469 6.67294 6.68074 6.80381 6.86759 7.06865 7.38451 7.66823 7.75383 8.41046 8.47090 9.52411 10.10280 10.44844 11.45155 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002607 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.926324 B =10739.785830 C =12362.348696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.159 3.841 11 C -0.108 4.108 12 H 0.080 0.920 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.150 3.850 17 H 0.086 0.914 18 N -0.724 5.724 19 C 0.511 3.489 20 O -0.537 6.537 21 C -0.069 4.069 22 C -0.146 4.146 23 C 0.060 3.940 24 N -0.596 5.596 25 H 0.414 0.586 26 C 0.095 3.905 27 C -0.134 4.134 28 C -0.101 4.101 29 C -0.149 4.149 30 C -0.065 4.065 31 C -0.089 4.089 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.017 0.983 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.406 0.594 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.168 0.832 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.557 -20.818 -2.047 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.031 3.969 11 C -0.127 4.127 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.104 0.896 18 N -0.378 5.378 19 C 0.297 3.703 20 O -0.414 6.414 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.066 4.066 24 N -0.198 5.198 25 H 0.250 0.750 26 C -0.012 4.012 27 C -0.155 4.155 28 C -0.120 4.120 29 C -0.168 4.168 30 C -0.084 4.084 31 C -0.094 4.094 32 H 0.066 0.934 33 H 0.218 0.782 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.244 0.756 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.185 0.815 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.406 -21.518 -2.329 25.459 hybrid contribution 0.479 0.957 0.295 1.110 sum 13.884 -20.561 -2.034 24.893 Atomic orbital electron populations 1.69648 1.05117 1.25781 1.57549 1.24734 0.95508 0.97683 1.02955 0.86278 0.78534 0.83585 0.77834 1.21248 1.21712 1.21288 1.19165 0.90954 0.84188 1.42956 0.91276 1.42324 1.05893 0.99737 1.89338 1.20673 0.93369 0.85598 0.97295 1.22207 0.97869 0.93617 0.99002 0.90134 1.22348 1.00616 0.95078 0.96831 1.22490 0.96826 0.96376 1.00611 1.22781 0.97577 0.99295 0.97242 1.21624 0.79506 0.95868 0.98562 0.89553 1.46426 1.07552 1.23258 1.60594 1.20653 0.88766 0.83422 0.77461 1.90684 1.77149 1.27124 1.46425 1.19969 0.91411 0.97592 1.01971 1.19551 1.06465 0.98090 0.91247 1.21503 1.00002 0.90830 0.94310 1.41635 1.52379 1.21726 1.04103 0.74951 1.18225 1.01742 0.95130 0.86100 1.19974 1.05141 1.01074 0.89281 1.20775 0.98746 0.94880 0.97645 1.20629 1.01836 0.97296 0.97021 1.20315 0.97923 0.99095 0.91038 1.19003 1.02151 0.95285 0.92970 0.93449 0.78168 0.96523 0.96082 0.91274 0.91013 0.91769 0.91677 0.91447 0.91684 0.75583 0.88053 0.88269 0.81484 0.86543 0.85972 0.86092 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.81 5.43 -59.91 -0.33 -18.14 16 10 C 0.16 2.99 4.18 -4.04 -0.02 2.97 16 11 C -0.11 -1.71 2.98 -89.50 -0.27 -1.98 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.67 6.02 -25.07 -0.15 -1.82 16 14 C -0.13 -1.55 6.90 -24.74 -0.17 -1.72 16 15 C -0.13 -1.66 6.56 -24.97 -0.16 -1.82 16 16 C 0.15 2.13 3.22 -66.71 -0.22 1.92 16 17 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 18 N -0.72 -9.61 4.41 -52.62 -0.23 -9.84 16 19 C 0.51 7.05 7.82 -10.98 -0.09 6.96 16 20 O -0.54 -9.39 15.69 5.56 0.09 -9.30 16 21 C -0.07 -0.74 6.23 -29.03 -0.18 -0.92 16 22 C -0.15 -1.74 4.81 -102.71 -0.49 -2.23 16 23 C 0.06 0.58 11.73 -16.73 -0.20 0.38 16 24 N -0.60 -5.45 6.07 -10.65 -0.06 -5.52 16 25 H 0.41 2.38 8.96 -40.82 -0.37 2.01 16 26 C 0.09 1.10 7.28 -83.99 -0.61 0.49 16 27 C -0.13 -1.36 10.08 -39.43 -0.40 -1.75 16 28 C -0.10 -1.01 10.01 -39.54 -0.40 -1.40 16 29 C -0.15 -1.64 9.97 -39.95 -0.40 -2.04 16 30 C -0.07 -0.83 10.05 -39.65 -0.40 -1.22 16 31 C -0.09 -1.18 6.35 -105.13 -0.67 -1.84 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.38 9.98 7.51 -40.82 -0.31 9.68 16 34 H 0.02 0.31 7.05 -51.93 -0.37 -0.06 16 35 H 0.02 0.41 7.51 -51.93 -0.39 0.02 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.16 7.78 -51.93 -0.40 0.75 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.41 5.06 5.88 -40.82 -0.24 4.82 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 49 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -34.40 398.95 -11.38 -45.78 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.50 Total: 14.31 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -5.06 Total: -13.22 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.10 Total: -60.63 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.40 -11.38 -45.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.855 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds