Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47338 * 239.99836 * 3 2 1 5 5 H 1.48501 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47518 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00512 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00503 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.05984 * 54.96706 * 11 10 9 13 13 C 1.54265 * 110.03597 * 293.54670 * 11 10 9 14 14 C 1.54887 * 104.20056 * 217.10786 * 13 11 10 15 15 C 1.54890 * 102.91108 * 37.84875 * 14 13 11 16 16 C 1.53877 * 110.03089 * 176.38178 * 11 10 9 17 17 H 1.09001 * 110.03400 * 238.61662 * 16 11 10 18 18 N 1.46501 * 110.03146 * 0.02562 * 16 11 10 19 19 C 1.34773 * 119.99802 * 204.99958 * 18 16 11 20 20 O 1.21280 * 120.00169 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99584 * 180.02562 * 19 18 16 22 22 C 1.50700 * 109.46853 * 180.02562 * 21 19 18 23 23 C 1.34244 * 126.50476 * 264.68727 * 22 21 19 24 24 N 1.36826 * 109.93038 * 179.86979 * 23 22 21 25 25 H 0.97005 * 125.06245 * 180.18948 * 24 23 22 26 26 C 1.37688 * 109.87746 * 0.40479 * 24 23 22 27 27 C 1.39125 * 133.51281 * 179.75812 * 26 24 23 28 28 C 1.37751 * 119.78021 * 180.02562 * 27 26 24 29 29 C 1.38835 * 120.66551 * 0.02562 * 28 27 26 30 30 C 1.36619 * 120.52798 * 359.97438 * 29 28 27 31 31 C 1.39632 * 119.76516 * 0.04091 * 30 29 28 32 32 H 0.97004 * 119.99742 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99907 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.46787 * 60.00567 * 10 9 7 35 35 H 1.08993 * 109.47100 * 300.00253 * 10 9 7 36 36 H 1.09004 * 110.48891 * 98.42759 * 13 11 10 37 37 H 1.09006 * 110.48556 * 335.78657 * 13 11 10 38 38 H 1.09002 * 110.75856 * 156.25785 * 14 13 11 39 39 H 1.09006 * 110.75640 * 279.44771 * 14 13 11 40 40 H 1.09003 * 110.48855 * 80.83451 * 15 14 13 41 41 H 1.09003 * 110.48748 * 203.47148 * 15 14 13 42 42 H 0.96998 * 119.99889 * 25.00088 * 18 16 11 43 43 H 1.08999 * 109.46930 * 299.99559 * 21 19 18 44 44 H 1.08995 * 109.47331 * 60.00416 * 21 19 18 45 45 H 1.07995 * 125.02974 * 359.97438 * 23 22 21 46 46 H 1.08001 * 120.11020 * 0.02562 * 27 26 24 47 47 H 1.07991 * 119.66639 * 180.02562 * 28 27 26 48 48 H 1.08003 * 119.73469 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.11918 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3738 -4.7221 -0.8358 13 6 0.2807 -4.8448 1.3312 14 6 0.1125 -6.3523 1.6446 15 6 1.4644 -6.9539 1.1867 16 6 1.8178 -6.1579 -0.0890 17 1 1.4943 -6.7094 -0.9718 18 7 3.2617 -5.9173 -0.1485 19 6 4.0738 -6.8290 -0.7192 20 8 3.6092 -7.8484 -1.1840 21 6 5.5591 -6.5817 -0.7799 22 6 6.2342 -7.7434 -1.4624 23 6 6.8007 -8.8025 -0.8628 24 7 7.3101 -9.6544 -1.8046 25 1 7.7645 -10.4897 -1.6128 26 6 7.0861 -9.1471 -3.0648 27 6 7.3928 -9.5945 -4.3460 28 6 7.0256 -8.8418 -5.4397 29 6 6.3519 -7.6388 -5.2774 30 6 6.0407 -7.1806 -4.0285 31 6 6.4036 -7.9273 -2.9058 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 0.0016 34 1 2.6853 -3.7142 0.8912 35 1 2.6840 -3.7149 -0.8888 36 1 -0.6927 -4.3695 1.2095 37 1 0.8508 -4.3526 2.1192 38 1 -0.0388 -6.5103 2.7124 39 1 -0.7126 -6.7762 1.0721 40 1 2.2269 -6.8047 1.9512 41 1 1.3528 -8.0142 0.9598 42 1 3.6332 -5.1019 0.2229 43 1 5.7527 -5.6681 -1.3420 44 1 5.9515 -6.4762 0.2315 45 1 6.8459 -8.9597 0.2047 46 1 7.9170 -10.5288 -4.4826 47 1 7.2642 -9.1910 -6.4333 48 1 6.0708 -7.0609 -6.1455 49 1 5.5160 -6.2441 -3.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716073640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = 5.284778 kcal Electronic energy + Delta-G solvation = -29064.781403 eV Core-core repulsion = 25183.931318 eV Total energy + Delta-G solvation = -3880.850085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17919 -41.02070 -39.10783 -37.74863 -36.18571 -34.60415 -33.93314 -33.26814 -31.22444 -30.19553 -30.12710 -29.01405 -27.37096 -26.28065 -24.18152 -23.73418 -22.65450 -22.27203 -21.52337 -20.33203 -20.19924 -19.16926 -18.67703 -18.11265 -17.30975 -16.94258 -16.56609 -16.34086 -16.32439 -15.94974 -15.47608 -15.25518 -15.21961 -14.97670 -14.88193 -14.65681 -14.57895 -14.27479 -13.76106 -13.59439 -13.38212 -13.10706 -12.97164 -12.75334 -12.66417 -12.54627 -12.31767 -12.26319 -12.18892 -11.92067 -11.74779 -11.69099 -11.68397 -11.51723 -11.42269 -10.89060 -10.88717 -10.43056 -9.92808 -9.10019 -8.96582 -8.53188 -7.91979 -5.20425 0.24453 0.73197 1.49691 1.52390 1.58232 1.68292 1.79618 2.29816 2.47472 2.59113 3.02920 3.41558 3.51332 3.70919 3.82781 3.89504 3.92644 4.03209 4.18125 4.22167 4.25037 4.39920 4.42486 4.45914 4.52837 4.56619 4.59341 4.63721 4.71021 4.71388 4.79119 4.83489 4.94221 4.96597 5.02308 5.04491 5.12450 5.24417 5.25204 5.30928 5.38809 5.50230 5.53069 5.59012 5.66900 5.72559 5.79844 5.86061 6.27698 6.29721 6.67715 6.77661 7.36618 7.39620 8.12731 8.35485 9.31542 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002607 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.926324 B =10739.785830 C =12362.348696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.161 3.839 11 C -0.100 4.100 12 H 0.066 0.934 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.155 3.845 17 H 0.070 0.930 18 N -0.720 5.720 19 C 0.512 3.488 20 O -0.576 6.576 21 C -0.061 4.061 22 C -0.183 4.183 23 C 0.073 3.927 24 N -0.585 5.585 25 H 0.430 0.570 26 C 0.075 3.925 27 C -0.134 4.134 28 C -0.110 4.110 29 C -0.156 4.156 30 C -0.097 4.097 31 C -0.120 4.120 32 H 0.250 0.750 33 H 0.373 0.627 34 H 0.033 0.967 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.411 0.589 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.202 0.798 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.134 0.866 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.635 -22.350 -1.128 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.034 3.966 11 C -0.120 4.120 12 H 0.084 0.916 13 C -0.146 4.146 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.049 3.951 17 H 0.088 0.912 18 N -0.374 5.374 19 C 0.300 3.700 20 O -0.456 6.456 21 C -0.101 4.101 22 C -0.190 4.190 23 C -0.055 4.055 24 N -0.189 5.189 25 H 0.270 0.730 26 C -0.033 4.033 27 C -0.154 4.154 28 C -0.129 4.129 29 C -0.175 4.175 30 C -0.115 4.115 31 C -0.125 4.125 32 H 0.059 0.941 33 H 0.205 0.795 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.250 0.750 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.219 0.781 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.152 0.848 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.540 -23.086 -1.402 27.865 hybrid contribution -0.133 1.343 -0.036 1.350 sum 15.407 -21.743 -1.438 26.687 Atomic orbital electron populations 1.69813 1.06653 1.26039 1.59607 1.25549 0.96337 1.01083 1.03866 0.85237 0.77186 0.79259 0.78233 1.20511 1.22504 1.20149 1.19621 0.91625 0.85238 1.40996 0.90273 1.42536 1.05627 1.00998 1.89264 1.20807 0.93750 0.84423 0.97585 1.22093 0.97280 0.93416 0.99176 0.91591 1.22278 0.99514 0.97059 0.95788 1.22443 0.96918 0.93916 1.01917 1.22710 0.97906 0.99047 0.96319 1.21484 0.79993 0.94645 0.98956 0.91174 1.46392 1.07102 1.23440 1.60471 1.21213 0.90005 0.82581 0.76219 1.90661 1.78040 1.28823 1.48051 1.19976 0.88864 0.97484 1.03809 1.19797 1.08497 0.99677 0.91075 1.22055 0.97929 0.89704 0.95770 1.41672 1.51799 1.22175 1.03262 0.73008 1.18506 1.02194 0.95134 0.87419 1.20363 1.04436 1.01895 0.88742 1.21135 0.98262 0.94370 0.99084 1.20906 1.01644 0.98038 0.96899 1.20441 0.99494 0.99472 0.92113 1.19392 1.02961 0.96308 0.93839 0.94118 0.79477 0.94952 0.96182 0.92554 0.91961 0.89920 0.90951 0.90563 0.91391 0.75009 0.87810 0.85013 0.78079 0.83811 0.83252 0.84834 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.52 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.59 5.43 -343.46 -1.87 -38.45 16 10 C 0.16 6.02 4.18 86.38 0.36 6.38 16 11 C -0.10 -3.19 2.98 -10.07 -0.03 -3.22 16 12 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.11 -3.21 6.02 31.67 0.19 -3.02 16 14 C -0.11 -2.63 6.90 31.88 0.22 -2.41 16 15 C -0.12 -2.88 6.56 31.74 0.21 -2.67 16 16 C 0.16 4.34 3.22 45.78 0.15 4.48 16 17 H 0.07 2.22 7.57 -2.39 -0.02 2.20 16 18 N -0.72 -18.51 4.41 -438.77 -1.94 -20.45 16 19 C 0.51 13.82 7.82 87.66 0.69 14.50 16 20 O -0.58 -20.18 15.69 -3.03 -0.05 -20.23 16 21 C -0.06 -1.24 6.23 29.10 0.18 -1.06 16 22 C -0.18 -4.20 4.81 -18.62 -0.09 -4.29 16 23 C 0.07 1.25 11.73 83.00 0.97 2.22 16 24 N -0.59 -9.55 6.07 -187.61 -1.14 -10.69 16 25 H 0.43 3.85 8.96 -92.70 -0.83 3.02 16 26 C 0.07 1.66 7.28 39.03 0.28 1.94 16 27 C -0.13 -2.50 10.08 22.37 0.23 -2.28 16 28 C -0.11 -2.05 10.01 22.30 0.22 -1.83 16 29 C -0.16 -3.47 9.97 22.03 0.22 -3.25 16 30 C -0.10 -2.56 10.05 22.23 0.22 -2.33 16 31 C -0.12 -3.18 6.35 -20.20 -0.13 -3.31 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.37 19.88 7.51 -92.70 -0.70 19.18 16 34 H 0.03 1.14 7.05 -2.39 -0.02 1.13 16 35 H 0.02 0.77 7.51 -2.39 -0.02 0.75 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 1.96 7.78 -2.38 -0.02 1.94 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.41 9.70 5.88 -92.71 -0.55 9.16 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 47 H 0.15 1.86 8.06 -2.92 -0.02 1.84 16 48 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 49 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -75.41 398.95 1.44 -73.97 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -1.09 Total: 43.47 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 5.20 Total: -16.37 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -4.66 Total: -128.36 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.41 1.44 -73.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.258 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds