Wall clock time and date at job start Sat Apr 11 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48510 * 109.46979 * 269.99822 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47277 * 150.00148 * 3 2 1 7 7 C 1.38814 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99828 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46614 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.82181 * 51.66261 * 11 10 9 13 13 C 1.54893 * 110.75349 * 288.32551 * 11 10 9 14 14 C 1.54266 * 104.19500 * 203.74603 * 13 11 10 15 15 C 1.53872 * 106.60044 * 23.61099 * 14 13 11 16 16 C 1.54266 * 106.59640 * 359.97438 * 15 14 13 17 17 H 1.09001 * 110.48620 * 95.07012 * 16 15 14 18 18 N 1.46506 * 110.48818 * 217.70889 * 16 15 14 19 19 C 1.34771 * 120.00040 * 273.54848 * 18 16 15 20 20 O 1.21282 * 120.00064 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99845 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.47063 * 180.02562 * 21 19 18 23 23 C 1.34244 * 126.49885 * 264.68950 * 22 21 19 24 24 N 1.36833 * 109.93050 * 179.83187 * 23 22 21 25 25 H 0.96995 * 125.06230 * 180.18195 * 24 23 22 26 26 C 1.37694 * 109.87170 * 0.44582 * 24 23 22 27 27 C 1.39121 * 133.50669 * 179.71871 * 26 24 23 28 28 C 1.37753 * 119.77589 * 180.02562 * 27 26 24 29 29 C 1.38831 * 120.66883 * 359.97438 * 28 27 26 30 30 C 1.36629 * 120.52667 * 0.02562 * 29 28 27 31 31 C 1.39626 * 119.76305 * 0.02562 * 30 29 28 32 32 H 0.97002 * 119.99547 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99346 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.47137 * 60.00588 * 10 9 7 35 35 H 1.08996 * 109.47307 * 299.99825 * 10 9 7 36 36 H 1.09002 * 110.48578 * 85.07081 * 13 11 10 37 37 H 1.08998 * 110.60430 * 322.47968 * 13 11 10 38 38 H 1.09002 * 110.02957 * 264.32709 * 14 13 11 39 39 H 1.09000 * 110.07144 * 142.92082 * 14 13 11 40 40 H 1.09003 * 110.03622 * 240.71485 * 15 14 13 41 41 H 1.09005 * 110.03465 * 119.28158 * 15 14 13 42 42 H 0.97005 * 119.99609 * 93.54377 * 18 16 15 43 43 H 1.08998 * 109.47060 * 299.99735 * 21 19 18 44 44 H 1.08999 * 109.47191 * 60.00123 * 21 19 18 45 45 H 1.07998 * 125.03632 * 359.97438 * 23 22 21 46 46 H 1.07998 * 120.11541 * 359.97438 * 27 26 24 47 47 H 1.08000 * 119.66599 * 179.97438 * 28 27 26 48 48 H 1.07998 * 119.73287 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.11395 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3319 -4.7033 -0.8006 13 6 0.3603 -4.9412 1.3735 14 6 -0.0929 -6.4144 1.4377 15 6 0.8248 -7.1986 0.4834 16 6 1.8032 -6.1745 -0.1279 17 1 2.7355 -6.1537 0.4365 18 7 2.0613 -6.4887 -1.5353 19 6 3.0347 -7.3611 -1.8634 20 8 3.6967 -7.8864 -0.9935 21 6 3.2999 -7.6848 -3.3112 22 6 4.4285 -8.6790 -3.4052 23 6 5.7257 -8.3978 -3.6056 24 7 6.4556 -9.5549 -3.6291 25 1 7.4157 -9.6056 -3.7574 26 6 5.6233 -10.6371 -3.4496 27 6 5.8365 -12.0108 -3.3957 28 6 4.7708 -12.8612 -3.1988 29 6 3.4838 -12.3617 -3.0527 30 6 3.2518 -11.0161 -3.1024 31 6 4.3172 -10.1360 -3.3021 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.6846 -3.7147 0.8895 35 1 2.6846 -3.7147 -0.8905 36 1 -0.5009 -4.2748 1.4216 37 1 1.0575 -4.7211 2.1819 38 1 -1.1299 -6.5005 1.1132 39 1 0.0129 -6.7944 2.4538 40 1 0.2331 -7.6653 -0.3042 41 1 1.3767 -7.9586 1.0366 42 1 1.5315 -6.0688 -2.2310 43 1 2.4021 -8.1115 -3.7584 44 1 3.5728 -6.7734 -3.8432 45 1 6.1333 -7.4051 -3.7276 46 1 6.8339 -12.4092 -3.5087 47 1 4.9383 -13.9274 -3.1577 48 1 2.6593 -13.0422 -2.8995 49 1 2.2478 -10.6348 -2.9884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716073643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:01 Heat of formation + Delta-G solvation = 16.845359 kcal Electronic energy + Delta-G solvation = -28747.218783 eV Core-core repulsion = 24866.870003 eV Total energy + Delta-G solvation = -3880.348780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44720 -39.75095 -37.87154 -37.03088 -34.42718 -33.49313 -33.14786 -31.38536 -30.45004 -29.43962 -28.57964 -28.05030 -26.50049 -24.42998 -23.00559 -22.16580 -21.92844 -21.19982 -20.20696 -19.72757 -19.19031 -17.99637 -17.23790 -16.69410 -16.55195 -16.33177 -15.64953 -15.05917 -14.83930 -14.60454 -14.44725 -14.17733 -13.96513 -13.92742 -13.64662 -13.21880 -13.15198 -13.03406 -12.83882 -12.75526 -12.28539 -12.04743 -11.83898 -11.82208 -11.52690 -11.23221 -10.97514 -10.91568 -10.87441 -10.72739 -10.41782 -10.28933 -10.20517 -9.97810 -9.90788 -9.69216 -9.53942 -8.85855 -8.82946 -8.35224 -7.80290 -6.90209 -5.75827 -3.03841 0.98480 1.49397 2.45364 2.81365 2.95156 3.43101 3.43679 3.49077 3.50737 3.80884 4.54282 4.56816 4.61328 4.74655 4.76607 4.88924 4.91752 5.02460 5.08048 5.08591 5.18623 5.33913 5.40706 5.50283 5.52962 5.58583 5.66346 5.68154 5.71471 5.73161 5.82451 5.87024 5.96337 5.99595 6.13083 6.22747 6.31173 6.31989 6.36963 6.46081 6.53515 6.54079 6.59451 6.62139 6.68933 6.81015 6.95423 7.00850 7.34839 7.68478 7.71245 8.41793 8.43474 9.54639 10.12977 10.47993 11.47088 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002203 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.299519 B =12704.952977 C =14034.911171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.162 3.838 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.091 0.909 18 N -0.722 5.722 19 C 0.512 3.488 20 O -0.533 6.533 21 C -0.067 4.067 22 C -0.150 4.150 23 C 0.064 3.936 24 N -0.595 5.595 25 H 0.415 0.585 26 C 0.095 3.905 27 C -0.132 4.132 28 C -0.103 4.103 29 C -0.149 4.149 30 C -0.067 4.067 31 C -0.089 4.089 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.400 0.600 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.170 0.830 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 -24.764 -8.790 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.109 0.891 18 N -0.373 5.373 19 C 0.298 3.702 20 O -0.409 6.409 21 C -0.108 4.108 22 C -0.158 4.158 23 C -0.062 4.062 24 N -0.197 5.197 25 H 0.252 0.748 26 C -0.012 4.012 27 C -0.153 4.153 28 C -0.122 4.122 29 C -0.168 4.168 30 C -0.085 4.085 31 C -0.093 4.093 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.235 0.765 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.187 0.813 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.767 -24.997 -8.160 27.418 hybrid contribution 0.374 1.225 -0.343 1.326 sum 8.141 -23.772 -8.503 26.527 Atomic orbital electron populations 1.69659 1.05062 1.25571 1.57986 1.24730 0.95532 0.97640 1.03192 0.86198 0.78668 0.83906 0.77479 1.21776 1.21795 1.20812 1.19229 0.91003 0.84221 1.42366 0.91309 1.42336 1.05818 0.99892 1.89447 1.20636 0.92943 0.85165 0.97809 1.22545 0.97849 0.93323 0.98374 0.90146 1.22287 1.00712 0.95206 0.96716 1.22124 0.98985 0.95898 0.99103 1.22498 0.97454 0.98118 0.98927 1.21839 0.98793 0.93731 0.81309 0.89061 1.46094 1.36911 1.45571 1.08763 1.20641 0.79597 0.78764 0.91241 1.90703 1.48224 1.51094 1.50854 1.19955 0.97926 0.98716 0.94162 1.19536 0.93445 0.91514 1.11264 1.21580 0.91072 0.90235 1.03342 1.41669 1.09329 1.04489 1.64261 0.74843 1.18236 0.90157 0.89029 1.03790 1.19993 0.99446 0.89391 1.06429 1.20765 0.92247 0.98986 1.00187 1.20602 0.96943 0.95089 1.04199 1.20248 0.97706 0.92513 0.98067 1.18992 0.92568 0.92651 1.05113 0.93572 0.78280 0.96284 0.96448 0.90844 0.91280 0.91998 0.92075 0.91815 0.91727 0.76536 0.88349 0.88084 0.81299 0.86488 0.85979 0.86209 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.23 5.52 -59.91 -0.33 -18.56 16 10 C 0.16 3.24 5.70 -4.04 -0.02 3.21 16 11 C -0.10 -1.59 2.50 -88.64 -0.22 -1.81 16 12 H 0.08 1.24 8.02 -51.93 -0.42 0.83 16 13 C -0.11 -1.68 6.20 -25.07 -0.16 -1.83 16 14 C -0.12 -1.53 6.80 -25.61 -0.17 -1.71 16 15 C -0.13 -1.67 6.53 -25.61 -0.17 -1.83 16 16 C 0.15 2.08 2.60 -66.28 -0.17 1.91 16 17 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 18 N -0.72 -8.80 5.11 -52.21 -0.27 -9.07 16 19 C 0.51 6.71 7.82 -10.99 -0.09 6.62 16 20 O -0.53 -9.20 15.75 5.56 0.09 -9.11 16 21 C -0.07 -0.65 6.23 -29.03 -0.18 -0.84 16 22 C -0.15 -1.71 4.81 -102.71 -0.49 -2.20 16 23 C 0.06 0.62 11.73 -16.73 -0.20 0.43 16 24 N -0.60 -5.38 6.07 -10.65 -0.06 -5.44 16 25 H 0.41 2.40 8.96 -40.82 -0.37 2.04 16 26 C 0.09 1.05 7.28 -83.99 -0.61 0.44 16 27 C -0.13 -1.25 10.08 -39.43 -0.40 -1.65 16 28 C -0.10 -0.93 10.01 -39.54 -0.40 -1.32 16 29 C -0.15 -1.45 9.97 -39.94 -0.40 -1.85 16 30 C -0.07 -0.75 10.05 -39.65 -0.40 -1.15 16 31 C -0.09 -1.08 6.35 -105.14 -0.67 -1.75 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.98 7.67 -40.82 -0.31 9.67 16 34 H 0.02 0.40 7.99 -51.93 -0.41 -0.01 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.10 7.94 -51.93 -0.41 0.68 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 4.04 8.53 -40.82 -0.35 3.69 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -35.17 404.70 -11.46 -46.63 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.70 Total: 12.02 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -4.99 Total: -12.64 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.06 Total: -60.40 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.17 -11.46 -46.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.478 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds