Wall clock time and date at job start Sat Apr 11 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47156 * 269.99472 * 3 2 1 5 5 H 1.48498 * 109.46819 * 29.99621 * 3 2 1 6 6 H 1.48498 * 109.47008 * 149.99628 * 3 2 1 7 7 C 1.38953 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99397 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00544 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99876 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99908 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47289 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.47486 * 295.00249 * 15 14 13 17 17 N 1.46503 * 109.46769 * 55.00228 * 15 14 13 18 18 C 1.34784 * 119.99794 * 204.99827 * 17 15 14 19 19 O 1.21281 * 119.99969 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99831 * 179.97438 * 18 17 15 21 21 C 1.53006 * 112.90818 * 311.25235 * 20 18 17 22 22 F 1.39901 * 109.46987 * 48.75019 * 21 20 18 23 23 C 1.53779 * 113.61123 * 180.02562 * 20 18 17 24 24 C 1.53787 * 87.07963 * 220.01652 * 23 20 18 25 25 C 1.53779 * 113.61419 * 82.50381 * 20 18 17 26 26 C 1.52994 * 109.47317 * 174.99811 * 15 14 13 27 27 C 1.52996 * 117.50219 * 248.62258 * 26 15 14 28 28 C 1.52990 * 60.00328 * 252.50885 * 27 26 15 29 29 H 0.97003 * 119.99634 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00457 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46926 * 60.00222 * 12 10 9 32 32 H 1.09003 * 109.46767 * 300.00329 * 12 10 9 33 33 H 1.00899 * 111.00204 * 56.04894 * 13 12 10 34 34 H 1.09003 * 109.46862 * 59.99842 * 14 13 12 35 35 H 1.08999 * 109.46873 * 300.00517 * 14 13 12 36 36 H 0.96996 * 120.00366 * 24.99512 * 17 15 14 37 37 H 1.08997 * 109.46800 * 168.75297 * 21 20 18 38 38 H 1.08999 * 109.46973 * 288.74953 * 21 20 18 39 39 H 1.08997 * 113.61646 * 105.47284 * 23 20 18 40 40 H 1.08998 * 113.69354 * 334.57592 * 23 20 18 41 41 H 1.09004 * 113.61202 * 139.98084 * 24 23 20 42 42 H 1.08994 * 113.61447 * 270.88515 * 24 23 20 43 43 H 1.09002 * 113.61557 * 25.43210 * 25 20 18 44 44 H 1.09004 * 113.61501 * 254.52631 * 25 20 18 45 45 H 1.09008 * 115.55202 * 34.33419 * 26 15 14 46 46 H 1.08997 * 117.50004 * 0.02562 * 27 26 15 47 47 H 1.09001 * 117.49882 * 145.02019 * 27 26 15 48 48 H 1.09003 * 117.50635 * 252.50854 * 28 27 26 49 49 H 1.09005 * 117.51694 * 107.48062 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0504 -3.7556 -0.0006 14 6 7.5189 -3.7948 -0.0012 15 6 7.9902 -5.2504 -0.0012 16 1 7.6893 -5.7297 0.9303 17 7 7.3864 -5.9591 -1.1324 18 6 7.2242 -7.2961 -1.0808 19 8 7.5776 -7.9124 -0.0979 20 6 6.6026 -8.0251 -2.2441 21 6 5.3053 -7.3753 -2.7297 22 9 5.5060 -6.0007 -2.8956 23 6 6.4877 -9.5435 -2.0292 24 6 6.8968 -9.7037 -3.5029 25 6 7.5954 -8.3392 -3.3758 26 6 9.5143 -5.2929 -0.1276 27 6 10.1002 -5.8410 -1.4304 28 6 10.1836 -6.6687 -0.1464 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 -0.0004 31 1 5.9241 -1.8568 0.8901 32 1 5.9240 -1.8567 -0.8900 33 1 5.6749 -4.2716 -0.7822 34 1 7.8961 -3.2911 0.8888 35 1 7.8954 -3.2905 -0.8912 36 1 7.1034 -5.4662 -1.9183 37 1 5.0118 -7.8173 -3.6818 38 1 4.5183 -7.5414 -1.9941 39 1 5.4722 -9.8791 -1.8190 40 1 7.2194 -9.9431 -1.3270 41 1 7.5840 -10.5317 -3.6777 42 1 6.0533 -9.6995 -4.1931 43 1 8.6307 -8.4081 -3.0418 44 1 7.4738 -7.7029 -4.2524 45 1 10.0496 -4.4795 0.3623 46 1 9.3998 -6.1709 -2.1976 47 1 11.0210 -5.3881 -1.7979 48 1 11.1592 -6.7604 0.3309 49 1 9.5380 -7.5435 -0.0683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716621493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:04 Heat of formation + Delta-G solvation = -64.824330 kcal Electronic energy + Delta-G solvation = -31115.353363 eV Core-core repulsion = 26800.693894 eV Total energy + Delta-G solvation = -4314.659469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.99388 -40.87299 -39.01612 -38.35730 -36.97663 -35.60755 -33.98525 -33.45868 -31.64697 -30.11714 -28.82963 -26.58308 -26.04373 -24.93799 -23.95297 -22.58030 -22.14075 -21.63240 -20.07840 -19.47518 -19.15863 -18.33249 -17.63730 -16.64972 -16.54073 -16.16952 -16.04265 -15.79122 -15.59465 -15.39102 -14.85385 -14.73304 -14.46139 -14.34422 -14.03628 -13.80025 -13.24476 -13.19364 -12.82847 -12.73432 -12.46567 -12.33249 -12.24390 -12.04833 -11.88270 -11.82394 -11.65716 -11.54023 -11.42722 -11.25590 -11.14304 -10.75071 -10.71763 -10.58851 -10.50763 -10.07844 -9.96087 -9.69101 -9.55720 -9.05742 -8.56429 -8.18378 -8.12425 -6.29859 -3.81066 2.45561 3.03528 3.03684 3.07249 3.15620 3.68949 3.76380 3.93526 3.98461 4.04745 4.11467 4.14104 4.37108 4.50793 4.66557 4.76736 4.79205 4.86638 4.88202 4.89158 5.01731 5.16286 5.21251 5.25066 5.30975 5.34214 5.35983 5.43468 5.53006 5.54292 5.59312 5.63471 5.66840 5.70983 5.78642 5.83115 5.89044 5.95303 5.98429 6.02682 6.19670 6.45931 7.06917 7.44738 7.57526 7.60175 8.15621 8.15968 8.61513 8.96529 9.43975 9.84731 10.83383 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.002795 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.556059 B =10014.681772 C =11289.075655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.562 6.562 12 C 0.047 3.953 13 N -0.667 5.667 14 C 0.054 3.946 15 C 0.176 3.824 16 H 0.101 0.899 17 N -0.714 5.714 18 C 0.535 3.465 19 O -0.533 6.533 20 C -0.147 4.147 21 C 0.087 3.913 22 F -0.206 7.206 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.119 4.119 26 C -0.166 4.166 27 C -0.179 4.179 28 C -0.183 4.183 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.352 0.648 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.899 -13.641 -8.067 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.444 6.444 12 C -0.085 4.085 13 N -0.301 5.301 14 C -0.076 4.076 15 C 0.071 3.929 16 H 0.119 0.881 17 N -0.369 5.369 18 C 0.321 3.679 19 O -0.410 6.410 20 C -0.150 4.150 21 C 0.032 3.968 22 F -0.187 7.187 23 C -0.144 4.144 24 C -0.180 4.180 25 C -0.157 4.157 26 C -0.186 4.186 27 C -0.216 4.216 28 C -0.219 4.219 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.454 -14.684 -6.689 26.053 hybrid contribution 0.682 2.254 -1.206 2.646 sum 21.136 -12.430 -7.895 25.760 Atomic orbital electron populations 1.69626 1.05639 1.27452 1.49536 1.25038 0.95491 0.97958 0.97708 0.86666 0.79818 0.84057 0.78819 1.19691 1.20199 1.19468 1.19430 0.79258 0.96612 1.47953 0.86311 1.42199 1.07514 1.06131 1.67257 1.19697 0.88177 0.84577 0.83928 1.90566 1.69402 1.30918 1.53491 1.21723 0.95157 0.90354 1.01308 1.60022 1.05505 1.12721 1.51835 1.22214 0.89063 0.94831 1.01457 1.20528 0.89253 0.92082 0.91021 0.88129 1.46361 1.62241 1.07464 1.20876 1.20021 0.78077 0.82235 0.87567 1.90620 1.50341 1.67068 1.32975 1.22884 0.97583 0.98141 0.96426 1.21801 0.95841 0.75874 1.03314 1.92636 1.95799 1.33295 1.96959 1.22795 1.03494 0.90844 0.97258 1.22902 1.00753 0.97352 0.96993 1.22929 0.98299 0.97735 0.96706 1.22700 0.95033 0.98463 1.02404 1.22915 1.02275 1.04794 0.91593 1.23316 1.02167 0.95945 1.00518 0.91646 0.79717 0.89381 0.93767 0.82690 0.89492 0.94867 0.75627 0.89320 0.89212 0.90446 0.88057 0.90628 0.89659 0.89226 0.90340 0.87214 0.88948 0.89364 0.89513 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 2 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 3 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.19 5.09 -10.96 -0.06 -14.25 16 10 C 0.45 10.35 7.82 -10.98 -0.09 10.27 16 11 O -0.56 -15.28 15.78 5.55 0.09 -15.19 16 12 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 13 N -0.67 -10.56 6.12 -115.05 -0.70 -11.27 16 14 C 0.05 0.64 5.28 -3.83 -0.02 0.62 16 15 C 0.18 2.06 2.74 -67.94 -0.19 1.87 16 16 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 17 N -0.71 -8.13 2.60 -53.81 -0.14 -8.27 16 18 C 0.54 6.44 5.76 -10.98 -0.06 6.38 16 19 O -0.53 -7.89 12.93 5.56 0.07 -7.82 16 20 C -0.15 -1.33 1.16 -154.85 -0.18 -1.51 16 21 C 0.09 0.80 6.86 37.16 0.26 1.06 16 22 F -0.21 -2.41 14.46 2.25 0.03 -2.38 16 23 C -0.11 -0.86 6.99 -25.92 -0.18 -1.04 16 24 C -0.14 -0.85 7.73 -25.90 -0.20 -1.05 16 25 C -0.12 -0.84 7.19 -25.90 -0.19 -1.02 16 26 C -0.17 -1.65 5.71 -90.62 -0.52 -2.17 16 27 C -0.18 -1.65 9.73 -26.74 -0.26 -1.91 16 28 C -0.18 -1.90 9.82 -26.74 -0.26 -2.16 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.35 5.91 7.28 -39.29 -0.29 5.63 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.40 4.43 5.62 -40.82 -0.23 4.20 16 37 H 0.09 0.59 7.34 -51.93 -0.38 0.20 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.10 0.95 7.44 -51.93 -0.39 0.56 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.42 7.65 -51.93 -0.40 0.02 16 43 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 45 H 0.11 0.96 8.11 -51.92 -0.42 0.54 16 46 H 0.09 0.87 6.67 -51.93 -0.35 0.52 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.12 1.47 5.02 -51.93 -0.26 1.21 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -34.03 391.62 -8.45 -42.48 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -7.54 Total: 18.90 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.17 Total: 2.31 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.12 Total: -58.93 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.16 Total: -23.01 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.03 -8.45 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716621493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.343 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds