Wall clock time and date at job start Sat Apr 11 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47156 * 269.99472 * 3 2 1 5 5 H 1.48498 * 109.46819 * 29.99621 * 3 2 1 6 6 H 1.48498 * 109.47008 * 149.99628 * 3 2 1 7 7 C 1.38953 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99397 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00544 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99876 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99908 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47289 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.47486 * 295.00249 * 15 14 13 17 17 N 1.46503 * 109.46769 * 55.00228 * 15 14 13 18 18 C 1.34784 * 119.99794 * 204.99827 * 17 15 14 19 19 O 1.21281 * 119.99969 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99831 * 179.97438 * 18 17 15 21 21 C 1.53006 * 112.90818 * 311.25235 * 20 18 17 22 22 F 1.39901 * 109.46987 * 48.75019 * 21 20 18 23 23 C 1.53779 * 113.61123 * 180.02562 * 20 18 17 24 24 C 1.53787 * 87.07963 * 220.01652 * 23 20 18 25 25 C 1.53779 * 113.61419 * 82.50381 * 20 18 17 26 26 C 1.52994 * 109.47317 * 174.99811 * 15 14 13 27 27 C 1.52996 * 117.50219 * 248.62258 * 26 15 14 28 28 C 1.52990 * 60.00328 * 252.50885 * 27 26 15 29 29 H 0.97003 * 119.99634 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00457 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46926 * 60.00222 * 12 10 9 32 32 H 1.09003 * 109.46767 * 300.00329 * 12 10 9 33 33 H 1.00899 * 111.00204 * 56.04894 * 13 12 10 34 34 H 1.09003 * 109.46862 * 59.99842 * 14 13 12 35 35 H 1.08999 * 109.46873 * 300.00517 * 14 13 12 36 36 H 0.96996 * 120.00366 * 24.99512 * 17 15 14 37 37 H 1.08997 * 109.46800 * 168.75297 * 21 20 18 38 38 H 1.08999 * 109.46973 * 288.74953 * 21 20 18 39 39 H 1.08997 * 113.61646 * 105.47284 * 23 20 18 40 40 H 1.08998 * 113.69354 * 334.57592 * 23 20 18 41 41 H 1.09004 * 113.61202 * 139.98084 * 24 23 20 42 42 H 1.08994 * 113.61447 * 270.88515 * 24 23 20 43 43 H 1.09002 * 113.61557 * 25.43210 * 25 20 18 44 44 H 1.09004 * 113.61501 * 254.52631 * 25 20 18 45 45 H 1.09008 * 115.55202 * 34.33419 * 26 15 14 46 46 H 1.08997 * 117.50004 * 0.02562 * 27 26 15 47 47 H 1.09001 * 117.49882 * 145.02019 * 27 26 15 48 48 H 1.09003 * 117.50635 * 252.50854 * 28 27 26 49 49 H 1.09005 * 117.51694 * 107.48062 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0504 -3.7556 -0.0006 14 6 7.5189 -3.7948 -0.0012 15 6 7.9902 -5.2504 -0.0012 16 1 7.6893 -5.7297 0.9303 17 7 7.3864 -5.9591 -1.1324 18 6 7.2242 -7.2961 -1.0808 19 8 7.5776 -7.9124 -0.0979 20 6 6.6026 -8.0251 -2.2441 21 6 5.3053 -7.3753 -2.7297 22 9 5.5060 -6.0007 -2.8956 23 6 6.4877 -9.5435 -2.0292 24 6 6.8968 -9.7037 -3.5029 25 6 7.5954 -8.3392 -3.3758 26 6 9.5143 -5.2929 -0.1276 27 6 10.1002 -5.8410 -1.4304 28 6 10.1836 -6.6687 -0.1464 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 -0.0004 31 1 5.9241 -1.8568 0.8901 32 1 5.9240 -1.8567 -0.8900 33 1 5.6749 -4.2716 -0.7822 34 1 7.8961 -3.2911 0.8888 35 1 7.8954 -3.2905 -0.8912 36 1 7.1034 -5.4662 -1.9183 37 1 5.0118 -7.8173 -3.6818 38 1 4.5183 -7.5414 -1.9941 39 1 5.4722 -9.8791 -1.8190 40 1 7.2194 -9.9431 -1.3270 41 1 7.5840 -10.5317 -3.6777 42 1 6.0533 -9.6995 -4.1931 43 1 8.6307 -8.4081 -3.0418 44 1 7.4738 -7.7029 -4.2524 45 1 10.0496 -4.4795 0.3623 46 1 9.3998 -6.1709 -2.1976 47 1 11.0210 -5.3881 -1.7979 48 1 11.1592 -6.7604 0.3309 49 1 9.5380 -7.5435 -0.0683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716621493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:03 Heat of formation + Delta-G solvation = -89.513554 kcal Electronic energy + Delta-G solvation = -31116.423968 eV Core-core repulsion = 26800.693894 eV Total energy + Delta-G solvation = -4315.730074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.84656 -41.71869 -40.32831 -39.63581 -37.89778 -36.76425 -35.90340 -34.55277 -33.73622 -31.14143 -29.64680 -28.08221 -26.68750 -25.91297 -25.44007 -23.44476 -23.06596 -22.43250 -21.31321 -20.95431 -20.36758 -19.85823 -18.50335 -17.80160 -17.48713 -17.43186 -17.00361 -16.85980 -16.62979 -16.47450 -16.35609 -15.70436 -15.65905 -15.24757 -15.15410 -14.96518 -14.92980 -14.48678 -14.30829 -13.94155 -13.46683 -13.45787 -13.17918 -13.08259 -13.00765 -12.84907 -12.72379 -12.68338 -12.41386 -12.25467 -12.21913 -12.00063 -11.97813 -11.50926 -11.37868 -11.35618 -11.28032 -10.90916 -10.57813 -10.43864 -10.24674 -9.98483 -9.34392 -8.41117 -6.02047 1.30831 1.35965 1.45202 1.54602 1.96081 2.18214 2.23529 2.66345 2.94647 3.15450 3.21544 3.31453 3.34913 3.46752 3.73563 3.80582 3.83323 3.97425 4.06003 4.09368 4.15172 4.23513 4.30117 4.32045 4.40189 4.45570 4.47465 4.59475 4.67308 4.72660 4.73945 4.81333 4.83306 4.97148 5.00293 5.02932 5.08265 5.10741 5.23667 5.36219 5.41458 5.52397 5.56181 5.88666 6.01946 6.32655 6.53480 6.60065 6.88326 7.24225 7.39892 7.96934 8.76687 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.002795 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.556059 B =10014.681772 C =11289.075655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.447 3.553 11 O -0.614 6.614 12 C 0.061 3.939 13 N -0.690 5.690 14 C 0.060 3.940 15 C 0.177 3.823 16 H 0.066 0.934 17 N -0.710 5.710 18 C 0.527 3.473 19 O -0.568 6.568 20 C -0.150 4.150 21 C 0.082 3.918 22 F -0.220 7.220 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.164 4.164 27 C -0.164 4.164 28 C -0.195 4.195 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.343 0.657 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.407 0.593 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.130 0.870 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.234 -11.479 -9.543 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.498 6.498 12 C -0.071 4.071 13 N -0.324 5.324 14 C -0.069 4.069 15 C 0.072 3.928 16 H 0.085 0.915 17 N -0.364 5.364 18 C 0.314 3.686 19 O -0.448 6.448 20 C -0.153 4.153 21 C 0.028 3.972 22 F -0.201 7.201 23 C -0.150 4.150 24 C -0.165 4.165 25 C -0.149 4.149 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.232 4.232 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.148 0.852 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.116 0.884 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.826 -12.517 -8.172 28.127 hybrid contribution -0.433 1.423 -0.700 1.644 sum 23.393 -11.094 -8.872 27.368 Atomic orbital electron populations 1.69812 1.08188 1.29252 1.50363 1.26136 0.96477 1.02764 0.96040 0.85348 0.79490 0.76586 0.79984 1.17999 1.20124 1.15394 1.19001 0.81548 0.94885 1.50348 0.92837 1.42009 1.05769 1.07567 1.67840 1.21006 0.91056 0.83325 0.81120 1.90546 1.71404 1.32852 1.54997 1.21662 0.89577 0.91576 1.04284 1.60005 1.08125 1.12305 1.51924 1.22277 0.86385 0.94894 1.03296 1.20443 0.90680 0.91944 0.89763 0.91548 1.46366 1.61889 1.07354 1.20811 1.20604 0.77626 0.82430 0.87958 1.90605 1.51901 1.67750 1.34530 1.22964 0.98029 0.98131 0.96203 1.21980 0.95481 0.75160 1.04622 1.92600 1.95848 1.34619 1.97040 1.22806 1.03253 0.90139 0.98787 1.22888 1.01268 0.97002 0.95299 1.22922 0.97485 0.98519 0.95967 1.22685 0.93642 0.98693 1.03333 1.22958 1.02719 1.03539 0.90873 1.23243 1.02304 0.95423 1.02211 0.91150 0.77421 0.86530 0.90130 0.83724 0.87872 0.92429 0.75217 0.86033 0.90715 0.90176 0.89838 0.89580 0.87836 0.89720 0.88976 0.85228 0.89303 0.87439 0.88401 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.96 21.66 0.30 -56.44 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 3 Si 0.97 38.72 27.74 68.60 1.90 40.62 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.11 16 7 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 8 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 9 N -0.59 -27.95 5.09 -306.98 -1.56 -29.52 16 10 C 0.45 20.44 7.82 87.66 0.69 21.13 16 11 O -0.61 -34.72 15.78 -3.05 -0.05 -34.77 16 12 C 0.06 1.86 6.17 85.56 0.53 2.39 16 13 N -0.69 -20.90 6.12 -517.91 -3.17 -24.06 16 14 C 0.06 1.26 5.28 86.30 0.46 1.72 16 15 C 0.18 4.03 2.74 44.99 0.12 4.15 16 16 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 17 N -0.71 -16.12 2.60 -442.54 -1.15 -17.27 16 18 C 0.53 13.15 5.76 87.66 0.51 13.65 16 19 O -0.57 -17.94 12.93 -3.03 -0.04 -17.98 16 20 C -0.15 -2.72 1.16 -52.40 -0.06 -2.78 16 21 C 0.08 1.50 6.86 71.98 0.49 2.00 16 22 F -0.22 -5.13 14.46 44.97 0.65 -4.48 16 23 C -0.11 -1.82 6.99 31.12 0.22 -1.60 16 24 C -0.13 -1.29 7.73 31.14 0.24 -1.05 16 25 C -0.11 -1.41 7.19 31.13 0.22 -1.18 16 26 C -0.16 -2.98 5.71 -10.80 -0.06 -3.04 16 27 C -0.16 -2.68 9.73 30.59 0.30 -2.38 16 28 C -0.19 -3.93 9.82 30.59 0.30 -3.63 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 31 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.34 11.43 7.28 -89.69 -0.65 10.78 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.41 8.68 5.62 -92.71 -0.52 8.16 16 37 H 0.12 1.40 7.34 -2.39 -0.02 1.38 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.08 1.67 7.44 -2.39 -0.02 1.65 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.71 7.65 -2.39 -0.02 0.69 16 43 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 44 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 45 H 0.13 1.85 8.11 -2.38 -0.02 1.83 16 46 H 0.09 1.52 6.67 -2.39 -0.02 1.51 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.09 2.39 5.02 -2.38 -0.01 2.37 16 Total: -1.00 -81.63 391.62 1.39 -80.24 By element: Atomic # 1 Polarization: 54.02 SS G_CDS: -0.77 Total: 53.25 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.27 Total: 10.40 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -5.58 Total: -127.29 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.09 Total: -52.74 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.65 Total: -4.48 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.62 kcal Total: -81.63 1.39 -80.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716621493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal (2) G-P(sol) polarization free energy of solvation -81.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds