Wall clock time and date at job start Sat Apr 11 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47131 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.46897 * 29.99830 * 3 2 1 6 6 H 1.48489 * 109.47143 * 150.00080 * 3 2 1 7 7 C 1.38810 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00232 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00006 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46952 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61566 * 174.99850 * 11 10 9 13 13 C 1.53782 * 87.08284 * 139.98219 * 12 11 10 14 14 N 1.46504 * 113.61301 * 89.12000 * 13 12 11 15 15 C 1.34768 * 119.99864 * 156.53270 * 14 13 12 16 16 O 1.21594 * 120.00705 * 359.97438 * 15 14 13 17 17 C 1.47527 * 119.99770 * 179.97438 * 15 14 13 18 18 C 1.39796 * 120.06477 * 179.97438 * 17 15 14 19 19 C 1.37613 * 119.92738 * 179.97438 * 18 17 15 20 20 C 1.39219 * 120.06858 * 0.02562 * 19 18 17 21 21 N 1.39048 * 119.93424 * 180.02562 * 20 19 18 22 22 C 1.48220 * 111.00424 * 126.53693 * 21 20 19 23 23 C 1.51116 * 105.43901 * 144.85425 * 22 21 20 24 24 C 1.31121 * 109.37371 * 343.14412 * 23 22 21 25 25 C 1.48222 * 111.00038 * 240.18336 * 21 20 19 26 26 C 1.39220 * 120.13937 * 0.27148 * 20 19 18 27 27 C 1.37614 * 120.06420 * 359.45013 * 26 20 19 28 28 C 1.53778 * 87.17378 * 334.52768 * 13 12 11 29 29 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99815 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47334 * 60.00244 * 10 9 7 32 32 H 1.08994 * 109.47645 * 299.99990 * 10 9 7 33 33 H 1.09002 * 112.84965 * 43.80547 * 11 10 9 34 34 H 1.09005 * 113.61212 * 25.43704 * 12 11 10 35 35 H 1.09000 * 113.61972 * 254.53186 * 12 11 10 36 36 H 1.09000 * 113.61519 * 219.93498 * 13 12 11 37 37 H 0.97001 * 119.99919 * 336.52808 * 14 13 12 38 38 H 1.08001 * 120.04019 * 359.95946 * 18 17 15 39 39 H 1.07998 * 119.96510 * 180.02562 * 19 18 17 40 40 H 1.08997 * 110.27104 * 263.87251 * 22 21 20 41 41 H 1.09004 * 110.26523 * 25.84153 * 22 21 20 42 42 H 1.08010 * 125.27083 * 163.07430 * 23 22 21 43 43 H 1.07995 * 125.24863 * 179.97438 * 24 23 22 44 44 H 1.09005 * 110.26412 * 334.06419 * 25 21 20 45 45 H 1.08999 * 110.27578 * 96.02981 * 25 21 20 46 46 H 1.07995 * 119.96794 * 179.70541 * 26 20 19 47 47 H 1.08005 * 120.02995 * 180.29039 * 27 26 20 48 48 H 1.08997 * 113.61599 * 140.02235 * 28 13 12 49 49 H 1.09004 * 113.61668 * 270.92461 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.7303 -6.2001 -0.1227 13 6 0.7051 -6.6997 0.9090 14 7 -0.5386 -7.1906 0.3101 15 6 -1.3108 -8.0663 0.9833 16 8 -0.9752 -8.4492 2.0875 17 6 -2.5634 -8.5602 0.3805 18 6 -3.3653 -9.4689 1.0773 19 6 -4.5334 -9.9275 0.5126 20 6 -4.9166 -9.4877 -0.7515 21 7 -6.0977 -9.9524 -1.3193 22 6 -6.9625 -8.8258 -1.7434 23 6 -7.6495 -9.2983 -3.0037 24 6 -7.0102 -10.3374 -3.4842 25 6 -5.8319 -10.6595 -2.5945 26 6 -4.1171 -8.5875 -1.4506 27 6 -2.9507 -8.1209 -0.8888 28 6 0.6165 -5.2487 1.4105 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8895 32 1 2.6847 -3.7146 -0.8904 33 1 0.2375 -4.6704 -0.6949 34 1 2.7587 -6.2221 0.2379 35 1 1.6160 -6.6543 -1.1070 36 1 1.1235 -7.3900 1.6414 37 1 -0.8062 -6.8854 -0.5709 38 1 -3.0682 -9.8110 2.0577 39 1 -5.1535 -10.6292 1.0505 40 1 -7.6998 -8.6044 -0.9718 41 1 -6.3577 -7.9431 -1.9514 42 1 -8.5305 -8.8502 -3.4394 43 1 -7.2828 -10.8781 -4.3784 44 1 -4.9085 -10.2937 -3.0437 45 1 -5.7682 -11.7343 -2.4243 46 1 -4.4146 -8.2518 -2.4330 47 1 -2.3333 -7.4190 -1.4297 48 1 -0.3964 -4.9351 1.6631 49 1 1.3409 -5.0109 2.1895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717390286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:10 Heat of formation + Delta-G solvation = 68.996534 kcal Electronic energy + Delta-G solvation = -28078.732733 eV Core-core repulsion = 24200.645397 eV Total energy + Delta-G solvation = -3878.087336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12697 -40.25751 -38.75269 -37.61262 -34.58135 -33.61456 -32.96897 -31.38772 -30.82059 -29.23960 -28.91592 -26.80926 -25.51326 -24.54250 -23.32554 -23.12467 -22.03293 -21.39490 -20.55132 -19.89388 -19.13823 -18.32539 -17.46781 -17.04839 -16.58966 -15.83416 -15.31143 -15.12980 -15.03089 -14.87111 -14.60426 -14.22930 -14.16860 -13.94560 -13.69008 -13.46090 -13.38751 -13.28744 -12.81414 -12.78925 -12.54142 -12.38109 -12.24484 -12.12223 -11.80609 -11.67268 -11.60324 -11.03795 -10.83044 -10.50312 -10.35742 -10.17932 -10.09022 -10.03903 -9.83500 -9.61253 -9.39905 -9.17605 -8.95007 -8.86916 -8.83209 -6.89864 -5.75684 -3.03844 0.40363 0.99176 1.64412 2.58448 2.99903 3.34484 3.43720 3.48787 3.50679 3.51481 4.14900 4.32658 4.40021 4.45261 4.55929 4.58231 4.68143 4.81917 4.84106 4.93727 4.97072 5.00831 5.08052 5.11058 5.13418 5.18254 5.21066 5.43103 5.58154 5.59056 5.68733 5.77198 5.84740 5.85313 5.89966 5.93190 5.94911 5.99313 6.03500 6.10536 6.23500 6.29338 6.30396 6.33548 6.42341 6.62491 6.78377 6.85607 6.93409 7.39678 7.70631 8.09130 8.43640 9.54523 10.13764 10.48095 11.47321 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.001971 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.927133 B =14201.284182 C =15751.013611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.138 4.138 13 C 0.116 3.884 14 N -0.704 5.704 15 C 0.560 3.440 16 O -0.537 6.537 17 C -0.134 4.134 18 C -0.051 4.051 19 C -0.100 4.100 20 C 0.099 3.901 21 N -0.472 5.472 22 C 0.051 3.949 23 C -0.166 4.166 24 C -0.169 4.169 25 C 0.055 3.945 26 C -0.158 4.158 27 C -0.073 4.073 28 C -0.138 4.138 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.400 0.600 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 -25.085 -6.050 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.011 3.989 14 N -0.354 5.354 15 C 0.347 3.653 16 O -0.415 6.415 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.119 4.119 20 C 0.005 3.995 21 N -0.193 5.193 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.188 4.188 25 C -0.071 4.071 26 C -0.178 4.178 27 C -0.092 4.092 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.236 0.764 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.641 -25.583 -4.823 28.940 hybrid contribution 0.306 1.808 -1.183 2.182 sum -12.336 -23.775 -6.006 27.450 Atomic orbital electron populations 1.69665 1.05106 1.25582 1.57975 1.24747 0.95542 0.97708 1.03183 0.86183 0.78655 0.83856 0.77480 1.21765 1.21785 1.20775 1.19249 0.91031 0.84269 1.42392 0.91228 1.42348 1.05830 0.99999 1.89401 1.20638 0.93006 0.85206 0.97691 1.22810 0.99069 0.94236 0.97090 1.23312 0.98931 0.96570 0.98797 1.21968 0.84211 0.96102 0.96667 1.45612 1.23330 1.45306 1.21193 1.18158 0.83384 0.78637 0.85077 1.90782 1.72705 1.58409 1.19610 1.20040 0.96563 1.01225 0.95841 1.21258 0.92440 0.93634 0.99745 1.20969 0.96418 1.00447 0.94059 1.19189 0.90633 0.95158 0.94556 1.63113 1.12066 1.20933 1.23232 1.22270 0.96292 0.92874 0.96017 1.23638 1.00038 0.97790 0.96939 1.23612 0.96661 0.98483 1.00016 1.22224 0.96960 1.00690 0.87209 1.21563 0.95886 0.99606 1.00780 1.21192 0.96090 0.97927 0.94017 1.23461 1.02550 0.94020 0.97663 0.93569 0.78353 0.96169 0.96408 0.89515 0.88581 0.91278 0.88198 0.76417 0.84064 0.84479 0.88960 0.91364 0.84269 0.84348 0.91635 0.89069 0.85458 0.85328 0.91271 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.62 5.60 -59.91 -0.34 -18.95 16 10 C 0.16 3.21 6.10 -4.05 -0.02 3.19 16 11 C -0.11 -1.74 3.65 -89.66 -0.33 -2.07 16 12 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 13 C 0.12 1.47 4.30 -67.12 -0.29 1.18 16 14 N -0.70 -8.23 5.21 -54.06 -0.28 -8.51 16 15 C 0.56 7.37 7.76 -12.48 -0.10 7.28 16 16 O -0.54 -8.86 15.95 5.28 0.08 -8.77 16 17 C -0.13 -1.46 5.88 -104.95 -0.62 -2.07 16 18 C -0.05 -0.52 9.58 -39.23 -0.38 -0.90 16 19 C -0.10 -0.90 9.95 -39.45 -0.39 -1.29 16 20 C 0.10 0.88 4.90 -83.86 -0.41 0.47 16 21 N -0.47 -3.86 5.56 -171.17 -0.95 -4.81 16 22 C 0.05 0.37 6.42 -4.04 -0.03 0.34 16 23 C -0.17 -0.99 10.96 -35.85 -0.39 -1.38 16 24 C -0.17 -0.98 10.95 -35.85 -0.39 -1.37 16 25 C 0.05 0.37 6.46 -4.04 -0.03 0.34 16 26 C -0.16 -1.33 7.64 -39.44 -0.30 -1.63 16 27 C -0.07 -0.65 9.53 -39.23 -0.37 -1.03 16 28 C -0.14 -2.07 7.45 -25.78 -0.19 -2.27 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.93 16 31 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.34 7.50 -51.93 -0.39 0.95 16 37 H 0.40 3.83 6.72 -40.82 -0.27 3.56 16 38 H 0.14 1.42 7.64 -52.49 -0.40 1.02 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.49 6.29 -51.93 -0.33 0.17 16 42 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.07 0.44 6.72 -51.93 -0.35 0.09 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.13 0.90 7.01 -52.49 -0.37 0.53 16 47 H 0.13 0.93 6.39 -52.48 -0.34 0.59 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -33.73 399.61 -11.78 -45.52 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.35 Total: 10.19 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.68 Total: -10.48 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.84 Total: -60.05 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.73 -11.78 -45.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717390286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.514 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds