Wall clock time and date at job start Sat Apr 11 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47131 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.46897 * 29.99830 * 3 2 1 6 6 H 1.48489 * 109.47143 * 150.00080 * 3 2 1 7 7 C 1.38810 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00232 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00006 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46952 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61566 * 174.99850 * 11 10 9 13 13 C 1.53782 * 87.08284 * 139.98219 * 12 11 10 14 14 N 1.46504 * 113.61301 * 89.12000 * 13 12 11 15 15 C 1.34768 * 119.99864 * 156.53270 * 14 13 12 16 16 O 1.21594 * 120.00705 * 359.97438 * 15 14 13 17 17 C 1.47527 * 119.99770 * 179.97438 * 15 14 13 18 18 C 1.39796 * 120.06477 * 179.97438 * 17 15 14 19 19 C 1.37613 * 119.92738 * 179.97438 * 18 17 15 20 20 C 1.39219 * 120.06858 * 0.02562 * 19 18 17 21 21 N 1.39048 * 119.93424 * 180.02562 * 20 19 18 22 22 C 1.48220 * 111.00424 * 126.53693 * 21 20 19 23 23 C 1.51116 * 105.43901 * 144.85425 * 22 21 20 24 24 C 1.31121 * 109.37371 * 343.14412 * 23 22 21 25 25 C 1.48222 * 111.00038 * 240.18336 * 21 20 19 26 26 C 1.39220 * 120.13937 * 0.27148 * 20 19 18 27 27 C 1.37614 * 120.06420 * 359.45013 * 26 20 19 28 28 C 1.53778 * 87.17378 * 334.52768 * 13 12 11 29 29 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99815 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47334 * 60.00244 * 10 9 7 32 32 H 1.08994 * 109.47645 * 299.99990 * 10 9 7 33 33 H 1.09002 * 112.84965 * 43.80547 * 11 10 9 34 34 H 1.09005 * 113.61212 * 25.43704 * 12 11 10 35 35 H 1.09000 * 113.61972 * 254.53186 * 12 11 10 36 36 H 1.09000 * 113.61519 * 219.93498 * 13 12 11 37 37 H 0.97001 * 119.99919 * 336.52808 * 14 13 12 38 38 H 1.08001 * 120.04019 * 359.95946 * 18 17 15 39 39 H 1.07998 * 119.96510 * 180.02562 * 19 18 17 40 40 H 1.08997 * 110.27104 * 263.87251 * 22 21 20 41 41 H 1.09004 * 110.26523 * 25.84153 * 22 21 20 42 42 H 1.08010 * 125.27083 * 163.07430 * 23 22 21 43 43 H 1.07995 * 125.24863 * 179.97438 * 24 23 22 44 44 H 1.09005 * 110.26412 * 334.06419 * 25 21 20 45 45 H 1.08999 * 110.27578 * 96.02981 * 25 21 20 46 46 H 1.07995 * 119.96794 * 179.70541 * 26 20 19 47 47 H 1.08005 * 120.02995 * 180.29039 * 27 26 20 48 48 H 1.08997 * 113.61599 * 140.02235 * 28 13 12 49 49 H 1.09004 * 113.61668 * 270.92461 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.7303 -6.2001 -0.1227 13 6 0.7051 -6.6997 0.9090 14 7 -0.5386 -7.1906 0.3101 15 6 -1.3108 -8.0663 0.9833 16 8 -0.9752 -8.4492 2.0875 17 6 -2.5634 -8.5602 0.3805 18 6 -3.3653 -9.4689 1.0773 19 6 -4.5334 -9.9275 0.5126 20 6 -4.9166 -9.4877 -0.7515 21 7 -6.0977 -9.9524 -1.3193 22 6 -6.9625 -8.8258 -1.7434 23 6 -7.6495 -9.2983 -3.0037 24 6 -7.0102 -10.3374 -3.4842 25 6 -5.8319 -10.6595 -2.5945 26 6 -4.1171 -8.5875 -1.4506 27 6 -2.9507 -8.1209 -0.8888 28 6 0.6165 -5.2487 1.4105 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8895 32 1 2.6847 -3.7146 -0.8904 33 1 0.2375 -4.6704 -0.6949 34 1 2.7587 -6.2221 0.2379 35 1 1.6160 -6.6543 -1.1070 36 1 1.1235 -7.3900 1.6414 37 1 -0.8062 -6.8854 -0.5709 38 1 -3.0682 -9.8110 2.0577 39 1 -5.1535 -10.6292 1.0505 40 1 -7.6998 -8.6044 -0.9718 41 1 -6.3577 -7.9431 -1.9514 42 1 -8.5305 -8.8502 -3.4394 43 1 -7.2828 -10.8781 -4.3784 44 1 -4.9085 -10.2937 -3.0437 45 1 -5.7682 -11.7343 -2.4243 46 1 -4.4146 -8.2518 -2.4330 47 1 -2.3333 -7.4190 -1.4297 48 1 -0.3964 -4.9351 1.6631 49 1 1.3409 -5.0109 2.1895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717390286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:09 Heat of formation + Delta-G solvation = 47.533288 kcal Electronic energy + Delta-G solvation = -28079.663449 eV Core-core repulsion = 24200.645397 eV Total energy + Delta-G solvation = -3879.018052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84973 -41.18846 -39.74866 -38.47458 -36.35688 -34.71450 -33.82034 -32.81376 -32.02692 -30.01516 -29.42004 -28.41559 -26.64230 -25.61409 -24.81104 -23.84675 -23.11861 -22.58730 -21.36577 -20.36169 -20.33696 -19.15732 -19.06845 -18.13927 -17.42643 -16.83775 -16.57866 -16.17754 -16.11215 -15.81224 -15.71599 -15.53196 -15.19421 -15.05454 -14.77939 -14.50565 -14.41033 -14.18734 -13.94807 -13.71402 -13.40121 -13.31680 -13.16152 -13.11583 -12.97885 -12.86192 -12.69540 -12.34664 -12.25714 -12.18642 -11.93453 -11.76136 -11.37258 -11.17716 -11.11732 -10.85905 -10.65518 -10.17185 -10.10723 -9.74892 -9.40437 -8.97937 -7.95487 -5.23645 -0.37575 0.28807 1.21572 1.46560 1.48354 1.56841 1.68234 2.04038 2.55771 2.70319 2.75975 3.37452 3.54600 3.58053 3.62210 3.67547 3.77207 3.84107 3.89202 3.93212 3.94528 4.19450 4.28301 4.32882 4.45232 4.49892 4.51841 4.52683 4.55388 4.67690 4.74600 4.84460 4.87115 4.89065 4.92547 4.97275 4.98248 5.05891 5.14178 5.22926 5.25988 5.30090 5.35570 5.37822 5.43213 5.48923 5.60424 5.66016 5.87293 6.21465 6.27493 6.45117 7.10988 7.33308 8.11521 8.33615 9.28162 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.001971 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.927133 B =14201.284182 C =15751.013611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.125 3.875 14 N -0.695 5.695 15 C 0.559 3.441 16 O -0.578 6.578 17 C -0.152 4.152 18 C -0.058 4.058 19 C -0.104 4.104 20 C 0.102 3.898 21 N -0.484 5.484 22 C 0.046 3.954 23 C -0.171 4.171 24 C -0.169 4.169 25 C 0.050 3.950 26 C -0.157 4.157 27 C -0.068 4.068 28 C -0.144 4.144 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.049 0.951 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 -25.901 -7.804 29.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.129 4.129 12 C -0.153 4.153 13 C 0.019 3.981 14 N -0.346 5.346 15 C 0.348 3.652 16 O -0.459 6.459 17 C -0.155 4.155 18 C -0.077 4.077 19 C -0.122 4.122 20 C 0.007 3.993 21 N -0.205 5.205 22 C -0.079 4.079 23 C -0.190 4.190 24 C -0.187 4.187 25 C -0.075 4.075 26 C -0.177 4.177 27 C -0.087 4.087 28 C -0.182 4.182 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.250 0.750 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.174 0.826 43 H 0.176 0.824 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.068 0.932 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.422 -26.424 -6.610 29.937 hybrid contribution 0.213 1.994 -0.635 2.104 sum -12.209 -24.430 -7.245 28.255 Atomic orbital electron populations 1.69822 1.06608 1.26012 1.59705 1.25589 0.96445 1.01180 1.03892 0.85129 0.77665 0.79429 0.77494 1.21231 1.22284 1.19488 1.19670 0.91530 0.85527 1.40921 0.90675 1.42583 1.05584 1.01286 1.89300 1.20834 0.93780 0.84509 0.97572 1.22735 0.98540 0.94367 0.97292 1.23226 0.98950 0.93313 0.99809 1.21810 0.84876 0.94446 0.96949 1.45539 1.22837 1.44703 1.21514 1.18520 0.83883 0.78246 0.84571 1.90755 1.73770 1.59970 1.21390 1.19950 0.96095 1.02495 0.96940 1.21282 0.92938 0.93841 0.99682 1.21073 0.96113 1.00653 0.94383 1.19345 0.90812 0.94705 0.94396 1.63127 1.11805 1.21431 1.24187 1.22328 0.96230 0.92627 0.96759 1.23782 1.00696 0.98072 0.96418 1.23797 0.96005 0.98481 1.00398 1.22306 0.97657 1.00729 0.86827 1.21732 0.95435 0.99200 1.01345 1.21362 0.96401 0.97753 0.93207 1.23475 1.01265 0.95985 0.97509 0.94062 0.79581 0.96184 0.95884 0.89598 0.87326 0.88819 0.88595 0.75017 0.84691 0.83441 0.89197 0.91510 0.82596 0.82390 0.91438 0.88778 0.83863 0.83509 0.93201 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.00 5.60 -343.46 -1.92 -39.92 16 10 C 0.16 6.17 6.10 86.38 0.53 6.70 16 11 C -0.11 -3.27 3.65 -10.17 -0.04 -3.31 16 12 C -0.11 -2.45 7.38 31.12 0.23 -2.22 16 13 C 0.12 3.04 4.30 45.52 0.20 3.24 16 14 N -0.69 -15.55 5.21 -443.21 -2.31 -17.86 16 15 C 0.56 14.68 7.76 86.69 0.67 15.35 16 16 O -0.58 -19.49 15.95 -4.01 -0.06 -19.55 16 17 C -0.15 -3.26 5.88 -20.08 -0.12 -3.38 16 18 C -0.06 -1.19 9.58 22.50 0.22 -0.97 16 19 C -0.10 -1.81 9.95 22.36 0.22 -1.59 16 20 C 0.10 1.69 4.90 38.47 0.19 1.88 16 21 N -0.48 -7.29 5.56 -695.47 -3.87 -11.16 16 22 C 0.05 0.61 6.42 85.43 0.55 1.15 16 23 C -0.17 -1.71 10.96 25.66 0.28 -1.43 16 24 C -0.17 -1.58 10.95 25.66 0.28 -1.30 16 25 C 0.05 0.59 6.46 85.44 0.55 1.14 16 26 C -0.16 -2.39 7.64 22.36 0.17 -2.22 16 27 C -0.07 -1.13 9.53 22.50 0.21 -0.91 16 28 C -0.14 -4.29 7.45 31.21 0.23 -4.06 16 29 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.37 20.25 7.67 -92.71 -0.71 19.54 16 31 H 0.02 0.79 7.85 -2.39 -0.02 0.77 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.11 2.12 8.10 -2.38 -0.02 2.10 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 2.50 7.50 -2.39 -0.02 2.48 16 37 H 0.41 7.15 6.72 -92.71 -0.62 6.53 16 38 H 0.14 2.86 7.64 -2.91 -0.02 2.84 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.88 6.29 -2.38 -0.02 0.86 16 42 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.07 0.77 6.72 -2.38 -0.02 0.75 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.14 1.71 7.01 -2.91 -0.02 1.69 16 47 H 0.15 1.80 6.39 -2.91 -0.02 1.78 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 2.65 7.90 -2.38 -0.02 2.64 16 Total: -1.00 -72.73 399.61 -0.53 -73.26 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.36 Total: 35.39 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.68 Total: -8.98 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -7.82 Total: -128.61 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.73 -0.53 -73.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717390286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.793 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds