Wall clock time and date at job start Sat Apr 11 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37790 * 120.11402 * 2 1 4 4 C 1.38781 * 120.67100 * 180.25188 * 3 2 1 5 5 C 1.36659 * 120.52692 * 359.43950 * 4 3 2 6 6 C 1.39597 * 119.76260 * 0.55616 * 5 4 3 7 7 C 1.46484 * 134.03220 * 179.75010 * 6 5 4 8 8 C 1.50703 * 126.50556 * 359.93616 * 7 6 5 9 9 C 1.50701 * 109.46923 * 85.02002 * 8 7 6 10 10 O 1.21289 * 120.00095 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00178 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00266 * 180.02562 * 11 9 8 13 13 C 1.53038 * 109.45974 * 275.02664 * 12 11 9 14 14 C 1.53187 * 109.31501 * 178.60057 * 13 12 11 15 15 N 1.46928 * 108.76489 * 54.65218 * 14 13 12 16 16 C 1.36937 * 120.63072 * 126.36549 * 15 14 13 17 17 H 1.07996 * 119.99830 * 331.85895 * 16 15 14 18 18 C 1.38808 * 120.00037 * 151.86285 * 16 15 14 19 19 N 1.31616 * 120.00100 * 343.06704 * 18 16 15 20 20 Si 1.86797 * 119.99873 * 163.06668 * 18 16 15 21 21 H 1.48499 * 109.47496 * 90.00132 * 20 18 16 22 22 H 1.48503 * 109.47147 * 210.00053 * 20 18 16 23 23 H 1.48506 * 109.47479 * 329.99497 * 20 18 16 24 24 C 1.46922 * 118.73836 * 306.38479 * 15 14 13 25 25 C 1.53036 * 109.46046 * 154.96858 * 12 11 9 26 26 C 1.34232 * 106.99832 * 179.97438 * 7 6 5 27 27 N 1.36838 * 109.93850 * 359.97438 * 26 7 6 28 28 H 0.97003 * 125.06383 * 179.97438 * 27 26 7 29 29 C 1.37690 * 109.87089 * 359.97438 * 27 26 7 30 30 H 1.09004 * 109.47013 * 89.99993 * 1 2 3 31 31 H 1.09000 * 109.47294 * 209.99719 * 1 2 3 32 32 H 1.09002 * 109.47372 * 329.99863 * 1 2 3 33 33 H 1.08007 * 119.66204 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.74099 * 179.70358 * 4 3 2 35 35 H 1.08005 * 120.12203 * 180.27568 * 5 4 3 36 36 H 1.08997 * 109.47388 * 205.02165 * 8 7 6 37 37 H 1.08996 * 109.46890 * 325.02497 * 8 7 6 38 38 H 0.97005 * 119.99813 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.45805 * 34.99598 * 12 11 9 40 40 H 1.09000 * 109.49611 * 298.56463 * 13 12 11 41 41 H 1.08999 * 109.49988 * 58.65843 * 13 12 11 42 42 H 1.08997 * 109.59634 * 294.86418 * 14 13 12 43 43 H 1.09000 * 109.70235 * 174.50386 * 14 13 12 44 44 H 0.96997 * 119.99915 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.59123 * 293.81898 * 24 15 14 46 46 H 1.09004 * 109.70764 * 173.46285 * 24 15 14 47 47 H 1.08997 * 109.50368 * 301.33941 * 25 12 11 48 48 H 1.09006 * 109.49680 * 61.43728 * 25 12 11 49 49 H 1.08002 * 125.03566 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5860 1.2054 -0.0052 5 6 4.2916 0.0351 0.0010 6 6 3.6116 -1.1841 0.0010 7 6 4.0354 -2.5863 0.0020 8 6 5.4543 -3.0940 0.0020 9 6 5.9692 -3.1460 1.4173 10 8 5.2541 -2.8049 2.3357 11 7 7.2242 -3.5716 1.6627 12 6 7.7245 -3.6227 3.0387 13 6 8.2694 -2.2485 3.4344 14 6 8.7596 -2.2963 4.8850 15 7 9.7295 -3.3916 5.0203 16 6 10.9740 -3.1609 5.5430 17 1 11.4296 -2.1868 5.4429 18 6 11.6499 -4.1789 6.2014 19 7 10.9947 -5.2415 6.6184 20 14 13.4894 -4.0409 6.4954 21 1 13.7337 -3.3732 7.7991 22 1 14.0910 -5.3985 6.5143 23 1 14.1063 -3.2414 5.4065 24 6 9.3390 -4.7390 4.5837 25 6 8.8420 -4.6637 3.1365 26 6 2.9201 -3.3333 0.0020 27 7 1.8166 -2.5242 0.0017 28 1 0.8977 -2.8350 0.0013 29 6 2.2048 -1.2032 0.0020 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6546 2.1252 -0.0004 34 1 4.1126 2.1483 -0.0100 35 1 5.3715 0.0533 0.0014 36 1 5.4826 -4.0935 -0.4319 37 1 6.0799 -2.4240 -0.5878 38 1 7.7960 -3.8448 0.9282 39 1 6.9117 -3.8983 3.7106 40 1 9.0986 -1.9833 2.7786 41 1 7.4792 -1.5034 3.3420 42 1 7.9147 -2.4721 5.5508 43 1 9.2374 -1.3511 5.1428 44 1 11.4670 -5.9527 7.0788 45 1 8.5414 -5.1141 5.2249 46 1 10.1983 -5.4073 4.6406 47 1 8.4596 -5.6379 2.8320 48 1 9.6659 -4.3755 2.4835 49 1 2.8971 -4.4130 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078112321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:04 Heat of formation + Delta-G solvation = 30.825222 kcal Electronic energy + Delta-G solvation = -29062.365412 eV Core-core repulsion = 25182.622844 eV Total energy + Delta-G solvation = -3879.742568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46700 -39.47951 -37.37776 -37.08525 -34.32343 -33.74920 -32.25185 -31.59185 -30.09548 -29.53805 -29.24542 -27.17779 -26.93541 -24.82257 -22.30368 -22.19072 -21.97588 -21.96422 -20.32971 -19.46349 -18.79742 -17.90399 -17.04674 -16.46028 -16.39537 -15.64616 -15.51904 -14.89185 -14.75609 -14.65726 -14.42370 -13.84843 -13.57148 -13.52422 -13.51510 -13.30064 -13.12910 -12.92843 -12.76395 -12.60597 -12.45309 -12.26515 -11.94144 -11.57263 -11.43864 -11.39457 -11.09872 -10.91760 -10.81208 -10.68861 -10.45388 -10.23713 -10.00550 -9.81885 -9.68155 -9.56128 -9.27360 -8.61399 -8.42416 -8.28220 -7.67273 -6.65492 -5.77661 -3.19504 1.02045 1.56721 2.49500 2.94721 2.99154 3.38275 3.45305 3.47696 3.58410 3.85436 4.51231 4.55890 4.59846 4.73642 4.88079 4.98351 5.08868 5.11183 5.18923 5.28370 5.37220 5.41194 5.44682 5.46345 5.49617 5.56327 5.64807 5.69305 5.78423 5.83083 5.93853 6.05493 6.12599 6.32959 6.40718 6.42386 6.52812 6.56858 6.59234 6.62937 6.64934 6.68712 6.84432 7.00912 7.03999 7.07609 7.34592 7.39095 7.63033 7.80416 7.87065 8.46759 8.57181 9.22948 9.86340 10.43694 11.31341 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.002092 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.672230 B =13381.679270 C =13906.023801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.144 4.144 5 C -0.070 4.070 6 C -0.086 4.086 7 C -0.148 4.148 8 C -0.066 4.066 9 C 0.507 3.493 10 O -0.531 6.531 11 N -0.729 5.729 12 C 0.152 3.848 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.174 3.826 25 C -0.146 4.146 26 C 0.061 3.939 27 N -0.594 5.594 28 H 0.413 0.587 29 C 0.099 3.901 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.394 0.606 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.693 5.543 -19.335 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.123 4.123 4 C -0.164 4.164 5 C -0.089 4.089 6 C -0.090 4.090 7 C -0.156 4.156 8 C -0.107 4.107 9 C 0.293 3.707 10 O -0.407 6.407 11 N -0.379 5.379 12 C 0.049 3.951 13 C -0.178 4.178 14 C 0.020 3.980 15 N -0.316 5.316 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.065 4.065 27 N -0.196 5.196 28 H 0.250 0.750 29 C -0.008 4.008 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.227 0.773 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.257 5.574 -18.548 27.312 hybrid contribution 0.848 -0.350 -0.075 0.920 sum -18.409 5.223 -18.623 26.702 Atomic orbital electron populations 1.20668 0.91520 1.02519 1.01870 1.18826 0.95166 0.90285 1.06098 1.20661 0.94157 0.96245 1.01250 1.20581 0.93967 0.97828 1.03977 1.20251 0.99488 0.90642 0.98522 1.18966 0.91774 0.93032 1.05276 1.19540 0.93271 0.91108 1.11639 1.19962 0.92975 1.02829 0.94938 1.20624 0.81693 0.77272 0.91142 1.90717 1.56751 1.47053 1.46210 1.46366 1.14210 1.67251 1.10101 1.20985 0.96357 0.96356 0.81438 1.22353 0.99492 0.96053 0.99923 1.20873 0.92454 0.92572 0.92058 1.44088 1.11979 1.03884 1.71613 1.19176 0.91624 0.98213 1.28994 0.91699 1.25053 0.98642 0.98342 0.97732 1.70026 1.34221 1.09903 1.40682 0.86306 0.85567 0.76857 0.78096 1.21406 1.21591 1.20510 1.20732 0.99183 0.87944 0.87372 1.22525 0.96751 0.96559 1.02758 1.21513 0.85112 0.96097 1.03782 1.41614 1.08304 1.04090 1.65626 0.75008 1.18001 0.93591 0.84535 1.04674 0.91543 0.92534 0.91236 0.86020 0.86136 0.86363 0.88484 0.88463 0.77253 0.90272 0.92416 0.92786 0.96278 0.92631 0.93637 0.96213 0.89090 0.92838 0.92220 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.02 36.00 0.36 -0.42 16 2 C -0.10 -1.05 5.89 -104.47 -0.62 -1.67 16 3 C -0.10 -1.06 9.67 -39.54 -0.38 -1.44 16 4 C -0.14 -1.58 9.97 -39.95 -0.40 -1.97 16 5 C -0.07 -0.88 10.05 -39.65 -0.40 -1.28 16 6 C -0.09 -1.13 6.35 -105.14 -0.67 -1.80 16 7 C -0.15 -1.77 4.81 -102.71 -0.49 -2.26 16 8 C -0.07 -0.68 6.23 -29.03 -0.18 -0.87 16 9 C 0.51 7.35 7.79 -10.99 -0.09 7.26 16 10 O -0.53 -10.18 15.70 5.55 0.09 -10.10 16 11 N -0.73 -10.10 5.08 -53.77 -0.27 -10.37 16 12 C 0.15 2.69 2.42 -67.89 -0.16 2.52 16 13 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 14 C 0.15 3.26 6.52 -3.71 -0.02 3.23 16 15 N -0.59 -15.02 2.99 -172.32 -0.52 -15.53 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 20 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 25 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 26 C 0.06 0.61 11.73 -16.73 -0.20 0.41 16 27 N -0.59 -5.64 6.07 -10.65 -0.06 -5.70 16 28 H 0.41 2.61 8.87 -40.82 -0.36 2.25 16 29 C 0.10 1.17 6.95 -83.99 -0.58 0.58 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 7.99 -51.93 -0.42 -0.05 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 4.25 8.60 -40.82 -0.35 3.90 16 39 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -34.74 398.16 -11.27 -46.00 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.71 Total: 4.98 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -4.38 Total: -6.28 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.23 Total: -57.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.74 -11.27 -46.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078112321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.829 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds