Wall clock time and date at job start Sat Apr 11 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36659 * 120.11770 * 2 1 4 4 C 1.38787 * 120.52768 * 180.02562 * 3 2 1 5 5 C 1.37795 * 120.66558 * 359.97438 * 4 3 2 6 6 C 1.39081 * 119.77669 * 0.02562 * 5 4 3 7 7 N 1.37697 * 133.51384 * 179.97438 * 6 5 4 8 8 H 0.96998 * 125.05976 * 0.02562 * 7 6 5 9 9 C 1.36829 * 109.87721 * 180.02562 * 7 6 5 10 10 C 1.34241 * 109.93834 * 0.02562 * 9 7 6 11 11 C 1.50695 * 126.50325 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46914 * 257.99038 * 11 10 9 13 13 O 1.21283 * 120.00206 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00098 * 179.97438 * 12 11 10 15 15 C 1.47427 * 125.64607 * 0.02562 * 14 12 11 16 16 C 1.54909 * 104.83376 * 204.09275 * 15 14 12 17 17 C 1.55164 * 101.58095 * 322.99332 * 16 15 14 18 18 H 1.09004 * 110.71769 * 277.13629 * 17 16 15 19 19 N 1.46494 * 110.72124 * 154.04343 * 17 16 15 20 20 C 1.46509 * 119.99919 * 301.45112 * 19 17 16 21 21 C 1.36938 * 120.00214 * 121.45395 * 19 17 16 22 22 H 1.07997 * 120.00033 * 22.98519 * 21 19 17 23 23 C 1.38817 * 120.00115 * 202.98765 * 21 19 17 24 24 N 1.31621 * 119.99637 * 12.21940 * 23 21 19 25 25 Si 1.86798 * 119.99998 * 192.22180 * 23 21 19 26 26 H 1.48502 * 109.47120 * 89.99736 * 25 23 21 27 27 H 1.48502 * 109.47074 * 209.99850 * 25 23 21 28 28 H 1.48499 * 109.47017 * 329.99825 * 25 23 21 29 29 C 1.47019 * 125.64927 * 179.71968 * 14 12 11 30 30 C 1.39590 * 120.11571 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47494 * 96.00035 * 1 2 3 32 32 H 1.09000 * 109.47132 * 216.00403 * 1 2 3 33 33 H 1.09002 * 109.47135 * 336.00011 * 1 2 3 34 34 H 1.08004 * 119.73725 * 0.04037 * 3 2 1 35 35 H 1.08004 * 119.66974 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.10819 * 180.02562 * 5 4 3 37 37 H 1.07995 * 125.03264 * 179.73487 * 9 7 6 38 38 H 1.09003 * 109.47343 * 17.98858 * 11 10 9 39 39 H 1.09001 * 109.47652 * 137.99042 * 11 10 9 40 40 H 1.08999 * 110.36808 * 322.93013 * 15 14 12 41 41 H 1.09001 * 110.36289 * 85.14650 * 15 14 12 42 42 H 1.08995 * 111.00844 * 81.06357 * 16 15 14 43 43 H 1.08996 * 111.00495 * 204.88372 * 16 15 14 44 44 H 1.09005 * 109.46828 * 89.72062 * 20 19 17 45 45 H 1.08997 * 109.47144 * 209.71985 * 20 19 17 46 46 H 1.09002 * 109.46876 * 329.72243 * 20 19 17 47 47 H 0.97005 * 119.99536 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.88240 * 298.39083 * 29 14 12 49 49 H 1.08993 * 109.88729 * 59.55862 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1920 -0.0005 5 6 4.2918 0.0118 -0.0005 6 6 3.6144 -1.2029 -0.0006 7 7 4.0248 -2.5173 -0.0010 8 1 4.9487 -2.8125 -0.0011 9 6 2.9351 -3.3448 -0.0013 10 6 1.8073 -2.6167 -0.0017 11 6 0.3972 -3.1482 -0.0027 12 6 -0.1763 -3.0481 -1.3927 13 8 0.4942 -2.5908 -2.2939 14 7 -1.4340 -3.4679 -1.6346 15 6 -2.3550 -4.0422 -0.6369 16 6 -3.3490 -4.8981 -1.4610 17 6 -3.5207 -4.0331 -2.7376 18 1 -4.2591 -3.2478 -2.5749 19 7 -3.8972 -4.8668 -3.8819 20 6 -3.0257 -5.9654 -4.3060 21 6 -5.0637 -4.6192 -4.5551 22 1 -5.5141 -3.6386 -4.5124 23 6 -5.6673 -5.6288 -5.2923 24 7 -5.2637 -6.8742 -5.1564 25 14 -7.0523 -5.2197 -6.4771 26 1 -6.4856 -4.9206 -7.8167 27 1 -7.9760 -6.3782 -6.5778 28 1 -7.7965 -4.0352 -5.9787 29 6 -2.1170 -3.4230 -2.9358 30 6 2.2074 -1.2075 -0.0005 31 1 -0.3634 -0.1074 -1.0220 32 1 -0.3633 -0.8313 0.6041 33 1 -0.3633 0.9388 0.4180 34 1 1.6503 2.1161 0.0007 35 1 4.1085 2.1343 -0.0009 36 1 5.3716 0.0301 -0.0005 37 1 2.9762 -4.4240 -0.0058 38 1 0.4017 -4.1911 0.3143 39 1 -0.2126 -2.5621 0.6850 40 1 -1.8082 -4.6690 0.0676 41 1 -2.8831 -3.2492 -0.1074 42 1 -2.9201 -5.8705 -1.7028 43 1 -4.2967 -5.0113 -0.9347 44 1 -3.3059 -6.8764 -3.7770 45 1 -3.1333 -6.1209 -5.3794 46 1 -1.9896 -5.7164 -4.0769 47 1 -5.6852 -7.5796 -5.6719 48 1 -2.2038 -2.3903 -3.2734 49 1 -1.5602 -4.0087 -3.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972748585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:06 Heat of formation + Delta-G solvation = 52.594317 kcal Electronic energy + Delta-G solvation = -29651.941555 eV Core-core repulsion = 25773.142966 eV Total energy + Delta-G solvation = -3878.798589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.43679 -39.57932 -37.39045 -37.19163 -34.74454 -33.72645 -31.79285 -31.22576 -29.75164 -29.36926 -28.53012 -27.37039 -26.08566 -25.91522 -23.42931 -22.25579 -22.17162 -21.97142 -19.99022 -19.13603 -18.56988 -17.48520 -17.02407 -16.79153 -16.49858 -15.88403 -15.49677 -14.94347 -14.91410 -14.53216 -14.41255 -13.96009 -13.51635 -13.41200 -13.31588 -13.30365 -13.02087 -12.73863 -12.59184 -12.39869 -12.26664 -12.12592 -12.03740 -11.64453 -11.41203 -11.34728 -11.21629 -10.95689 -10.80972 -10.77867 -10.56399 -10.42365 -10.21632 -9.88212 -9.85760 -9.66328 -9.34603 -8.56259 -8.26615 -8.22272 -7.62103 -6.81013 -5.77607 -3.23149 1.06397 1.59264 2.52047 2.96368 3.02192 3.37325 3.39961 3.44438 3.45551 3.84343 4.46585 4.60957 4.67825 4.83283 4.87480 4.93416 5.05864 5.10367 5.15660 5.28375 5.32208 5.37682 5.40659 5.44668 5.58998 5.61112 5.63331 5.69862 5.74844 5.80161 5.86788 5.93870 6.02046 6.05119 6.13983 6.35119 6.41578 6.44271 6.57623 6.61006 6.62938 6.70188 6.75549 6.85559 6.90819 7.11479 7.36944 7.42669 7.67875 7.78333 7.90180 8.35758 8.53161 9.19149 9.81500 10.30512 11.28489 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002312 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.713980 B =12107.885685 C =12511.550708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.154 4.154 4 C -0.096 4.096 5 C -0.141 4.141 6 C 0.098 3.902 7 N -0.595 5.595 8 H 0.414 0.586 9 C 0.056 3.944 10 C -0.145 4.145 11 C -0.064 4.064 12 C 0.524 3.476 13 O -0.534 6.534 14 N -0.615 5.615 15 C 0.099 3.901 16 C -0.151 4.151 17 C 0.173 3.827 18 H 0.077 0.923 19 N -0.587 5.587 20 C 0.161 3.839 21 C -0.258 4.258 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.906 5.906 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.088 3.912 30 C -0.086 4.086 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.169 0.831 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.024 0.976 45 H 0.052 0.948 46 H -0.001 1.001 47 H 0.253 0.747 48 H 0.058 0.942 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.456 9.510 16.149 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.174 4.174 4 C -0.116 4.116 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.198 5.198 8 H 0.251 0.749 9 C -0.070 4.070 10 C -0.153 4.153 11 C -0.105 4.105 12 C 0.312 3.688 13 O -0.411 6.411 14 N -0.350 5.350 15 C -0.025 4.025 16 C -0.191 4.191 17 C 0.062 3.938 18 H 0.095 0.905 19 N -0.307 5.307 20 C 0.016 3.984 21 C -0.388 4.388 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.551 5.551 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.036 4.036 30 C -0.090 4.090 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.186 0.814 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.920 9.531 15.544 24.874 hybrid contribution -0.277 -0.212 -0.709 0.790 sum 16.643 9.319 14.835 24.164 Atomic orbital electron populations 1.20884 0.91436 1.02251 1.02785 1.19067 0.95629 0.91216 0.96877 1.20490 0.94078 0.97164 1.05632 1.20725 0.94014 0.96832 0.99986 1.19936 0.98877 0.89618 1.07715 1.18203 0.93647 0.85019 1.03990 1.41629 1.08351 1.04079 1.65747 0.74917 1.21515 0.85327 0.95900 1.04210 1.19550 0.93203 0.91158 1.11342 1.20040 0.92701 1.02544 0.95179 1.20214 0.80042 0.77943 0.90621 1.90709 1.58725 1.45095 1.46552 1.48550 1.12784 1.61999 1.11711 1.22360 0.91699 0.96700 0.91694 1.23357 0.98186 0.99637 0.97932 1.21295 0.92238 0.93053 0.87189 0.90470 1.43860 1.22011 1.34352 1.30485 1.20786 0.88269 0.89581 0.99742 1.19241 0.99807 0.95072 1.24669 0.91223 1.25026 0.98457 0.94923 1.01098 1.70078 1.43786 0.98733 1.42469 0.86218 0.81570 0.77232 0.81276 1.21449 1.21747 1.20433 1.22678 0.95460 1.00892 0.84610 1.18780 0.91660 0.92603 1.05969 0.90793 0.91532 0.91734 0.86247 0.86006 0.86593 0.81421 0.88566 0.88311 0.91429 0.91695 0.90680 0.90453 0.95790 0.92936 0.98240 0.93682 0.92342 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.34 36.01 0.34 -1.02 16 2 C -0.03 -0.35 5.87 -104.69 -0.61 -0.97 16 3 C -0.15 -1.75 9.60 -39.95 -0.38 -2.14 16 4 C -0.10 -0.99 10.01 -39.54 -0.40 -1.39 16 5 C -0.14 -1.49 10.08 -39.43 -0.40 -1.89 16 6 C 0.10 1.20 7.28 -83.99 -0.61 0.59 16 7 N -0.60 -5.84 6.07 -10.65 -0.06 -5.90 16 8 H 0.41 2.64 8.96 -40.82 -0.37 2.27 16 9 C 0.06 0.59 11.73 -16.73 -0.20 0.40 16 10 C -0.14 -1.83 4.81 -102.71 -0.49 -2.33 16 11 C -0.06 -0.75 4.45 -29.04 -0.13 -0.88 16 12 C 0.52 8.25 7.63 -10.98 -0.08 8.16 16 13 O -0.53 -10.66 16.36 5.55 0.09 -10.57 16 14 N -0.62 -9.61 3.33 -170.51 -0.57 -10.18 16 15 C 0.10 1.26 6.69 -2.53 -0.02 1.25 16 16 C -0.15 -2.46 6.65 -24.58 -0.16 -2.62 16 17 C 0.17 3.36 3.42 -66.09 -0.23 3.14 16 18 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 19 N -0.59 -14.25 2.94 -171.37 -0.50 -14.76 16 20 C 0.16 3.91 7.78 59.85 0.47 4.37 16 21 C -0.26 -6.91 9.61 -15.06 -0.14 -7.06 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 23 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 24 N -0.91 -25.90 10.70 55.49 0.59 -25.31 16 25 Si 0.91 21.55 29.57 -169.99 -5.03 16.53 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 C 0.09 1.63 6.44 -3.06 -0.02 1.61 16 30 C -0.09 -1.17 6.15 -105.14 -0.65 -1.81 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.71 5.54 -51.93 -0.29 0.42 16 33 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.12 1.11 8.05 -52.48 -0.42 0.69 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.10 0.88 7.84 -51.93 -0.41 0.48 16 39 H 0.10 0.99 5.99 -51.93 -0.31 0.68 16 40 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.62 7.58 -51.93 -0.39 0.22 16 45 H 0.05 1.40 6.95 -51.93 -0.36 1.04 16 46 H 0.00 -0.02 6.21 -51.93 -0.32 -0.34 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.49 6.07 -51.93 -0.32 1.17 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -33.87 389.68 -10.70 -44.57 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.29 Total: 2.32 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.81 Total: -2.57 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.54 Total: -56.15 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.87 -10.70 -44.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972748585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.169 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds