Wall clock time and date at job start Sat Apr 11 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36663 * 120.11544 * 2 1 4 4 C 1.38789 * 120.52894 * 180.02562 * 3 2 1 5 5 C 1.37796 * 120.66523 * 359.97438 * 4 3 2 6 6 C 1.39087 * 119.77755 * 0.02562 * 5 4 3 7 7 N 1.37691 * 133.51090 * 179.68706 * 6 5 4 8 8 H 0.96995 * 125.06327 * 359.95793 * 7 6 5 9 9 C 1.36836 * 109.87107 * 179.89096 * 7 6 5 10 10 C 1.34228 * 109.93827 * 0.40540 * 9 7 6 11 11 C 1.50708 * 126.50055 * 179.78850 * 10 9 7 12 12 C 1.50694 * 109.47087 * 258.15278 * 11 10 9 13 13 O 1.21277 * 120.00270 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99774 * 179.97438 * 12 11 10 15 15 C 1.47427 * 125.64867 * 359.69369 * 14 12 11 16 16 C 1.55124 * 104.72371 * 155.81274 * 15 14 12 17 17 C 1.55159 * 101.48725 * 37.29832 * 16 15 14 18 18 H 1.09000 * 110.72334 * 82.68813 * 17 16 15 19 19 N 1.46497 * 110.87646 * 205.89831 * 17 16 15 20 20 C 1.46506 * 119.99985 * 53.60463 * 19 17 16 21 21 C 1.36939 * 120.00114 * 233.60945 * 19 17 16 22 22 H 1.08002 * 119.99626 * 22.93182 * 21 19 17 23 23 C 1.38811 * 120.00126 * 202.93709 * 21 19 17 24 24 N 1.31616 * 119.99907 * 12.31326 * 23 21 19 25 25 Si 1.86793 * 119.99946 * 192.31332 * 23 21 19 26 26 H 1.48505 * 109.47283 * 90.00184 * 25 23 21 27 27 H 1.48498 * 109.47222 * 209.99637 * 25 23 21 28 28 H 1.48498 * 109.47508 * 329.99836 * 25 23 21 29 29 C 1.47025 * 125.64998 * 179.97438 * 14 12 11 30 30 C 1.39594 * 120.12185 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46578 * 96.01154 * 1 2 3 32 32 H 1.09004 * 109.46960 * 216.00955 * 1 2 3 33 33 H 1.08997 * 109.47013 * 336.01205 * 1 2 3 34 34 H 1.07997 * 119.73780 * 0.04585 * 3 2 1 35 35 H 1.07999 * 119.67276 * 179.97438 * 4 3 2 36 36 H 1.08000 * 120.10884 * 179.97438 * 5 4 3 37 37 H 1.07997 * 125.02896 * 180.16946 * 9 7 6 38 38 H 1.08995 * 109.46706 * 18.15305 * 11 10 9 39 39 H 1.08998 * 109.46799 * 138.14734 * 11 10 9 40 40 H 1.08994 * 110.36886 * 274.74657 * 15 14 12 41 41 H 1.09003 * 110.36603 * 37.06663 * 15 14 12 42 42 H 1.09003 * 111.19786 * 279.19136 * 16 15 14 43 43 H 1.09009 * 110.94126 * 155.29073 * 16 15 14 44 44 H 1.08995 * 109.46802 * 90.18246 * 20 19 17 45 45 H 1.08996 * 109.46894 * 210.18039 * 20 19 17 46 46 H 1.08995 * 109.47042 * 330.18415 * 20 19 17 47 47 H 0.97000 * 120.00136 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.87958 * 300.44272 * 29 14 12 49 49 H 1.09005 * 109.87774 * 61.61199 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1922 -0.0005 5 6 4.2919 0.0120 -0.0005 6 6 3.6145 -1.2028 -0.0006 7 7 4.0250 -2.5171 -0.0060 8 1 4.9489 -2.8122 -0.0118 9 6 2.9353 -3.3447 -0.0006 10 6 1.8076 -2.6167 -0.0005 11 6 0.3974 -3.1483 0.0001 12 6 -0.1759 -3.0532 -1.3902 13 8 0.4946 -2.5989 -2.2929 14 7 -1.4336 -3.4739 -1.6308 15 6 -2.3522 -4.0511 -0.6326 16 6 -3.7705 -3.7848 -1.2015 17 6 -3.5383 -3.9950 -2.7212 18 1 -3.5804 -5.0542 -2.9749 19 7 -4.5136 -3.2363 -3.5081 20 6 -4.6791 -1.7985 -3.2806 21 6 -5.2708 -3.8710 -4.4564 22 1 -5.4378 -4.9359 -4.3900 23 6 -5.8235 -3.1456 -5.5029 24 7 -5.4309 -1.9094 -5.7263 25 14 -7.1243 -3.9241 -6.5942 26 1 -8.4706 -3.6576 -6.0268 27 1 -7.0384 -3.3434 -7.9582 28 1 -6.8985 -5.3901 -6.6652 29 6 -2.1146 -3.4385 -2.9333 30 6 2.2075 -1.2074 -0.0005 31 1 -0.3632 -0.1076 -1.0220 32 1 -0.3633 -0.8313 0.6042 33 1 -0.3633 0.9389 0.4178 34 1 1.6503 2.1161 0.0008 35 1 4.1084 2.1344 -0.0009 36 1 5.3717 0.0303 -0.0014 37 1 2.9766 -4.4239 -0.0005 38 1 0.4021 -4.1900 0.3207 39 1 -0.2123 -2.5599 0.6857 40 1 -2.1768 -5.1220 -0.5302 41 1 -2.2298 -3.5523 0.3288 42 1 -4.0937 -2.7649 -0.9931 43 1 -4.4883 -4.5071 -0.8124 44 1 -4.0014 -1.2472 -3.9324 45 1 -5.7075 -1.5119 -3.5000 46 1 -4.4513 -1.5668 -2.2402 47 1 -5.8174 -1.4024 -6.4573 48 1 -2.1679 -2.4119 -3.2959 49 1 -1.5769 -4.0596 -3.6497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972748586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:10 Heat of formation + Delta-G solvation = 53.379976 kcal Electronic energy + Delta-G solvation = -29828.546458 eV Core-core repulsion = 25949.781938 eV Total energy + Delta-G solvation = -3878.764520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.39857 -39.53361 -37.36496 -37.14808 -34.72780 -33.68112 -31.77546 -31.20258 -29.69013 -29.32412 -28.51233 -27.34416 -26.06613 -25.87409 -23.36938 -22.32687 -22.13008 -21.92584 -19.93138 -19.12898 -18.52622 -17.44383 -17.02180 -16.75131 -16.46296 -15.76058 -15.41611 -15.13988 -14.81687 -14.55794 -14.31420 -13.95676 -13.45613 -13.39688 -13.31445 -13.20781 -12.92973 -12.75244 -12.52250 -12.41607 -12.11840 -12.04491 -12.00144 -11.74744 -11.47346 -11.35509 -11.16252 -10.90062 -10.81263 -10.73331 -10.53619 -10.40825 -10.25056 -9.87933 -9.80026 -9.61648 -9.29561 -8.55265 -8.22351 -8.17946 -7.57928 -6.80025 -5.76189 -3.22634 1.10999 1.64102 2.55277 3.01300 3.05092 3.37012 3.42370 3.45226 3.47550 3.89397 4.46962 4.65272 4.71114 4.86075 4.91035 4.98575 5.04662 5.10324 5.19734 5.30050 5.34639 5.40716 5.41293 5.48939 5.55784 5.65423 5.67336 5.75972 5.82775 5.83934 5.91150 5.93803 6.04181 6.07543 6.22082 6.37657 6.42117 6.46701 6.60137 6.62795 6.67046 6.74849 6.80095 6.88601 6.91553 7.16024 7.36912 7.45808 7.71079 7.79201 7.95317 8.36495 8.58654 9.19821 9.82179 10.31366 11.29309 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.002501 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.472343 B =11194.026555 C =11758.327163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.154 4.154 4 C -0.095 4.095 5 C -0.142 4.142 6 C 0.098 3.902 7 N -0.596 5.596 8 H 0.414 0.586 9 C 0.054 3.946 10 C -0.144 4.144 11 C -0.064 4.064 12 C 0.522 3.478 13 O -0.532 6.532 14 N -0.617 5.617 15 C 0.101 3.899 16 C -0.154 4.154 17 C 0.172 3.828 18 H 0.077 0.923 19 N -0.586 5.586 20 C 0.161 3.839 21 C -0.261 4.261 22 H 0.070 0.930 23 C 0.004 3.996 24 N -0.904 5.904 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.088 3.912 30 C -0.086 4.086 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.168 0.832 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.000 1.000 47 H 0.254 0.746 48 H 0.071 0.929 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.262 -0.601 17.691 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.026 4.026 3 C -0.173 4.173 4 C -0.115 4.115 5 C -0.163 4.163 6 C -0.008 4.008 7 N -0.198 5.198 8 H 0.250 0.750 9 C -0.071 4.071 10 C -0.152 4.152 11 C -0.105 4.105 12 C 0.310 3.690 13 O -0.409 6.409 14 N -0.352 5.352 15 C -0.022 4.022 16 C -0.193 4.193 17 C 0.062 3.938 18 H 0.095 0.905 19 N -0.306 5.306 20 C 0.017 3.983 21 C -0.390 4.390 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.548 5.548 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.036 4.036 30 C -0.091 4.091 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.185 0.815 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.019 0.981 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.720 -0.263 17.037 23.872 hybrid contribution -0.142 -0.523 -0.811 0.975 sum 16.578 -0.785 16.226 23.211 Atomic orbital electron populations 1.20891 0.91312 1.02246 1.02964 1.19093 0.95694 0.91211 0.96628 1.20506 0.94074 0.97229 1.05541 1.20731 0.94018 0.96837 0.99874 1.19928 0.98841 0.89616 1.07884 1.18197 0.93642 0.85004 1.04003 1.41613 1.08301 1.04083 1.65851 0.74968 1.21477 0.85347 0.95814 1.04502 1.19554 0.93192 0.91200 1.11206 1.20047 0.92716 1.02420 0.95297 1.20220 0.80172 0.77995 0.90596 1.90717 1.58742 1.44928 1.46485 1.48616 1.12820 1.61945 1.11821 1.22346 0.90175 0.97814 0.91898 1.23362 0.94224 1.02881 0.98879 1.21354 0.86712 0.95976 0.89769 0.90528 1.43915 1.40089 1.05379 1.41214 1.20788 1.00902 0.83369 0.93282 1.19233 1.24447 0.93317 1.02022 0.91197 1.25063 1.00567 0.96787 0.97073 1.70077 1.43321 1.09998 1.31412 0.86217 0.81657 0.78590 0.79810 1.21444 1.21738 1.20458 1.22866 0.94570 1.02543 0.83659 1.18780 0.91657 0.92610 1.06033 0.90614 0.91619 0.91665 0.86182 0.85992 0.86617 0.81507 0.88686 0.88337 0.91735 0.91412 0.90350 0.90540 0.95829 0.92951 0.98129 0.93604 0.91079 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.36 36.01 0.34 -1.18 16 2 C -0.03 -0.36 5.87 -104.69 -0.61 -0.97 16 3 C -0.15 -1.89 9.60 -39.95 -0.38 -2.27 16 4 C -0.10 -1.05 10.01 -39.54 -0.40 -1.45 16 5 C -0.14 -1.58 10.08 -39.43 -0.40 -1.98 16 6 C 0.10 1.24 7.28 -83.99 -0.61 0.63 16 7 N -0.60 -5.99 6.07 -10.65 -0.06 -6.06 16 8 H 0.41 2.71 8.96 -40.82 -0.37 2.35 16 9 C 0.05 0.58 11.73 -16.73 -0.20 0.38 16 10 C -0.14 -1.87 4.81 -102.71 -0.49 -2.36 16 11 C -0.06 -0.76 4.45 -29.03 -0.13 -0.89 16 12 C 0.52 8.51 7.65 -10.99 -0.08 8.42 16 13 O -0.53 -11.09 16.36 5.56 0.09 -11.00 16 14 N -0.62 -9.89 3.33 -170.38 -0.57 -10.46 16 15 C 0.10 1.26 6.70 -2.41 -0.02 1.24 16 16 C -0.15 -2.33 6.62 -24.47 -0.16 -2.50 16 17 C 0.17 3.36 3.43 -66.09 -0.23 3.13 16 18 H 0.08 1.48 7.93 -51.93 -0.41 1.06 16 19 N -0.59 -14.20 2.93 -171.39 -0.50 -14.70 16 20 C 0.16 3.90 7.92 59.85 0.47 4.37 16 21 C -0.26 -6.97 9.61 -15.06 -0.14 -7.12 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 24 N -0.90 -26.21 10.70 55.49 0.59 -25.62 16 25 Si 0.91 21.59 29.57 -169.99 -5.03 16.56 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 30 C -0.09 -1.23 6.15 -105.14 -0.65 -1.88 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.78 5.54 -51.93 -0.29 0.49 16 33 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 34 H 0.12 1.24 8.05 -52.49 -0.42 0.82 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.03 5.69 -51.93 -0.30 0.74 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.67 7.48 -51.93 -0.39 0.29 16 42 H 0.08 1.28 6.04 -51.93 -0.31 0.96 16 43 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.02 0.63 7.40 -51.93 -0.38 0.24 16 45 H 0.05 1.37 6.98 -51.93 -0.36 1.01 16 46 H 0.00 0.01 6.01 -51.93 -0.31 -0.30 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.07 1.63 7.01 -51.93 -0.36 1.26 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -34.39 389.27 -10.66 -45.05 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.25 Total: 3.02 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.80 Total: -2.68 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.54 Total: -56.83 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.39 -10.66 -45.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972748586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.434 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds