Wall clock time and date at job start Sat Apr 11 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47339 * 240.00621 * 3 2 1 5 5 H 1.48508 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47124 * 120.00214 * 3 2 1 7 7 C 1.38811 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 197.84335 * 7 2 1 9 9 N 1.36932 * 120.00331 * 17.84211 * 7 2 1 10 10 C 1.46839 * 120.38332 * 28.91110 * 9 7 2 11 11 C 1.53357 * 108.81421 * 123.07341 * 10 9 7 12 12 C 1.53188 * 108.76265 * 51.31382 * 11 10 9 13 13 C 1.52846 * 117.65384 * 90.02523 * 12 11 10 14 14 C 1.52816 * 117.71087 * 158.88140 * 12 11 10 15 15 H 1.09003 * 117.50564 * 359.86333 * 14 12 11 16 16 N 1.46500 * 117.50391 * 144.90441 * 14 12 11 17 17 C 1.34771 * 120.00091 * 205.00021 * 16 14 12 18 18 O 1.21276 * 120.00469 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99778 * 179.97438 * 17 16 14 20 20 H 1.09002 * 110.71727 * 59.30508 * 19 17 16 21 21 C 1.54415 * 110.80701 * 182.67517 * 19 17 16 22 22 C 1.51365 * 104.99855 * 144.24643 * 21 19 17 23 23 C 1.38626 * 131.43720 * 163.01559 * 22 21 19 24 24 C 1.38208 * 119.09583 * 180.22287 * 23 22 21 25 25 N 1.31886 * 120.71263 * 0.02562 * 24 23 22 26 26 C 1.31834 * 121.78480 * 359.94748 * 25 24 23 27 27 C 1.38336 * 120.75728 * 0.09207 * 26 25 24 28 28 C 1.51185 * 131.27197 * 179.97438 * 27 26 25 29 29 C 1.53178 * 115.08098 * 304.55514 * 12 11 10 30 30 C 1.46846 * 120.38056 * 208.88920 * 9 7 2 31 31 H 0.96999 * 120.00088 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58590 * 3.27228 * 10 9 7 33 33 H 1.09002 * 109.69043 * 242.93777 * 10 9 7 34 34 H 1.08994 * 109.58476 * 291.53456 * 11 10 9 35 35 H 1.08995 * 109.59068 * 171.09621 * 11 10 9 36 36 H 1.09000 * 117.50264 * 215.18195 * 13 12 11 37 37 H 1.08996 * 117.50416 * 0.23604 * 13 12 11 38 38 H 0.97000 * 119.99930 * 24.99661 * 16 14 12 39 39 H 1.08997 * 110.30782 * 263.29973 * 21 19 17 40 40 H 1.08995 * 110.31380 * 25.46794 * 21 19 17 41 41 H 1.08005 * 120.44875 * 0.24480 * 23 22 21 42 42 H 1.08007 * 119.64066 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.62033 * 180.02562 * 26 25 24 44 44 H 1.09003 * 110.29797 * 78.10074 * 28 27 26 45 45 H 1.09008 * 110.29581 * 315.96404 * 28 27 26 46 46 H 1.08993 * 109.58977 * 175.23141 * 29 12 11 47 47 H 1.09008 * 109.58724 * 295.65974 * 29 12 11 48 48 H 1.08997 * 109.58019 * 356.72176 * 30 9 7 49 49 H 1.09003 * 109.57688 * 116.98784 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0513 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3644 10 6 0.2557 -2.3251 -1.3143 11 6 0.5864 -3.2380 -2.5013 12 6 1.0070 -4.6101 -1.9655 13 6 -0.0871 -5.6574 -1.7603 14 6 0.9077 -5.8043 -2.9139 15 1 0.5399 -5.6167 -3.9227 16 7 1.9295 -6.8476 -2.7973 17 6 2.2182 -7.6294 -3.8565 18 8 1.6325 -7.4690 -4.9062 19 6 3.2698 -8.7022 -3.7367 20 1 3.0068 -9.4144 -2.9545 21 6 3.4755 -9.4219 -5.0873 22 6 4.9562 -9.7305 -5.1452 23 6 5.6798 -10.6102 -5.9354 24 6 7.0494 -10.6919 -5.7692 25 7 7.6649 -9.9461 -4.8724 26 6 7.0080 -9.0990 -4.1049 27 6 5.6356 -8.9635 -4.2139 28 6 4.6582 -8.0828 -3.4691 29 6 2.1675 -4.5889 -0.9659 30 6 1.8055 -3.6490 0.1905 31 1 -0.4850 0.8400 0.0004 32 1 0.1080 -1.3048 -1.6682 33 1 -0.6524 -2.6770 -0.8247 34 1 1.4032 -2.8051 -3.0787 35 1 -0.2940 -3.3473 -3.1346 36 1 0.0188 -6.3370 -0.9147 37 1 -1.1092 -5.3732 -2.0102 38 1 2.3983 -6.9757 -1.9579 39 1 2.8924 -10.3423 -5.1182 40 1 3.1939 -8.7670 -5.9118 41 1 5.1801 -11.2230 -6.6711 42 1 7.6218 -11.3746 -6.3799 43 1 7.5474 -8.5049 -3.3820 44 1 4.6977 -7.0639 -3.8544 45 1 4.8778 -8.0929 -2.4014 46 1 2.3362 -5.5943 -0.5804 47 1 3.0695 -4.2288 -1.4607 48 1 2.6778 -3.4999 0.8268 49 1 0.9955 -4.0830 0.7768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016830397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:38 Heat of formation + Delta-G solvation = 40.985250 kcal Electronic energy + Delta-G solvation = -29111.109429 eV Core-core repulsion = 25231.807433 eV Total energy + Delta-G solvation = -3879.301996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.27654 -39.98735 -38.60785 -36.55101 -35.51405 -33.27368 -32.24416 -31.63764 -30.43811 -29.98185 -28.35592 -28.03139 -24.84489 -24.36883 -22.62712 -22.48380 -22.07789 -21.53104 -20.70723 -20.14625 -18.27511 -17.68546 -17.06132 -16.66264 -16.35962 -16.18884 -15.53677 -15.17220 -14.85562 -14.67927 -14.17000 -14.11144 -13.88309 -13.56252 -13.43686 -13.38211 -13.29638 -13.18176 -12.78831 -12.51883 -12.28190 -11.98130 -11.75342 -11.71977 -11.66433 -11.60012 -11.35713 -10.99928 -10.73906 -10.48296 -10.37436 -10.10582 -9.98068 -9.82946 -9.73445 -9.71150 -9.65537 -9.39478 -9.23866 -8.52956 -8.46823 -6.66910 -5.81141 -3.24474 0.76524 0.91326 2.40040 2.92765 3.36757 3.42997 3.44200 3.44257 3.80729 3.95963 4.13370 4.19188 4.45408 4.47897 4.50519 4.59446 4.69690 4.87850 4.93252 5.05199 5.08852 5.09538 5.10022 5.28252 5.34178 5.36966 5.44896 5.47202 5.54014 5.60234 5.66811 5.71819 5.81675 5.98930 6.01399 6.02817 6.04858 6.24909 6.34875 6.39318 6.50302 6.57821 6.60594 6.66064 6.79501 6.92717 7.33501 7.38971 7.64161 7.64722 7.77164 8.07256 8.44270 9.19480 9.83019 10.39433 11.26613 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002224 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.246442 B =12587.252057 C =13645.343182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.182 4.182 14 C 0.067 3.933 15 H 0.132 0.868 16 N -0.692 5.692 17 C 0.525 3.475 18 O -0.539 6.539 19 C -0.110 4.110 20 H 0.110 0.890 21 C -0.069 4.069 22 C -0.050 4.050 23 C -0.160 4.160 24 C 0.096 3.904 25 N -0.485 5.485 26 C 0.115 3.885 27 C -0.148 4.148 28 C -0.068 4.068 29 C -0.097 4.097 30 C 0.149 3.851 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 -21.737 -8.072 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.096 4.096 13 C -0.220 4.220 14 C -0.039 4.039 15 H 0.149 0.851 16 N -0.341 5.341 17 C 0.311 3.689 18 O -0.416 6.416 19 C -0.132 4.132 20 H 0.128 0.872 21 C -0.106 4.106 22 C -0.058 4.058 23 C -0.180 4.180 24 C -0.061 4.061 25 N -0.193 5.193 26 C -0.042 4.042 27 C -0.150 4.150 28 C -0.106 4.106 29 C -0.136 4.136 30 C 0.023 3.977 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.958 -21.543 -8.718 24.565 hybrid contribution -0.347 0.766 0.356 0.913 sum 7.612 -20.777 -8.362 23.655 Atomic orbital electron populations 1.70023 1.05282 1.25673 1.53530 1.25051 0.95251 0.98465 1.00802 0.86391 0.78970 0.83382 0.78153 1.21013 1.21635 1.20876 1.19131 0.92802 0.85054 1.41459 0.91851 1.43958 1.37834 1.01458 1.47865 1.20759 0.88785 0.98727 0.87034 1.21886 0.99692 0.93086 0.99880 1.21955 0.97957 0.91240 0.98490 1.23528 0.96195 1.02635 0.99685 1.21938 0.93239 0.91530 0.97181 0.85051 1.45391 1.39975 1.34307 1.14380 1.20193 0.83133 0.81901 0.83683 1.90695 1.52392 1.70180 1.28297 1.22021 0.94187 0.96908 1.00074 0.87188 1.21010 0.90676 1.01384 0.97571 1.20961 0.96659 0.94073 0.94125 1.21647 0.95227 1.00101 1.01000 1.22726 0.91730 0.96599 0.95042 1.67744 1.40205 1.05893 1.05459 1.22269 0.90107 0.95035 0.96800 1.21462 0.95379 0.99085 0.99090 1.20932 0.89934 0.98744 1.00987 1.21624 0.96213 0.98589 0.97185 1.20835 0.97405 0.87087 0.92400 0.93549 0.89180 0.96357 0.92117 0.93023 0.89052 0.88323 0.76314 0.89539 0.87577 0.84788 0.82513 0.82719 0.89018 0.89182 0.93658 0.91734 0.92745 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.23 55.49 0.62 -25.08 16 2 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 8 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 9 N -0.59 -14.21 2.94 -172.26 -0.51 -14.72 16 10 C 0.17 3.98 5.40 -3.67 -0.02 3.96 16 11 C -0.11 -1.96 5.83 -26.45 -0.15 -2.11 16 12 C -0.09 -1.48 1.94 -154.49 -0.30 -1.78 16 13 C -0.18 -2.49 9.86 -26.79 -0.26 -2.75 16 14 C 0.07 0.91 6.14 -68.01 -0.42 0.49 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 16 N -0.69 -7.66 5.33 -53.88 -0.29 -7.94 16 17 C 0.53 6.03 7.05 -10.99 -0.08 5.95 16 18 O -0.54 -8.25 15.09 5.56 0.08 -8.16 16 19 C -0.11 -0.90 3.45 -90.31 -0.31 -1.21 16 20 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.07 -0.59 6.11 -26.81 -0.16 -0.75 16 22 C -0.05 -0.44 6.21 -104.07 -0.65 -1.09 16 23 C -0.16 -1.24 10.12 -39.45 -0.40 -1.64 16 24 C 0.10 0.79 11.19 -17.54 -0.20 0.59 16 25 N -0.48 -4.95 10.36 -13.22 -0.14 -5.08 16 26 C 0.11 1.05 11.19 -17.51 -0.20 0.85 16 27 C -0.15 -1.30 6.19 -104.26 -0.64 -1.95 16 28 C -0.07 -0.52 6.29 -26.93 -0.17 -0.69 16 29 C -0.10 -1.50 5.37 -26.46 -0.14 -1.64 16 30 C 0.15 2.94 6.52 -3.67 -0.02 2.92 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.87 8.10 -51.93 -0.42 0.44 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.40 3.58 7.12 -40.82 -0.29 3.29 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 1.09 7.02 -51.93 -0.36 0.73 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 45 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.04 0.56 6.75 -51.93 -0.35 0.21 16 47 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 48 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -32.08 390.91 -11.28 -43.36 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.56 Total: 3.20 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -4.36 Total: -7.79 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.31 Total: -52.83 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.08 -11.28 -43.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016830397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.342 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds