Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38945 * 119.67116 * 2 1 4 4 C 1.36438 * 120.61044 * 180.27231 * 3 2 1 5 5 C 1.40103 * 119.83090 * 359.49711 * 4 3 2 6 6 C 1.41586 * 133.37708 * 180.21389 * 5 4 3 7 7 C 1.35860 * 107.72721 * 180.25782 * 6 5 4 8 8 C 1.47062 * 125.43042 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00056 * 6.78206 * 8 7 6 10 10 N 1.34780 * 119.99877 * 186.77445 * 8 7 6 11 11 C 1.48119 * 127.03130 * 185.33373 * 10 8 7 12 12 C 1.54596 * 103.42327 * 219.28854 * 11 10 8 13 13 H 1.09001 * 110.57875 * 81.16644 * 12 11 10 14 14 C 1.52995 * 110.99149 * 204.37566 * 12 11 10 15 15 N 1.46504 * 109.47014 * 288.64764 * 14 12 11 16 16 C 1.36932 * 119.99936 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00373 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99979 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47068 * 59.99818 * 20 18 16 22 22 H 1.48494 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47231 * 299.99851 * 20 18 16 24 24 C 1.54617 * 102.91032 * 322.86915 * 12 11 10 25 25 H 1.09004 * 110.32891 * 262.80293 * 24 12 11 26 26 C 1.53000 * 110.41670 * 140.63309 * 24 12 11 27 27 C 1.47479 * 127.03409 * 5.65090 * 10 8 7 28 28 N 1.38148 * 109.13919 * 0.02562 * 7 6 5 29 29 H 0.97000 * 125.60484 * 180.02562 * 28 7 6 30 30 C 1.37474 * 108.78704 * 359.97438 * 28 7 6 31 31 C 1.37667 * 119.67651 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46528 * 90.00147 * 1 2 3 33 33 H 1.09003 * 109.47031 * 209.99896 * 1 2 3 34 34 H 1.09000 * 109.47340 * 330.00408 * 1 2 3 35 35 H 1.07997 * 119.69515 * 359.97438 * 3 2 1 36 36 H 1.08006 * 120.08673 * 179.72052 * 4 3 2 37 37 H 1.08007 * 126.13371 * 0.27556 * 6 5 4 38 38 H 1.09004 * 110.66148 * 337.76815 * 11 10 8 39 39 H 1.08995 * 110.66555 * 100.89159 * 11 10 8 40 40 H 1.08996 * 109.47319 * 48.64884 * 14 12 11 41 41 H 1.09000 * 109.47092 * 168.65480 * 14 12 11 42 42 H 0.96998 * 119.99525 * 0.02562 * 15 14 12 43 43 H 0.96994 * 119.99857 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.47242 * 302.87410 * 26 24 12 45 45 H 1.08999 * 109.46989 * 62.87375 * 26 24 12 46 46 H 1.08997 * 109.47584 * 182.87267 * 26 24 12 47 47 H 1.08996 * 109.91331 * 273.87403 * 27 10 8 48 48 H 1.08997 * 109.91675 * 35.15405 * 27 10 8 49 49 H 1.07997 * 120.09503 * 359.96747 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2073 0.0000 4 6 3.5590 1.2296 -0.0056 5 6 4.2758 0.0259 -0.0007 6 6 5.6575 -0.2831 -0.0004 7 6 5.7788 -1.6363 -0.0002 8 6 7.0484 -2.3785 -0.0004 9 8 8.1015 -1.7823 0.1237 10 7 7.0452 -3.7192 -0.1379 11 6 8.2118 -4.6277 -0.0505 12 6 7.9441 -5.6639 -1.1661 13 1 8.2441 -5.2684 -2.1365 14 6 8.6643 -6.9819 -0.8743 15 7 10.1064 -6.8016 -1.0590 16 6 10.9598 -7.8522 -0.8520 17 1 10.5697 -8.8140 -0.5531 18 6 12.3263 -7.6813 -1.0264 19 7 12.8016 -6.5093 -1.3912 20 14 13.4905 -9.1144 -0.7434 21 1 13.1464 -10.2223 -1.6705 22 1 14.8866 -8.6750 -0.9946 23 1 13.3641 -9.5853 0.6592 24 6 6.4107 -5.8521 -1.1021 25 1 6.1618 -6.7346 -0.5127 26 6 5.8286 -5.9739 -2.5117 27 6 5.8805 -4.5812 -0.4124 28 7 4.5194 -2.2039 -0.0010 29 1 4.3286 -3.1550 -0.0007 30 6 3.5809 -1.1993 -0.0011 31 6 2.1886 -1.1961 -0.0005 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6445 2.1365 -0.0004 36 1 4.0851 2.1729 -0.0101 37 1 6.4694 0.4292 0.0000 38 1 9.1371 -4.0852 -0.2447 39 1 8.2477 -5.1152 0.9237 40 1 8.4646 -7.2852 0.1534 41 1 8.3041 -7.7516 -1.5569 42 1 10.4567 -5.9377 -1.3271 43 1 13.7564 -6.3900 -1.5135 44 1 6.0953 -5.0910 -3.0926 45 1 6.2324 -6.8630 -2.9959 46 1 4.7433 -6.0546 -2.4510 47 1 5.3854 -4.8450 0.5221 48 1 5.1833 -4.0644 -1.0718 49 1 1.6449 -2.1292 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106492931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 16.395726 kcal Electronic energy + Delta-G solvation = -28936.372232 eV Core-core repulsion = 25056.003954 eV Total energy + Delta-G solvation = -3880.368278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.74202 -41.08208 -39.25452 -38.17048 -36.51933 -34.38490 -33.59415 -33.11881 -31.77064 -31.02003 -30.23943 -28.23680 -27.41177 -26.77276 -25.17220 -23.96999 -23.12313 -22.08961 -21.85131 -21.22162 -20.93715 -19.26856 -18.61658 -18.02105 -17.37768 -16.83393 -16.65914 -16.60342 -15.99659 -15.65988 -15.50960 -15.31654 -15.15549 -14.94507 -14.80930 -14.63820 -14.44656 -14.21869 -14.05182 -13.75012 -13.66719 -13.42085 -13.22352 -12.95253 -12.88903 -12.73516 -12.59007 -12.51718 -12.22109 -12.13759 -11.98096 -11.87000 -11.79898 -11.64284 -11.52018 -11.37436 -10.93597 -10.85077 -9.97457 -9.19442 -9.01174 -8.74284 -7.95084 -5.24789 -0.30528 0.65141 0.99246 1.46289 1.49759 1.55979 1.56688 1.93033 2.14256 2.55441 2.89475 3.20246 3.38113 3.39095 3.58525 3.69682 3.73368 3.99521 4.03755 4.11576 4.14649 4.23852 4.30567 4.35444 4.39359 4.44819 4.48105 4.51489 4.65706 4.68405 4.74807 4.81234 4.84010 4.89199 4.93298 4.96011 5.00225 5.04216 5.13085 5.20592 5.28301 5.31935 5.44068 5.48753 5.50082 5.54464 5.63702 5.74168 6.11442 6.25886 6.26870 6.39449 6.81050 7.32003 8.08237 8.29608 9.28323 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.002078 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.430316 B =13472.446553 C =14318.008670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.067 4.067 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.007 3.993 8 C 0.593 3.407 9 O -0.571 6.571 10 N -0.617 5.617 11 C 0.118 3.882 12 C -0.093 4.093 13 H 0.065 0.935 14 C 0.166 3.834 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.081 0.919 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.086 4.086 25 H 0.113 0.887 26 C -0.141 4.141 27 C 0.089 3.911 28 N -0.569 5.569 29 H 0.429 0.571 30 C 0.109 3.891 31 C -0.144 4.144 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.265 10.864 2.402 34.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.086 4.086 5 C -0.153 4.153 6 C -0.144 4.144 7 C -0.102 4.102 8 C 0.383 3.617 9 O -0.450 6.450 10 N -0.349 5.349 11 C -0.004 4.004 12 C -0.113 4.113 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.391 5.391 16 C -0.376 4.376 17 H 0.099 0.901 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.105 4.105 25 H 0.131 0.869 26 C -0.198 4.198 27 C -0.033 4.033 28 N -0.179 5.179 29 H 0.274 0.726 30 C -0.002 4.002 31 C -0.164 4.164 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.119 0.881 48 H 0.109 0.891 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -31.650 10.882 2.531 33.564 hybrid contribution 1.901 -0.660 -0.062 2.013 sum -29.748 10.222 2.469 31.552 Atomic orbital electron populations 1.20868 0.88620 1.04003 1.03383 1.20058 0.97474 0.91823 0.96156 1.20889 0.93480 0.98766 1.03625 1.20662 0.94490 0.96218 0.97231 1.18408 0.92385 0.94419 1.10117 1.21050 0.96424 0.93170 1.03720 1.19695 0.83865 0.93188 1.13471 1.17195 0.87527 0.80416 0.76530 1.90847 1.33050 1.68439 1.52669 1.48770 1.11722 1.04718 1.69673 1.22371 0.88454 0.89996 0.99629 1.22335 0.96351 0.94822 0.97756 0.91635 1.20793 0.82825 0.94303 0.98167 1.42628 1.02130 1.11268 1.83053 1.19627 0.88614 0.92057 1.37262 0.90119 1.25637 0.98830 0.99455 1.03275 1.69836 1.12529 1.24306 1.55626 0.85177 0.77515 0.78657 0.78203 1.20122 1.22538 1.20267 1.22078 0.91946 0.97744 0.98751 0.86850 1.21850 1.01989 1.01890 0.94069 1.22747 0.87934 0.91039 1.01562 1.42406 1.02928 1.08953 1.63632 0.72625 1.18632 0.91647 0.87427 1.02448 1.20199 0.88717 0.99897 1.07592 0.89991 0.90523 0.90185 0.83453 0.84453 0.83301 0.93052 0.90064 0.95051 0.94860 0.79802 0.94135 0.93722 0.92167 0.89448 0.88073 0.89100 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.99 71.24 0.71 0.04 16 2 C -0.05 -0.66 5.88 -19.83 -0.12 -0.77 16 3 C -0.15 -1.97 9.61 22.02 0.21 -1.76 16 4 C -0.07 -1.16 10.06 22.30 0.22 -0.94 16 5 C -0.15 -3.31 6.16 -21.36 -0.13 -3.44 16 6 C -0.12 -3.05 10.54 22.54 0.24 -2.81 16 7 C 0.01 0.19 6.77 39.91 0.27 0.46 16 8 C 0.59 19.46 7.86 86.56 0.68 20.14 16 9 O -0.57 -24.03 17.04 -4.18 -0.07 -24.10 16 10 N -0.62 -17.39 3.29 -814.36 -2.68 -20.07 16 11 C 0.12 3.94 6.47 86.61 0.56 4.50 16 12 C -0.09 -2.83 2.60 -9.70 -0.03 -2.86 16 13 H 0.07 2.27 7.86 -2.39 -0.02 2.26 16 14 C 0.17 6.16 5.58 86.38 0.48 6.64 16 15 N -0.75 -37.99 5.52 -343.45 -1.90 -39.89 16 16 C -0.24 -13.61 9.99 84.04 0.84 -12.77 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -61.38 13.06 21.65 0.28 -61.09 16 20 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.09 -1.66 3.17 -9.90 -0.03 -1.69 16 25 H 0.11 1.78 7.85 -2.38 -0.02 1.77 16 26 C -0.14 -2.36 8.90 71.98 0.64 -1.72 16 27 C 0.09 1.57 4.99 86.53 0.43 2.00 16 28 N -0.57 -10.99 5.47 -177.19 -0.97 -11.96 16 29 H 0.43 5.81 5.36 -92.71 -0.50 5.31 16 30 C 0.11 2.12 7.25 39.14 0.28 2.40 16 31 C -0.14 -2.03 9.71 22.37 0.22 -1.81 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.33 8.08 -2.39 -0.02 0.32 16 34 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 35 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.05 2.14 7.81 -2.39 -0.02 2.13 16 39 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 40 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.37 20.66 7.67 -92.71 -0.71 19.95 16 43 H 0.25 15.39 8.31 -92.71 -0.77 14.61 16 44 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 1.23 7.91 -2.39 -0.02 1.21 16 48 H 0.09 1.30 5.68 -2.39 -0.01 1.28 16 49 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -77.41 397.61 2.41 -75.01 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.24 Total: 31.97 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.95 Total: 1.43 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.26 Total: -133.02 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.07 Total: -24.10 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.41 2.41 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106492931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.401 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds