Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48496 * 109.47010 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 119.99711 * 3 2 1 6 6 H 1.48493 * 109.46905 * 239.99626 * 3 2 1 7 7 C 1.38945 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00431 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00216 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99820 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00447 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47557 * 173.10430 * 12 10 9 14 14 C 1.46902 * 111.00268 * 171.30718 * 13 12 10 15 15 H 1.08998 * 109.32295 * 310.09067 * 14 13 12 16 16 C 1.53036 * 109.32457 * 190.44946 * 14 13 12 17 17 C 1.53964 * 108.82135 * 295.14262 * 16 14 13 18 18 H 1.09008 * 112.99084 * 169.00217 * 17 16 14 19 19 C 1.55422 * 106.41996 * 293.81571 * 17 16 14 20 20 C 1.55180 * 100.35180 * 73.38274 * 19 17 16 21 21 H 1.08996 * 112.48424 * 162.67195 * 20 19 17 22 22 C 1.52978 * 109.32667 * 69.56160 * 14 13 12 23 23 N 1.47782 * 104.25280 * 40.55354 * 20 19 17 24 24 C 1.34777 * 125.85878 * 153.53399 * 23 20 19 25 25 O 1.21281 * 119.99473 * 356.69953 * 24 23 20 26 26 C 1.50696 * 120.00311 * 176.69964 * 24 23 20 27 27 C 1.53006 * 109.47282 * 186.60706 * 26 24 23 28 28 C 1.53000 * 109.47134 * 179.97438 * 27 26 24 29 29 F 1.39898 * 109.46935 * 180.02562 * 28 27 26 30 30 C 1.47090 * 108.28762 * 333.53059 * 23 20 19 31 31 H 0.97002 * 119.99775 * 0.02562 * 1 2 3 32 32 H 0.97008 * 120.00142 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.46752 * 293.10448 * 12 10 9 34 34 H 1.09002 * 109.46981 * 53.09983 * 12 10 9 35 35 H 1.00903 * 111.00263 * 47.35009 * 13 12 10 36 36 H 1.09000 * 109.57809 * 54.94943 * 16 14 13 37 37 H 1.09006 * 109.57676 * 175.34071 * 16 14 13 38 38 H 1.09002 * 111.24036 * 191.15916 * 19 17 16 39 39 H 1.09002 * 111.23546 * 315.56547 * 19 17 16 40 40 H 1.09002 * 109.53320 * 185.06418 * 22 14 13 41 41 H 1.09004 * 109.53313 * 305.29087 * 22 14 13 42 42 H 1.08995 * 109.47372 * 306.60952 * 26 24 23 43 43 H 1.09005 * 109.47251 * 66.60811 * 26 24 23 44 44 H 1.08995 * 109.47118 * 300.00401 * 27 26 24 45 45 H 1.09005 * 109.46892 * 59.99885 * 27 26 24 46 46 H 1.08997 * 109.47005 * 300.00157 * 28 27 26 47 47 H 1.08998 * 109.46670 * 60.00499 * 28 27 26 48 48 H 1.08999 * 109.97452 * 241.74940 * 30 23 20 49 49 H 1.08998 * 109.97041 * 120.46888 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1018 1.6964 1.2126 6 1 3.1019 1.6963 -1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1898 -5.9746 -0.1630 14 6 1.5227 -7.2678 0.0381 15 1 0.9572 -7.2410 0.9695 16 6 2.5767 -8.3745 0.1172 17 6 3.2916 -8.4777 -1.2425 18 1 4.1801 -9.1084 -1.2096 19 6 2.2276 -8.9720 -2.2619 20 6 1.3760 -7.6847 -2.4224 21 1 0.7506 -7.7073 -3.3148 22 6 0.5636 -7.5290 -1.1248 23 7 2.3708 -6.5924 -2.4579 24 6 2.2098 -5.3971 -3.0594 25 8 1.1989 -5.1662 -3.6884 26 6 3.2858 -4.3477 -2.9504 27 6 2.7897 -3.0418 -3.5746 28 6 3.8819 -1.9761 -3.4633 29 9 3.4280 -0.7820 -4.0335 30 6 3.5668 -7.0334 -1.7239 31 1 -0.4850 0.8401 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.7126 -4.9753 0.9473 34 1 0.5281 -4.8696 -0.8199 35 1 2.9782 -5.8739 0.4586 36 1 3.3022 -8.1330 0.8940 37 1 2.0932 -9.3236 0.3486 38 1 2.6895 -9.2602 -3.2063 39 1 1.6355 -9.7890 -1.8496 40 1 0.0012 -8.4432 -0.9351 41 1 -0.1251 -6.6901 -1.2247 42 1 3.5253 -4.1805 -1.9003 43 1 4.1781 -4.6861 -3.4771 44 1 2.5502 -3.2090 -4.6246 45 1 1.8973 -2.7034 -3.0478 46 1 4.1209 -1.8091 -2.4131 47 1 4.7743 -2.3144 -3.9898 48 1 3.7394 -6.3818 -0.8674 49 1 4.4345 -7.0196 -2.3835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108744598.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -86.579235 kcal Electronic energy + Delta-G solvation = -33335.165436 eV Core-core repulsion = 29019.562604 eV Total energy + Delta-G solvation = -4315.602832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.92002 -41.22884 -38.23825 -38.16068 -34.95471 -33.90162 -33.34073 -32.51890 -31.29935 -31.22740 -29.32604 -26.84262 -26.10345 -25.35218 -24.04323 -22.49082 -21.57861 -21.01148 -19.62122 -19.14258 -18.35084 -17.89869 -17.04701 -16.35576 -16.04617 -15.70364 -15.27227 -15.16900 -14.87936 -14.62689 -14.41122 -14.22702 -13.95399 -13.87379 -13.68265 -13.18553 -13.04369 -12.89274 -12.68621 -12.58448 -12.29433 -12.07674 -11.96050 -11.75317 -11.72571 -11.52092 -11.21402 -11.18950 -11.06061 -10.75046 -10.67250 -10.44456 -10.40814 -10.29506 -10.23759 -10.04976 -9.97122 -9.44499 -9.18575 -8.46460 -8.00279 -7.97819 -7.82956 -6.42203 -3.83394 3.20542 3.25489 3.28667 3.32321 3.50830 3.84395 4.09039 4.29538 4.41462 4.54987 4.69744 4.94824 5.10755 5.12566 5.16692 5.19920 5.24091 5.26786 5.33698 5.38583 5.41117 5.51329 5.65631 5.69025 5.71957 5.72735 5.79811 5.82736 5.87144 5.93928 5.96879 6.04300 6.09196 6.16723 6.19410 6.27598 6.29623 6.38655 6.50971 6.77397 6.82757 6.90894 7.17340 7.53494 7.57732 8.02413 8.11297 8.56558 8.80977 9.15040 9.51160 9.99469 10.74758 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.004348 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.616176 B = 6438.830025 C = 7403.617628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.029 3.971 3 Si 0.924 3.076 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.592 6.592 12 C 0.037 3.963 13 N -0.647 5.647 14 C 0.087 3.913 15 H 0.038 0.962 16 C -0.111 4.111 17 C -0.100 4.100 18 H 0.094 0.906 19 C -0.130 4.130 20 C 0.140 3.860 21 H 0.090 0.910 22 C -0.124 4.124 23 N -0.578 5.578 24 C 0.547 3.453 25 O -0.564 6.564 26 C -0.150 4.150 27 C -0.126 4.126 28 C 0.066 3.934 29 F -0.221 7.221 30 C 0.107 3.893 31 H 0.273 0.727 32 H 0.392 0.608 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.348 0.652 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.137 0.863 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.117 0.883 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -17.904 -1.177 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.751 3.249 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.186 5.186 10 C 0.226 3.774 11 O -0.479 6.479 12 C -0.095 4.095 13 N -0.283 5.283 14 C -0.023 4.023 15 H 0.056 0.944 16 C -0.149 4.149 17 C -0.119 4.119 18 H 0.112 0.888 19 C -0.168 4.168 20 C 0.036 3.964 21 H 0.108 0.892 22 C -0.163 4.163 23 N -0.310 5.310 24 C 0.338 3.662 25 O -0.444 6.444 26 C -0.189 4.189 27 C -0.165 4.165 28 C 0.011 3.989 29 F -0.202 7.202 30 C -0.016 4.016 31 H 0.083 0.917 32 H 0.225 0.775 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.079 0.921 48 H 0.134 0.866 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.076 -17.477 -2.216 18.334 hybrid contribution -0.563 0.884 1.045 1.480 sum 4.514 -16.594 -1.172 17.236 Atomic orbital electron populations 1.69603 1.06003 1.28402 1.49531 1.25244 0.95542 0.99748 0.96852 0.86012 0.79034 0.80718 0.79164 1.20966 1.20013 1.19363 1.19547 0.93124 0.82037 1.48226 0.87959 1.41868 1.09297 1.04690 1.62748 1.19655 0.88252 0.84650 0.84891 1.90401 1.13545 1.87086 1.56915 1.21862 0.95729 0.91538 1.00384 1.61544 1.09177 0.99870 1.57711 1.21482 0.94621 0.89785 0.96455 0.94379 1.21927 0.97652 0.98149 0.97158 1.22586 0.97969 0.96572 0.94764 0.88806 1.23039 0.97586 0.96713 0.99436 1.21974 0.91063 0.86142 0.97229 0.89185 1.22152 0.97576 1.01695 0.94859 1.48020 1.16583 1.13589 1.52770 1.20087 0.88001 0.81089 0.77059 1.90652 1.31340 1.79013 1.43371 1.21809 0.96828 0.93211 1.07060 1.21742 0.99545 0.93466 1.01698 1.21944 0.96489 0.80889 0.99575 1.92735 1.91189 1.49246 1.87077 1.22451 0.86622 0.94583 0.97964 0.91723 0.77489 0.94163 0.89879 0.82906 0.91462 0.91265 0.91238 0.90360 0.91361 0.91373 0.84591 0.90650 0.91686 0.89824 0.89723 0.92142 0.86566 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.03 0.77 5.50 -17.47 -0.10 0.67 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -7.93 9.68 -14.93 -0.14 -8.07 16 8 H 0.10 2.78 7.16 -52.49 -0.38 2.41 16 9 N -0.55 -13.31 5.29 -10.97 -0.06 -13.37 16 10 C 0.44 9.33 7.23 -10.99 -0.08 9.25 16 11 O -0.59 -13.31 13.07 5.54 0.07 -13.24 16 12 C 0.04 0.62 5.25 -4.98 -0.03 0.60 16 13 N -0.65 -8.77 1.35 -107.99 -0.15 -8.92 16 14 C 0.09 0.94 2.77 -67.70 -0.19 0.75 16 15 H 0.04 0.42 7.94 -51.93 -0.41 0.01 16 16 C -0.11 -0.92 5.22 -26.21 -0.14 -1.06 16 17 C -0.10 -0.85 4.33 -87.93 -0.38 -1.23 16 18 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 19 C -0.13 -1.13 6.18 -24.29 -0.15 -1.28 16 20 C 0.14 1.69 4.00 -65.61 -0.26 1.43 16 21 H 0.09 1.21 8.00 -51.93 -0.42 0.80 16 22 C -0.12 -1.42 5.26 -26.28 -0.14 -1.56 16 23 N -0.58 -8.05 1.81 -161.81 -0.29 -8.35 16 24 C 0.55 9.65 6.66 -10.99 -0.07 9.58 16 25 O -0.56 -11.98 16.23 5.56 0.09 -11.89 16 26 C -0.15 -2.55 4.86 -27.88 -0.14 -2.69 16 27 C -0.13 -2.41 4.99 -26.73 -0.13 -2.54 16 28 C 0.07 1.20 7.55 37.16 0.28 1.48 16 29 F -0.22 -4.65 17.36 2.25 0.04 -4.61 16 30 C 0.11 1.22 5.08 -2.82 -0.01 1.20 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 33 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 34 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 35 H 0.35 4.84 6.62 -39.29 -0.26 4.58 16 36 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.56 7.75 -51.93 -0.40 0.16 16 40 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 41 H 0.07 0.96 6.64 -51.93 -0.34 0.61 16 42 H 0.14 2.52 4.75 -51.93 -0.25 2.28 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 45 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 46 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.12 1.47 4.54 -58.70 -0.27 1.20 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.17 376.92 -8.16 -38.33 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -7.57 Total: 17.39 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.68 Total: 6.54 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.23 Total: -54.29 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.16 Total: -25.13 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.04 Total: -4.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.17 -8.16 -38.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108744598.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.252 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds