Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48496 * 109.47010 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 119.99711 * 3 2 1 6 6 H 1.48493 * 109.46905 * 239.99626 * 3 2 1 7 7 C 1.38945 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00431 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00216 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99820 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00447 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47557 * 173.10430 * 12 10 9 14 14 C 1.46902 * 111.00268 * 171.30718 * 13 12 10 15 15 H 1.08998 * 109.32295 * 310.09067 * 14 13 12 16 16 C 1.53036 * 109.32457 * 190.44946 * 14 13 12 17 17 C 1.53964 * 108.82135 * 295.14262 * 16 14 13 18 18 H 1.09008 * 112.99084 * 169.00217 * 17 16 14 19 19 C 1.55422 * 106.41996 * 293.81571 * 17 16 14 20 20 C 1.55180 * 100.35180 * 73.38274 * 19 17 16 21 21 H 1.08996 * 112.48424 * 162.67195 * 20 19 17 22 22 C 1.52978 * 109.32667 * 69.56160 * 14 13 12 23 23 N 1.47782 * 104.25280 * 40.55354 * 20 19 17 24 24 C 1.34777 * 125.85878 * 153.53399 * 23 20 19 25 25 O 1.21281 * 119.99473 * 356.69953 * 24 23 20 26 26 C 1.50696 * 120.00311 * 176.69964 * 24 23 20 27 27 C 1.53006 * 109.47282 * 186.60706 * 26 24 23 28 28 C 1.53000 * 109.47134 * 179.97438 * 27 26 24 29 29 F 1.39898 * 109.46935 * 180.02562 * 28 27 26 30 30 C 1.47090 * 108.28762 * 333.53059 * 23 20 19 31 31 H 0.97002 * 119.99775 * 0.02562 * 1 2 3 32 32 H 0.97008 * 120.00142 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.46752 * 293.10448 * 12 10 9 34 34 H 1.09002 * 109.46981 * 53.09983 * 12 10 9 35 35 H 1.00903 * 111.00263 * 47.35009 * 13 12 10 36 36 H 1.09000 * 109.57809 * 54.94943 * 16 14 13 37 37 H 1.09006 * 109.57676 * 175.34071 * 16 14 13 38 38 H 1.09002 * 111.24036 * 191.15916 * 19 17 16 39 39 H 1.09002 * 111.23546 * 315.56547 * 19 17 16 40 40 H 1.09002 * 109.53320 * 185.06418 * 22 14 13 41 41 H 1.09004 * 109.53313 * 305.29087 * 22 14 13 42 42 H 1.08995 * 109.47372 * 306.60952 * 26 24 23 43 43 H 1.09005 * 109.47251 * 66.60811 * 26 24 23 44 44 H 1.08995 * 109.47118 * 300.00401 * 27 26 24 45 45 H 1.09005 * 109.46892 * 59.99885 * 27 26 24 46 46 H 1.08997 * 109.47005 * 300.00157 * 28 27 26 47 47 H 1.08998 * 109.46670 * 60.00499 * 28 27 26 48 48 H 1.08999 * 109.97452 * 241.74940 * 30 23 20 49 49 H 1.08998 * 109.97041 * 120.46888 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1018 1.6964 1.2126 6 1 3.1019 1.6963 -1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1898 -5.9746 -0.1630 14 6 1.5227 -7.2678 0.0381 15 1 0.9572 -7.2410 0.9695 16 6 2.5767 -8.3745 0.1172 17 6 3.2916 -8.4777 -1.2425 18 1 4.1801 -9.1084 -1.2096 19 6 2.2276 -8.9720 -2.2619 20 6 1.3760 -7.6847 -2.4224 21 1 0.7506 -7.7073 -3.3148 22 6 0.5636 -7.5290 -1.1248 23 7 2.3708 -6.5924 -2.4579 24 6 2.2098 -5.3971 -3.0594 25 8 1.1989 -5.1662 -3.6884 26 6 3.2858 -4.3477 -2.9504 27 6 2.7897 -3.0418 -3.5746 28 6 3.8819 -1.9761 -3.4633 29 9 3.4280 -0.7820 -4.0335 30 6 3.5668 -7.0334 -1.7239 31 1 -0.4850 0.8401 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.7126 -4.9753 0.9473 34 1 0.5281 -4.8696 -0.8199 35 1 2.9782 -5.8739 0.4586 36 1 3.3022 -8.1330 0.8940 37 1 2.0932 -9.3236 0.3486 38 1 2.6895 -9.2602 -3.2063 39 1 1.6355 -9.7890 -1.8496 40 1 0.0012 -8.4432 -0.9351 41 1 -0.1251 -6.6901 -1.2247 42 1 3.5253 -4.1805 -1.9003 43 1 4.1781 -4.6861 -3.4771 44 1 2.5502 -3.2090 -4.6246 45 1 1.8973 -2.7034 -3.0478 46 1 4.1209 -1.8091 -2.4131 47 1 4.7743 -2.3144 -3.9898 48 1 3.7394 -6.3818 -0.8674 49 1 4.4345 -7.0196 -2.3835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108744598.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = -104.887914 kcal Electronic energy + Delta-G solvation = -33335.959360 eV Core-core repulsion = 29019.562604 eV Total energy + Delta-G solvation = -4316.396756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.55241 -42.22960 -39.98969 -39.50607 -36.31010 -35.63645 -34.85255 -33.63400 -33.19744 -32.18795 -30.42671 -28.27411 -27.58026 -26.33827 -25.69444 -23.67344 -22.63942 -22.19064 -21.07438 -20.40479 -19.84122 -19.48075 -18.19905 -17.83725 -17.52569 -17.04645 -16.81851 -16.70717 -16.27051 -16.04790 -15.86496 -15.71035 -15.55933 -15.33041 -15.07556 -14.41302 -14.16806 -14.06569 -13.80553 -13.71094 -13.54139 -13.44423 -13.24919 -13.07353 -12.92501 -12.84375 -12.77209 -12.57588 -12.41654 -12.25274 -12.19535 -12.13336 -11.94563 -11.59782 -11.46038 -11.32190 -11.09951 -10.93061 -10.58945 -10.25879 -9.94543 -9.14152 -8.97069 -8.43439 -5.89842 1.37419 1.41435 1.49457 1.88644 2.07542 2.28462 2.35965 2.96939 3.26399 3.46988 3.60466 3.74718 3.76609 3.87023 3.91134 3.92804 4.13715 4.19306 4.26906 4.29111 4.36090 4.37243 4.43270 4.48375 4.49898 4.55030 4.64524 4.74010 4.80313 4.85509 4.86924 5.03458 5.05077 5.12489 5.19981 5.21068 5.27191 5.33007 5.36530 5.43281 5.45363 5.57876 5.79858 5.93130 6.11393 6.47216 6.60327 6.90787 7.15194 7.49007 7.59277 8.10051 8.74236 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.004348 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.616176 B = 6438.830025 C = 7403.617628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.014 4.014 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.312 4.312 8 H 0.089 0.911 9 N -0.572 5.572 10 C 0.450 3.550 11 O -0.599 6.599 12 C 0.054 3.946 13 N -0.644 5.644 14 C 0.084 3.916 15 H 0.043 0.957 16 C -0.103 4.103 17 C -0.087 4.087 18 H 0.126 0.874 19 C -0.115 4.115 20 C 0.126 3.874 21 H 0.068 0.932 22 C -0.120 4.120 23 N -0.570 5.570 24 C 0.538 3.462 25 O -0.614 6.614 26 C -0.141 4.141 27 C -0.118 4.118 28 C 0.067 3.933 29 F -0.238 7.238 30 C 0.097 3.903 31 H 0.273 0.727 32 H 0.388 0.612 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.350 0.650 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -21.153 -0.411 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.214 4.214 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.442 4.442 8 H 0.107 0.893 9 N -0.208 5.208 10 C 0.237 3.763 11 O -0.486 6.486 12 C -0.078 4.078 13 N -0.280 5.280 14 C -0.025 4.025 15 H 0.061 0.939 16 C -0.141 4.141 17 C -0.105 4.105 18 H 0.144 0.856 19 C -0.153 4.153 20 C 0.022 3.978 21 H 0.086 0.914 22 C -0.159 4.159 23 N -0.299 5.299 24 C 0.328 3.672 25 O -0.498 6.498 26 C -0.180 4.180 27 C -0.156 4.156 28 C 0.012 3.988 29 F -0.219 7.219 30 C -0.026 4.026 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.163 -20.792 -1.411 22.037 hybrid contribution -1.156 1.727 0.788 2.223 sum 6.007 -19.065 -0.622 19.998 Atomic orbital electron populations 1.69691 1.07016 1.28910 1.51055 1.25952 0.96292 1.02363 0.96771 0.85173 0.77985 0.77424 0.79047 1.20321 1.18952 1.19930 1.19545 0.92667 0.83334 1.48629 0.89265 1.41967 1.09029 1.05120 1.64662 1.20395 0.88344 0.85359 0.82158 1.90386 1.14238 1.87593 1.56363 1.21596 0.95538 0.90479 1.00204 1.61643 1.08531 1.00023 1.57843 1.21649 0.95523 0.89166 0.96177 0.93910 1.21931 0.96930 0.97849 0.97365 1.22630 0.99024 0.94476 0.94371 0.85642 1.23017 0.97083 0.95132 1.00098 1.22208 0.91383 0.87466 0.96725 0.91392 1.22139 0.97262 1.01655 0.94862 1.48082 1.17947 1.12727 1.51175 1.20164 0.87406 0.82300 0.77345 1.90623 1.33039 1.80207 1.45883 1.21706 0.97891 0.92214 1.06234 1.21607 0.98050 0.94898 1.01068 1.22077 0.97669 0.79829 0.99211 1.92697 1.91555 1.50457 1.87236 1.22663 0.85777 0.96614 0.97516 0.91766 0.78006 0.92991 0.91639 0.82721 0.90409 0.88532 0.90763 0.87663 0.88385 0.95033 0.85923 0.87443 0.91690 0.94679 0.91474 0.87469 0.87682 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.24 13.05 21.66 0.28 -51.96 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.98 44.35 29.55 68.60 2.03 46.37 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.31 -17.17 9.68 84.04 0.81 -16.35 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.57 -28.96 5.29 -306.99 -1.62 -30.59 16 10 C 0.45 19.70 7.23 87.66 0.63 20.33 16 11 O -0.60 -27.34 13.07 -3.08 -0.04 -27.38 16 12 C 0.05 1.86 5.25 85.56 0.45 2.31 16 13 N -0.64 -16.75 1.35 -495.56 -0.67 -17.42 16 14 C 0.08 1.61 2.77 44.92 0.12 1.73 16 15 H 0.04 0.82 7.94 -2.39 -0.02 0.80 16 16 C -0.10 -1.19 5.22 30.93 0.16 -1.03 16 17 C -0.09 -1.03 4.33 -9.05 -0.04 -1.07 16 18 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 19 C -0.12 -1.51 6.18 32.17 0.20 -1.31 16 20 C 0.13 2.85 4.00 45.79 0.18 3.03 16 21 H 0.07 1.84 8.00 -2.39 -0.02 1.82 16 22 C -0.12 -2.57 5.26 30.89 0.16 -2.40 16 23 N -0.57 -15.37 1.81 -784.25 -1.42 -16.78 16 24 C 0.54 19.36 6.66 87.66 0.58 19.94 16 25 O -0.61 -27.51 16.23 -3.03 -0.05 -27.56 16 26 C -0.14 -4.85 4.86 29.85 0.15 -4.70 16 27 C -0.12 -4.68 4.99 30.60 0.15 -4.53 16 28 C 0.07 2.46 7.55 71.98 0.54 3.00 16 29 F -0.24 -10.22 17.36 44.97 0.78 -9.44 16 30 C 0.10 1.92 5.08 86.85 0.44 2.36 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.39 20.03 7.90 -92.70 -0.73 19.30 16 33 H 0.05 1.68 7.95 -2.38 -0.02 1.66 16 34 H 0.07 2.55 6.70 -2.39 -0.02 2.54 16 35 H 0.35 9.11 6.62 -89.69 -0.59 8.52 16 36 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.10 0.72 7.97 -2.38 -0.02 0.70 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.90 7.75 -2.39 -0.02 0.89 16 40 H 0.10 1.51 8.00 -2.39 -0.02 1.49 16 41 H 0.03 0.90 6.64 -2.39 -0.02 0.88 16 42 H 0.12 4.59 4.75 -2.39 -0.01 4.58 16 43 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 44 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 45 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 48 H 0.11 2.40 4.54 -15.75 -0.07 2.33 16 49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -70.96 376.92 3.91 -67.05 By element: Atomic # 1 Polarization: 47.11 SS G_CDS: -0.40 Total: 46.71 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 5.02 Total: 20.99 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.43 Total: -116.75 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.09 Total: -54.93 kcal Atomic # 9 Polarization: -10.22 SS G_CDS: 0.78 Total: -9.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -70.96 3.91 -67.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108744598.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.841 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds