Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00374 * 2 1 4 4 H 1.48491 * 109.47373 * 270.00700 * 3 2 1 5 5 H 1.48505 * 109.46905 * 30.00775 * 3 2 1 6 6 H 1.48500 * 109.47086 * 150.00168 * 3 2 1 7 7 C 1.38952 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00345 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00074 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99660 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00082 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47155 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99779 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46874 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.46905 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99943 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99730 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00196 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.58583 * 349.47188 * 19 17 16 21 21 C 1.53187 * 109.58550 * 109.89998 * 19 17 16 22 22 C 1.53044 * 109.31222 * 174.42110 * 21 19 17 23 23 C 1.53033 * 109.54056 * 298.63560 * 22 21 19 24 24 C 1.53194 * 109.31344 * 61.36266 * 23 22 21 25 25 N 1.46924 * 108.77461 * 305.36611 * 24 23 22 26 26 C 1.34777 * 120.63217 * 233.58211 * 25 24 23 27 27 N 1.34779 * 119.99843 * 5.20373 * 26 25 24 28 28 O 1.21592 * 120.00097 * 185.20663 * 26 25 24 29 29 H 0.97007 * 119.99963 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99857 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46605 * 60.00258 * 12 10 9 32 32 H 1.08996 * 109.47201 * 300.00608 * 12 10 9 33 33 H 1.00903 * 110.99294 * 56.05098 * 13 12 10 34 34 H 1.09000 * 109.47230 * 60.00403 * 14 13 12 35 35 H 1.09000 * 109.47561 * 299.99952 * 14 13 12 36 36 H 1.09000 * 109.46753 * 300.00160 * 15 14 13 37 37 H 1.09000 * 109.47096 * 60.00035 * 15 14 13 38 38 H 0.97001 * 119.99987 * 359.97438 * 16 15 14 39 39 H 1.09004 * 109.49969 * 294.37107 * 21 19 17 40 40 H 1.09000 * 109.49747 * 54.47270 * 21 19 17 41 41 H 1.09000 * 109.46090 * 178.61285 * 22 21 19 42 42 H 1.09004 * 109.45836 * 58.65977 * 22 21 19 43 43 H 1.09003 * 109.49801 * 301.41346 * 23 22 21 44 44 H 1.09000 * 109.50018 * 181.31440 * 23 22 21 45 45 H 1.08992 * 109.58816 * 185.57895 * 24 23 22 46 46 H 1.09005 * 109.70152 * 65.22265 * 24 23 22 47 47 H 0.96996 * 120.00027 * 4.92357 * 27 26 25 48 48 H 0.97002 * 119.99732 * 184.92414 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9796 -0.0007 14 6 1.4977 -7.2709 -0.0008 15 6 2.5226 -8.4069 -0.0009 16 7 1.8241 -9.6947 -0.0016 17 6 2.5288 -10.8436 -0.0013 18 8 3.7412 -10.8112 -0.0009 19 6 1.8103 -12.1683 -0.0014 20 1 0.7486 -12.0081 0.1859 21 6 1.9977 -12.8539 -1.3584 22 6 1.3857 -14.2557 -1.3060 23 6 2.1034 -15.0880 -0.2410 24 6 1.9172 -14.4277 1.1287 25 7 2.3705 -13.0325 1.0465 26 6 3.2823 -12.5544 1.9162 27 7 3.8650 -13.3831 2.8051 28 8 3.5793 -11.3754 1.8988 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6166 -4.9208 -0.8897 32 1 0.6171 -4.9205 0.8902 33 1 2.8334 -5.9125 0.7803 34 1 0.8724 -7.3450 -0.8905 35 1 0.8731 -7.3456 0.8894 36 1 3.1474 -8.3324 -0.8909 37 1 3.1475 -8.3326 0.8891 38 1 0.8544 -9.7205 -0.0015 39 1 1.5018 -12.2692 -2.1331 40 1 3.0615 -12.9296 -1.5839 41 1 1.4959 -14.7366 -2.2779 42 1 0.3274 -14.1807 -1.0561 43 1 3.1661 -15.1427 -0.4771 44 1 1.6826 -16.0934 -0.2204 45 1 2.5073 -14.9602 1.8744 46 1 0.8642 -14.4539 1.4092 47 1 3.6823 -14.3351 2.7727 48 1 4.4672 -13.0274 3.4773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147360021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = -76.937445 kcal Electronic energy + Delta-G solvation = -29469.890611 eV Core-core repulsion = 25174.625840 eV Total energy + Delta-G solvation = -4295.264771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25652 -38.89005 -38.23805 -37.70954 -36.10568 -34.26006 -34.04936 -33.63711 -32.81713 -31.70621 -31.18655 -29.23834 -26.48545 -25.60637 -24.36489 -23.63190 -22.09633 -21.85233 -20.81540 -19.81760 -19.22499 -18.75131 -17.85590 -17.31414 -16.81917 -16.25927 -16.04984 -15.77741 -15.54460 -15.19392 -15.07369 -14.87680 -14.55084 -14.51245 -14.19485 -13.98263 -13.87420 -13.73816 -13.36747 -13.31581 -12.91666 -12.80519 -12.25339 -12.05320 -11.82847 -11.70174 -11.47484 -11.41996 -11.36021 -11.28509 -11.23489 -10.99533 -10.36203 -10.18420 -10.01419 -9.93357 -9.48975 -9.47364 -9.09797 -8.67408 -8.43589 -8.04557 -7.92402 -6.38436 -3.78984 2.16406 2.82685 3.02650 3.21025 3.21144 3.29331 3.35828 3.79774 3.94792 4.15407 4.20238 4.24634 4.34056 4.45933 4.53821 4.64857 4.72733 4.86132 4.92288 5.04750 5.12155 5.18866 5.26586 5.28737 5.30854 5.33434 5.49475 5.52302 5.53963 5.79662 5.80646 5.93563 5.99629 6.06171 6.12033 6.29807 6.35311 6.51024 6.68141 7.20836 7.53572 7.55149 7.58794 7.67014 8.10073 8.30610 8.54808 8.65082 9.21540 9.57869 10.09689 10.79390 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.001596 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.339591 B =17540.935799 C =17992.350797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.128 3.872 16 N -0.730 5.730 17 C 0.522 3.478 18 O -0.496 6.496 19 C 0.149 3.851 20 H 0.086 0.914 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.139 4.139 24 C 0.115 3.885 25 N -0.622 5.622 26 C 0.697 3.303 27 N -0.870 5.870 28 O -0.546 6.546 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.353 0.647 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.391 0.609 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 -35.699 1.699 36.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.079 4.079 15 C 0.005 3.995 16 N -0.384 5.384 17 C 0.306 3.694 18 O -0.368 6.368 19 C 0.041 3.959 20 H 0.104 0.896 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.177 4.177 24 C -0.008 4.008 25 N -0.363 5.363 26 C 0.397 3.603 27 N -0.441 5.441 28 O -0.420 6.420 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.172 0.828 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.221 0.779 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.611 -34.637 0.898 34.747 hybrid contribution -1.010 0.364 1.233 1.635 sum -3.620 -34.273 2.131 34.529 Atomic orbital electron populations 1.69615 1.05929 1.28099 1.50782 1.25259 0.95644 0.99711 0.97375 0.85846 0.79219 0.80768 0.78389 1.20400 1.20971 1.19427 1.19722 0.93411 0.82239 1.47449 0.87895 1.41854 1.09178 1.04575 1.64512 1.19804 0.88407 0.84719 0.84462 1.90537 1.13744 1.87036 1.55180 1.21665 0.94260 0.90840 1.01258 1.59937 1.18776 0.99504 1.51687 1.22079 0.95663 0.89476 1.00731 1.21159 0.94670 0.80473 1.03243 1.45694 1.09620 1.05753 1.77291 1.19692 0.88049 0.84567 0.77072 1.90740 1.13764 1.86720 1.45579 1.20937 0.97310 0.89152 0.88463 0.89602 1.21875 1.03245 0.96438 0.94832 1.21496 0.99746 0.94809 0.99410 1.21968 1.01912 0.99145 0.94701 1.21654 1.00289 0.80988 0.97863 1.46974 1.44963 1.11780 1.32596 1.15971 0.79127 0.85434 0.79737 1.43179 1.53240 1.10471 1.37187 1.91209 1.65223 1.14437 1.71149 0.91922 0.77468 0.89505 0.93778 0.82779 0.90633 0.95110 0.90657 0.91388 0.77349 0.89984 0.90317 0.90969 0.91378 0.91166 0.90398 0.90220 0.90991 0.77901 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 9 N -0.56 -14.64 5.29 -10.96 -0.06 -14.70 16 10 C 0.44 10.76 7.82 -10.99 -0.09 10.67 16 11 O -0.58 -16.40 15.78 5.54 0.09 -16.32 16 12 C 0.05 0.96 6.17 -4.98 -0.03 0.92 16 13 N -0.67 -11.46 6.13 -115.06 -0.70 -12.17 16 14 C 0.05 0.65 5.80 -3.82 -0.02 0.63 16 15 C 0.13 1.76 5.93 -4.04 -0.02 1.74 16 16 N -0.73 -8.26 5.56 -60.29 -0.33 -8.59 16 17 C 0.52 6.77 4.97 -10.99 -0.05 6.72 16 18 O -0.50 -8.85 13.68 -20.18 -0.28 -9.13 16 19 C 0.15 1.27 3.30 -68.75 -0.23 1.04 16 20 H 0.09 0.52 7.96 -51.93 -0.41 0.10 16 21 C -0.13 -0.83 5.35 -26.61 -0.14 -0.97 16 22 C -0.12 -0.46 5.88 -26.69 -0.16 -0.62 16 23 C -0.14 -0.47 6.08 -26.61 -0.16 -0.63 16 24 C 0.12 0.46 6.43 -3.71 -0.02 0.43 16 25 N -0.62 -5.14 2.97 -172.23 -0.51 -5.65 16 26 C 0.70 7.97 8.19 -86.92 -0.71 7.26 16 27 N -0.87 -6.08 8.77 27.64 0.24 -5.84 16 28 O -0.55 -9.14 12.37 -20.44 -0.25 -9.39 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.35 6.39 8.43 -39.29 -0.33 6.06 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.39 3.11 8.34 -40.82 -0.34 2.77 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 45 H 0.08 0.17 5.58 -51.93 -0.29 -0.12 16 46 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.39 1.39 6.32 -40.82 -0.26 1.13 16 48 H 0.41 2.70 8.93 -40.82 -0.36 2.34 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -39.46 390.35 -9.43 -48.89 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.33 Total: 15.72 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: -1.88 Total: 19.02 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -0.64 Total: -71.11 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.44 Total: -34.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.46 -9.43 -48.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147360021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.048 kcal (2) G-P(sol) polarization free energy of solvation -39.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds