Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86799 * 120.00638 * 2 1 4 4 H 1.48508 * 109.46992 * 270.00233 * 3 2 1 5 5 H 1.48498 * 109.46995 * 29.99696 * 3 2 1 6 6 H 1.48492 * 109.47524 * 150.00155 * 3 2 1 7 7 C 1.38959 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00039 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00006 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.46802 * 179.97438 * 12 10 9 14 14 C 1.46834 * 110.99922 * 293.95027 * 13 12 10 15 15 C 1.50142 * 110.27541 * 174.31717 * 14 13 12 16 16 C 1.29824 * 123.28229 * 342.94558 * 15 14 13 17 17 C 1.50708 * 118.55374 * 180.08961 * 16 15 14 18 18 C 1.52999 * 109.46895 * 95.00501 * 17 16 15 19 19 N 1.46503 * 109.47201 * 180.02562 * 18 17 16 20 20 C 1.34769 * 120.00342 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99645 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00405 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47264 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47075 * 179.97438 * 23 22 20 25 25 F 1.39896 * 109.47289 * 179.97438 * 24 23 22 26 26 C 1.50303 * 122.89556 * 0.37575 * 16 15 14 27 27 C 1.47236 * 111.00073 * 56.88475 * 13 12 10 28 28 H 0.97008 * 119.99974 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99790 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47112 * 59.99824 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99794 * 12 10 9 32 32 H 1.09003 * 109.34026 * 54.07411 * 14 13 12 33 33 H 1.09004 * 109.20884 * 294.47656 * 14 13 12 34 34 H 1.08003 * 118.36194 * 162.92870 * 15 14 13 35 35 H 1.08998 * 109.47134 * 215.00457 * 17 16 15 36 36 H 1.08998 * 109.47002 * 335.00605 * 17 16 15 37 37 H 1.09007 * 109.46912 * 299.99874 * 18 17 16 38 38 H 1.08998 * 109.47211 * 60.00232 * 18 17 16 39 39 H 0.96998 * 119.99454 * 0.02562 * 19 18 17 40 40 H 1.08998 * 109.46785 * 300.00096 * 22 20 19 41 41 H 1.08998 * 109.46983 * 60.00019 * 22 20 19 42 42 H 1.08998 * 109.47193 * 299.99717 * 23 22 20 43 43 H 1.08998 * 109.47211 * 60.00029 * 23 22 20 44 44 H 1.08998 * 109.47054 * 300.00017 * 24 23 22 45 45 H 1.08998 * 109.46902 * 60.00055 * 24 23 22 46 46 H 1.09005 * 109.43619 * 103.57376 * 26 16 15 47 47 H 1.09001 * 109.43345 * 223.42680 * 26 16 15 48 48 H 1.09001 * 109.63673 * 287.49956 * 27 13 12 49 49 H 1.09002 * 109.63921 * 47.90301 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.6999 7 6 2.0087 -1.2035 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 -0.0011 10 6 4.0535 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0001 12 6 5.5606 -2.3708 -0.0011 13 7 6.0501 -3.7559 -0.0004 14 6 5.7008 -4.4369 1.2526 15 6 6.0851 -5.8865 1.1816 16 6 6.3417 -6.5018 0.0676 17 6 6.7156 -7.9608 0.1200 18 6 5.4674 -8.8157 -0.1082 19 7 5.8307 -10.2340 -0.0566 20 6 4.8855 -11.1786 -0.2315 21 8 3.7341 -10.8544 -0.4321 22 6 5.2591 -12.6375 -0.1779 23 6 4.0109 -13.4924 -0.4062 24 6 4.3904 -14.9736 -0.3524 25 9 3.2490 -15.7553 -0.5606 26 6 6.2883 -5.8216 -1.2717 27 6 5.5179 -4.5042 -1.1514 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3635 -0.0007 30 1 5.9239 -1.8570 0.8889 31 1 5.9239 -1.8570 -0.8911 32 1 4.6268 -4.3561 1.4202 33 1 6.2315 -3.9629 2.0784 34 1 6.1517 -6.4454 2.1034 35 1 7.4501 -8.1758 -0.6561 36 1 7.1408 -8.1920 1.0967 37 1 4.7329 -8.6007 0.6681 38 1 5.0422 -8.5845 -1.0848 39 1 6.7515 -10.4932 0.1042 40 1 5.9936 -12.8531 -0.9538 41 1 5.6841 -12.8680 0.7990 42 1 3.2760 -13.2768 0.3694 43 1 3.5863 -13.2617 -1.3833 44 1 5.1251 -15.1888 -1.1283 45 1 4.8152 -15.2045 0.6244 46 1 7.3024 -5.6184 -1.6160 47 1 5.7861 -6.4712 -1.9886 48 1 4.4593 -4.7118 -0.9955 49 1 5.6459 -3.9171 -2.0609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160942371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = -113.524715 kcal Electronic energy + Delta-G solvation = -28801.002027 eV Core-core repulsion = 24484.230752 eV Total energy + Delta-G solvation = -4316.771276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.98091 -40.07190 -39.61107 -37.82260 -35.89981 -34.41093 -34.25783 -33.55149 -31.77181 -30.60141 -30.30611 -28.02787 -26.76293 -24.71953 -23.48198 -23.22682 -22.33265 -21.52650 -20.62426 -19.48668 -18.49079 -17.57295 -17.25870 -16.97433 -16.47601 -15.98627 -15.93781 -15.85727 -15.43112 -15.22083 -15.08328 -14.88821 -14.55443 -14.20028 -13.98035 -13.78940 -13.59674 -13.45056 -12.95220 -12.85465 -12.52430 -12.43400 -12.30647 -12.10344 -12.04148 -11.92838 -11.79110 -11.47891 -11.33916 -11.27943 -11.10091 -10.94672 -10.66990 -10.61587 -10.33954 -10.07013 -10.05175 -9.60320 -9.35716 -9.33174 -8.62090 -8.21595 -7.51982 -6.37186 -3.88521 2.28556 2.36094 2.88506 2.98806 3.03292 3.11866 3.62944 4.05156 4.11987 4.23840 4.28390 4.29281 4.55517 4.62409 4.71368 4.72150 4.74902 4.84946 4.91195 4.99384 5.12411 5.18094 5.25841 5.36355 5.44480 5.49315 5.54456 5.64578 5.73354 5.76663 5.79223 5.84001 5.87762 5.91234 5.98470 6.05780 6.13706 6.22956 6.33105 6.58502 6.70958 7.03955 7.17850 7.31976 7.37384 7.51153 7.94491 8.09351 8.51645 8.88545 9.36067 9.74312 10.75566 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.001715 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.654030 B =16319.995649 C =17619.841505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.119 0.881 9 N -0.583 5.583 10 C 0.413 3.587 11 O -0.575 6.575 12 C 0.036 3.964 13 N -0.508 5.508 14 C 0.065 3.935 15 C -0.133 4.133 16 C -0.127 4.127 17 C -0.090 4.090 18 C 0.121 3.879 19 N -0.732 5.732 20 C 0.508 3.492 21 O -0.534 6.534 22 C -0.138 4.138 23 C -0.141 4.141 24 C 0.062 3.938 25 F -0.218 7.218 26 C -0.072 4.072 27 C 0.031 3.969 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.834 -20.800 0.502 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.137 0.863 9 N -0.221 5.221 10 C 0.199 3.801 11 O -0.460 6.460 12 C -0.096 4.096 13 N -0.231 5.231 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 N -0.384 5.384 20 C 0.294 3.706 21 O -0.410 6.410 22 C -0.178 4.178 23 C -0.179 4.179 24 C 0.007 3.993 25 F -0.199 7.199 26 C -0.109 4.109 27 C -0.096 4.096 28 H 0.085 0.915 29 H 0.204 0.796 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.868 -21.136 0.311 28.334 hybrid contribution 0.135 1.387 0.226 1.411 sum 19.003 -19.749 0.537 27.412 Atomic orbital electron populations 1.69626 1.05725 1.27638 1.48691 1.25083 0.95513 0.98115 0.97403 0.86659 0.79804 0.83906 0.78967 1.19548 1.20118 1.19399 1.19460 0.79448 0.96605 1.48221 0.86336 1.42408 1.07630 1.06504 1.65531 1.21060 0.89918 0.84579 0.84499 1.90458 1.69855 1.30449 1.55228 1.22129 0.92067 0.91817 1.03583 1.62957 1.56042 1.00963 1.03093 1.21148 1.01651 0.91191 0.92225 1.22092 0.99637 0.96081 0.97306 1.20594 1.02727 0.93747 0.95704 1.20827 0.96755 0.92722 1.02454 1.21421 0.97352 0.78417 1.03018 1.46074 1.11580 1.06811 1.73979 1.20598 0.85571 0.87951 0.76489 1.90775 1.19416 1.83064 1.47701 1.21540 0.99776 0.91924 1.04582 1.21930 0.97929 0.92660 1.05408 1.21993 0.84911 0.89546 1.02814 1.92782 1.53981 1.76410 1.96701 1.20434 1.00594 0.95786 0.94129 1.22503 1.00579 0.93572 0.92980 0.91521 0.79589 0.89248 0.89044 0.90016 0.90766 0.87717 0.90886 0.91079 0.91118 0.91083 0.76705 0.88516 0.88514 0.89805 0.89818 0.90742 0.90749 0.91118 0.91345 0.89487 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.58 -13.56 5.09 -10.96 -0.06 -13.62 16 10 C 0.41 8.99 7.11 -10.98 -0.08 8.92 16 11 O -0.57 -14.47 11.22 5.55 0.06 -14.41 16 12 C 0.04 0.59 5.84 -4.97 -0.03 0.56 16 13 N -0.51 -8.06 4.93 -237.56 -1.17 -9.23 16 14 C 0.07 1.02 5.41 -5.28 -0.03 0.99 16 15 C -0.13 -1.77 9.50 -35.97 -0.34 -2.11 16 16 C -0.13 -1.54 5.15 -100.92 -0.52 -2.06 16 17 C -0.09 -0.78 5.38 -27.88 -0.15 -0.93 16 18 C 0.12 1.23 5.66 -4.04 -0.02 1.21 16 19 N -0.73 -5.61 5.56 -60.29 -0.33 -5.95 16 20 C 0.51 4.84 7.83 -10.99 -0.09 4.75 16 21 O -0.53 -7.92 15.98 5.56 0.09 -7.83 16 22 C -0.14 -0.69 5.70 -27.89 -0.16 -0.85 16 23 C -0.14 -0.97 4.96 -26.73 -0.13 -1.10 16 24 C 0.06 0.33 7.55 37.16 0.28 0.61 16 25 F -0.22 -1.98 17.36 2.25 0.04 -1.94 16 26 C -0.07 -0.92 6.04 -28.03 -0.17 -1.09 16 27 C 0.03 0.51 4.91 -3.59 -0.02 0.49 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 30 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.59 5.79 -51.93 -0.30 1.29 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.19 7.81 -52.48 -0.41 0.78 16 35 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 1.64 8.47 -40.82 -0.35 1.30 16 40 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 1.75 5.52 -51.93 -0.29 1.46 16 49 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -35.20 398.08 -8.89 -44.09 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.87 Total: 11.49 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.70 Total: 1.69 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.79 Total: -53.53 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.15 Total: -22.23 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.20 -8.89 -44.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160942371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.438 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds