Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86799 * 120.00638 * 2 1 4 4 H 1.48508 * 109.46992 * 270.00233 * 3 2 1 5 5 H 1.48498 * 109.46995 * 29.99696 * 3 2 1 6 6 H 1.48492 * 109.47524 * 150.00155 * 3 2 1 7 7 C 1.38959 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00039 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00006 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.46802 * 179.97438 * 12 10 9 14 14 C 1.46834 * 110.99922 * 293.95027 * 13 12 10 15 15 C 1.50142 * 110.27541 * 174.31717 * 14 13 12 16 16 C 1.29824 * 123.28229 * 342.94558 * 15 14 13 17 17 C 1.50708 * 118.55374 * 180.08961 * 16 15 14 18 18 C 1.52999 * 109.46895 * 95.00501 * 17 16 15 19 19 N 1.46503 * 109.47201 * 180.02562 * 18 17 16 20 20 C 1.34769 * 120.00342 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99645 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00405 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47264 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47075 * 179.97438 * 23 22 20 25 25 F 1.39896 * 109.47289 * 179.97438 * 24 23 22 26 26 C 1.50303 * 122.89556 * 0.37575 * 16 15 14 27 27 C 1.47236 * 111.00073 * 56.88475 * 13 12 10 28 28 H 0.97008 * 119.99974 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99790 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47112 * 59.99824 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99794 * 12 10 9 32 32 H 1.09003 * 109.34026 * 54.07411 * 14 13 12 33 33 H 1.09004 * 109.20884 * 294.47656 * 14 13 12 34 34 H 1.08003 * 118.36194 * 162.92870 * 15 14 13 35 35 H 1.08998 * 109.47134 * 215.00457 * 17 16 15 36 36 H 1.08998 * 109.47002 * 335.00605 * 17 16 15 37 37 H 1.09007 * 109.46912 * 299.99874 * 18 17 16 38 38 H 1.08998 * 109.47211 * 60.00232 * 18 17 16 39 39 H 0.96998 * 119.99454 * 0.02562 * 19 18 17 40 40 H 1.08998 * 109.46785 * 300.00096 * 22 20 19 41 41 H 1.08998 * 109.46983 * 60.00019 * 22 20 19 42 42 H 1.08998 * 109.47193 * 299.99717 * 23 22 20 43 43 H 1.08998 * 109.47211 * 60.00029 * 23 22 20 44 44 H 1.08998 * 109.47054 * 300.00017 * 24 23 22 45 45 H 1.08998 * 109.46902 * 60.00055 * 24 23 22 46 46 H 1.09005 * 109.43619 * 103.57376 * 26 16 15 47 47 H 1.09001 * 109.43345 * 223.42680 * 26 16 15 48 48 H 1.09001 * 109.63673 * 287.49956 * 27 13 12 49 49 H 1.09002 * 109.63921 * 47.90301 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.6999 7 6 2.0087 -1.2035 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 -0.0011 10 6 4.0535 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0001 12 6 5.5606 -2.3708 -0.0011 13 7 6.0501 -3.7559 -0.0004 14 6 5.7008 -4.4369 1.2526 15 6 6.0851 -5.8865 1.1816 16 6 6.3417 -6.5018 0.0676 17 6 6.7156 -7.9608 0.1200 18 6 5.4674 -8.8157 -0.1082 19 7 5.8307 -10.2340 -0.0566 20 6 4.8855 -11.1786 -0.2315 21 8 3.7341 -10.8544 -0.4321 22 6 5.2591 -12.6375 -0.1779 23 6 4.0109 -13.4924 -0.4062 24 6 4.3904 -14.9736 -0.3524 25 9 3.2490 -15.7553 -0.5606 26 6 6.2883 -5.8216 -1.2717 27 6 5.5179 -4.5042 -1.1514 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3635 -0.0007 30 1 5.9239 -1.8570 0.8889 31 1 5.9239 -1.8570 -0.8911 32 1 4.6268 -4.3561 1.4202 33 1 6.2315 -3.9629 2.0784 34 1 6.1517 -6.4454 2.1034 35 1 7.4501 -8.1758 -0.6561 36 1 7.1408 -8.1920 1.0967 37 1 4.7329 -8.6007 0.6681 38 1 5.0422 -8.5845 -1.0848 39 1 6.7515 -10.4932 0.1042 40 1 5.9936 -12.8531 -0.9538 41 1 5.6841 -12.8680 0.7990 42 1 3.2760 -13.2768 0.3694 43 1 3.5863 -13.2617 -1.3833 44 1 5.1251 -15.1888 -1.1283 45 1 4.8152 -15.2045 0.6244 46 1 7.3024 -5.6184 -1.6160 47 1 5.7861 -6.4712 -1.9886 48 1 4.4593 -4.7118 -0.9955 49 1 5.6459 -3.9171 -2.0609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160942371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = -141.633576 kcal Electronic energy + Delta-G solvation = -28802.220919 eV Core-core repulsion = 24484.230752 eV Total energy + Delta-G solvation = -4317.990167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.55251 -41.18420 -40.78906 -39.23364 -36.95918 -35.97355 -34.99221 -34.79260 -33.81441 -31.76252 -31.30878 -28.99759 -27.82074 -26.26365 -24.75398 -24.24668 -23.01868 -22.57206 -21.36792 -21.33892 -20.32460 -18.66917 -18.16980 -17.63335 -17.47509 -17.28752 -16.84466 -16.74772 -16.57316 -16.37190 -16.22251 -15.74508 -15.63546 -15.54809 -15.36943 -15.17491 -14.63962 -14.59787 -14.29726 -14.13722 -13.89484 -13.66804 -13.28368 -13.22067 -13.03294 -12.91884 -12.85176 -12.47455 -12.40862 -12.28930 -12.17904 -12.01973 -12.00789 -11.75826 -11.54571 -11.51855 -11.37591 -11.06067 -10.93978 -10.27803 -10.14307 -9.66359 -9.05069 -8.45534 -6.06402 1.27789 1.28679 1.32981 1.42408 1.63161 1.88762 2.19971 2.21100 2.94099 2.99840 3.11420 3.59293 3.74219 3.81084 3.88491 3.91068 4.07462 4.14931 4.18445 4.19848 4.28213 4.33072 4.38252 4.44467 4.47482 4.59763 4.60816 4.67274 4.70804 4.77852 4.81664 4.85802 4.93499 5.00053 5.01807 5.07463 5.13802 5.26362 5.34710 5.42570 5.48243 5.54435 5.90291 5.95064 6.01911 6.19434 6.54093 6.57088 6.84488 7.28926 7.34997 7.91916 8.72167 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.001715 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.654030 B =16319.995649 C =17619.841505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.330 4.330 8 H 0.051 0.949 9 N -0.587 5.587 10 C 0.415 3.585 11 O -0.614 6.614 12 C 0.043 3.957 13 N -0.494 5.494 14 C 0.065 3.935 15 C -0.156 4.156 16 C -0.122 4.122 17 C -0.075 4.075 18 C 0.126 3.874 19 N -0.714 5.714 20 C 0.499 3.501 21 O -0.599 6.599 22 C -0.124 4.124 23 C -0.142 4.142 24 C 0.060 3.940 25 F -0.243 7.243 26 C -0.070 4.070 27 C 0.029 3.971 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.422 0.578 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.549 -20.801 0.719 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.459 4.459 8 H 0.069 0.931 9 N -0.228 5.228 10 C 0.203 3.797 11 O -0.500 6.500 12 C -0.089 4.089 13 N -0.216 5.216 14 C -0.063 4.063 15 C -0.174 4.174 16 C -0.123 4.123 17 C -0.113 4.113 18 C 0.001 3.999 19 N -0.367 5.367 20 C 0.287 3.713 21 O -0.480 6.480 22 C -0.163 4.163 23 C -0.181 4.181 24 C 0.005 3.995 25 F -0.225 7.225 26 C -0.107 4.107 27 C -0.099 4.099 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.260 0.740 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.056 0.944 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.669 -21.175 0.540 32.515 hybrid contribution -1.691 1.229 0.129 2.094 sum 22.978 -19.946 0.669 30.435 Atomic orbital electron populations 1.69815 1.08272 1.29313 1.50078 1.26181 0.96484 1.02902 0.95920 0.85336 0.79522 0.76492 0.79993 1.18109 1.20053 1.15222 1.18994 0.81783 0.94726 1.50423 0.93093 1.42239 1.05756 1.07941 1.66878 1.22377 0.92492 0.83390 0.81425 1.90491 1.71658 1.32098 1.55728 1.22351 0.86995 0.92935 1.06571 1.63065 1.54712 1.00780 1.03033 1.21133 0.98992 0.93450 0.92718 1.22164 1.01338 0.95054 0.98850 1.20898 1.00990 0.95568 0.94822 1.20754 0.96105 0.89609 1.04796 1.21167 0.97655 0.80414 1.00622 1.45883 1.12582 1.05416 1.72831 1.21533 0.84740 0.90050 0.74950 1.90757 1.22269 1.84247 1.50722 1.21563 0.99366 0.87627 1.07783 1.21887 0.98459 0.94702 1.03020 1.22243 0.84280 0.87524 1.05407 1.92730 1.55754 1.77023 1.96950 1.20447 1.01276 0.94011 0.94961 1.22450 0.98321 0.95725 0.93364 0.91131 0.77428 0.86058 0.85902 0.94821 0.88876 0.85807 0.88177 0.88742 0.94191 0.93496 0.74014 0.84886 0.85020 0.92512 0.92393 0.87942 0.88045 0.88684 0.90845 0.94436 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.96 21.66 0.30 -56.79 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 3 Si 0.97 38.96 27.74 68.60 1.90 40.87 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 7 C -0.33 -19.50 10.16 84.04 0.85 -18.64 16 8 H 0.05 3.62 7.39 -2.91 -0.02 3.59 16 9 N -0.59 -27.63 5.09 -306.98 -1.56 -29.19 16 10 C 0.42 18.47 7.11 87.66 0.62 19.10 16 11 O -0.61 -33.14 11.22 -3.06 -0.03 -33.17 16 12 C 0.04 1.33 5.84 85.56 0.50 1.83 16 13 N -0.49 -15.01 4.93 -905.50 -4.47 -19.48 16 14 C 0.06 2.01 5.41 85.39 0.46 2.48 16 15 C -0.16 -4.00 9.50 26.68 0.25 -3.75 16 16 C -0.12 -2.76 5.15 -15.40 -0.08 -2.84 16 17 C -0.08 -1.09 5.38 29.85 0.16 -0.93 16 18 C 0.13 2.52 5.66 86.38 0.49 3.01 16 19 N -0.71 -9.61 5.56 -463.06 -2.57 -12.18 16 20 C 0.50 9.20 7.83 87.66 0.69 9.89 16 21 O -0.60 -18.96 15.98 -3.04 -0.05 -19.01 16 22 C -0.12 -0.91 5.70 29.85 0.17 -0.74 16 23 C -0.14 -1.90 4.96 30.59 0.15 -1.75 16 24 C 0.06 0.51 7.55 71.98 0.54 1.05 16 25 F -0.24 -4.36 17.36 44.97 0.78 -3.58 16 26 C -0.07 -1.68 6.04 29.75 0.18 -1.50 16 27 C 0.03 0.95 4.91 86.27 0.42 1.38 16 28 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 29 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 30 H 0.12 3.03 8.12 -2.39 -0.02 3.01 16 31 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.03 1.39 5.79 -2.39 -0.01 1.38 16 33 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.12 2.64 7.81 -2.91 -0.02 2.61 16 35 H 0.10 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.09 1.01 7.85 -2.39 -0.02 0.99 16 37 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.42 1.81 8.47 -92.71 -0.79 1.03 16 40 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.04 1.61 5.52 -2.39 -0.01 1.60 16 49 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 Total: -1.00 -89.80 398.08 -0.22 -90.02 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.41 Total: 34.39 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.88 Total: 8.13 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -8.30 Total: -117.64 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.08 Total: -52.18 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.90 Total: 40.87 kcal Total: -89.80 -0.22 -90.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160942371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.612 kcal (2) G-P(sol) polarization free energy of solvation -89.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds