Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47429 * 268.37222 * 3 2 1 5 5 H 1.48503 * 109.47026 * 28.37128 * 3 2 1 6 6 H 1.48503 * 109.47073 * 148.37497 * 3 2 1 7 7 C 1.38817 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00006 * 339.83021 * 7 2 1 9 9 N 1.36937 * 120.00076 * 159.83828 * 7 2 1 10 10 C 1.47003 * 121.37310 * 335.33253 * 9 7 2 11 11 C 1.50323 * 109.16781 * 222.97211 * 10 9 7 12 12 C 1.29451 * 123.65266 * 349.02629 * 11 10 9 13 13 C 1.50702 * 117.69631 * 180.86126 * 12 11 10 14 14 C 1.52996 * 109.47213 * 94.99627 * 13 12 11 15 15 N 1.46499 * 109.46838 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00360 * 180.02562 * 15 14 13 17 17 O 1.21293 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00744 * 179.97438 * 16 15 14 19 19 H 1.09007 * 110.71806 * 303.37277 * 18 16 15 20 20 C 1.54421 * 110.81646 * 179.97438 * 18 16 15 21 21 C 1.51055 * 105.14819 * 215.61815 * 20 18 16 22 22 C 1.38631 * 131.51557 * 197.04635 * 21 20 18 23 23 C 1.38209 * 119.09653 * 180.02562 * 22 21 20 24 24 N 1.31882 * 120.71367 * 359.91068 * 23 22 21 25 25 C 1.31833 * 121.78573 * 0.03617 * 24 23 22 26 26 C 1.38343 * 120.75265 * 0.02562 * 25 24 23 27 27 C 1.51187 * 131.26508 * 179.97438 * 26 25 24 28 28 C 1.49969 * 124.60807 * 0.85287 * 12 11 10 29 29 C 1.47335 * 121.37807 * 155.36301 * 9 7 2 30 30 H 0.96999 * 119.99450 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.52524 * 342.88123 * 10 9 7 32 32 H 1.09004 * 109.52044 * 103.00564 * 10 9 7 33 33 H 1.08007 * 118.17360 * 169.00236 * 11 10 9 34 34 H 1.08999 * 109.46454 * 215.00320 * 13 12 11 35 35 H 1.09002 * 109.46571 * 334.99604 * 13 12 11 36 36 H 1.08999 * 109.47070 * 299.99858 * 14 13 12 37 37 H 1.08993 * 109.47221 * 60.00525 * 14 13 12 38 38 H 0.97004 * 120.00179 * 0.02562 * 15 14 13 39 39 H 1.08998 * 110.30460 * 334.53374 * 20 18 16 40 40 H 1.08993 * 110.30288 * 96.69430 * 20 18 16 41 41 H 1.08007 * 120.45173 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.63918 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.62756 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.30166 * 44.03245 * 27 26 25 45 45 H 1.09002 * 110.29613 * 281.89673 * 27 26 25 46 46 H 1.08998 * 109.31483 * 220.71845 * 28 12 11 47 47 H 1.09009 * 109.31011 * 101.29058 * 28 12 11 48 48 H 1.09003 * 109.77768 * 237.78683 * 29 9 7 49 49 H 1.08997 * 109.77555 * 358.59002 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5323 2.0265 -1.3995 5 1 1.4309 2.6623 0.6653 6 1 3.5302 1.4502 0.7342 7 6 2.0102 -1.2022 -0.0005 8 1 1.5198 -2.1090 0.3216 9 7 3.3167 -1.2385 -0.4093 10 6 3.8603 -0.2256 -1.3256 11 6 4.7175 -0.9032 -2.3579 12 6 5.0860 -2.1419 -2.2834 13 6 5.9631 -2.6792 -3.3848 14 6 7.4302 -2.5814 -2.9620 15 7 8.2828 -3.1031 -4.0330 16 6 9.6220 -3.1175 -3.8818 17 8 10.1213 -2.6981 -2.8591 18 6 10.4990 -3.6548 -4.9832 19 1 10.2214 -4.6791 -5.2322 20 6 11.9895 -3.5704 -4.5882 21 6 12.7201 -3.2495 -5.8708 22 6 14.0587 -3.3525 -6.2162 23 6 14.4557 -2.9798 -7.4865 24 7 13.5771 -2.5332 -8.3629 25 6 12.2968 -2.4235 -8.0684 26 6 11.8261 -2.7764 -6.8163 27 6 10.4327 -2.7477 -6.2302 28 6 4.7016 -3.0799 -1.1782 29 6 4.2353 -2.2946 0.0505 30 1 -0.4849 0.8401 0.0004 31 1 3.0406 0.2968 -1.8188 32 1 4.4617 0.4888 -0.7634 33 1 5.0440 -0.3244 -3.2093 34 1 5.7086 -3.7217 -3.5759 35 1 5.8065 -2.0949 -4.2916 36 1 7.6845 -1.5388 -2.7710 37 1 7.5868 -3.1656 -2.0553 38 1 7.8835 -3.4383 -4.8511 39 1 12.1427 -2.7769 -3.8569 40 1 12.3293 -4.5256 -4.1880 41 1 14.7818 -3.7183 -5.5021 42 1 15.4964 -3.0561 -7.7648 43 1 11.6074 -2.0538 -8.8131 44 1 9.7128 -3.1427 -6.9470 45 1 10.1637 -1.7308 -5.9442 46 1 5.5623 -3.6923 -0.9094 47 1 3.8942 -3.7278 -1.5197 48 1 5.0943 -1.8450 0.5488 49 1 3.7159 -2.9611 0.7390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161213051.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = 33.579536 kcal Electronic energy + Delta-G solvation = -28172.432076 eV Core-core repulsion = 24292.808944 eV Total energy + Delta-G solvation = -3879.623132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40119 -39.92150 -38.28406 -36.79015 -35.64261 -33.73522 -32.41005 -31.66509 -30.71424 -30.38377 -29.06715 -28.17379 -25.72110 -24.39817 -23.47552 -22.72760 -22.21268 -22.00126 -21.11047 -20.29990 -17.93865 -17.72025 -17.20112 -16.62902 -16.43415 -15.99612 -15.63884 -15.54843 -15.28964 -15.09096 -14.43602 -14.26985 -14.11877 -14.00027 -13.84283 -13.63958 -13.48685 -13.35405 -12.81053 -12.71148 -12.44683 -12.31224 -12.08696 -11.90311 -11.83928 -11.79897 -11.70487 -11.40713 -11.26064 -10.77588 -10.34207 -10.25063 -10.19380 -9.94521 -9.83476 -9.79043 -9.48635 -9.35958 -9.32520 -8.65869 -8.30946 -7.01548 -5.94659 -3.29373 0.65155 0.80306 2.28027 2.54254 2.91087 3.30801 3.33015 3.48059 3.50151 3.68549 3.85543 4.07888 4.32337 4.37476 4.47414 4.52537 4.58419 4.73736 4.89860 4.92874 4.93696 4.97758 5.02497 5.11628 5.15076 5.21093 5.34905 5.37523 5.41193 5.44452 5.55895 5.58336 5.60157 5.78646 5.85995 5.87616 5.95263 6.00036 6.14426 6.18697 6.22611 6.24019 6.40790 6.49346 6.59381 6.76906 7.06360 7.17964 7.42894 7.53235 7.89583 7.90926 8.31804 8.90983 9.71070 10.10305 11.21577 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.001725 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.350521 B =16229.881717 C =16584.694385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.088 0.912 9 N -0.607 5.607 10 C 0.145 3.855 11 C -0.148 4.148 12 C -0.124 4.124 13 C -0.094 4.094 14 C 0.123 3.877 15 N -0.727 5.727 16 C 0.521 3.479 17 O -0.535 6.535 18 C -0.111 4.111 19 H 0.110 0.890 20 C -0.072 4.072 21 C -0.049 4.049 22 C -0.159 4.159 23 C 0.097 3.903 24 N -0.485 5.485 25 C 0.115 3.885 26 C -0.151 4.151 27 C -0.066 4.066 28 C -0.096 4.096 29 C 0.146 3.854 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.028 0.972 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.885 -9.664 -15.735 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.382 4.382 8 H 0.105 0.895 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.168 4.168 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.000 4.000 15 N -0.378 5.378 16 C 0.306 3.694 17 O -0.411 6.411 18 C -0.132 4.132 19 H 0.128 0.872 20 C -0.109 4.109 21 C -0.057 4.057 22 C -0.179 4.179 23 C -0.059 4.059 24 N -0.193 5.193 25 C -0.042 4.042 26 C -0.153 4.153 27 C -0.104 4.104 28 C -0.134 4.134 29 C 0.020 3.980 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.176 0.824 43 H 0.172 0.828 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.344 -9.026 -15.781 32.008 hybrid contribution -0.051 0.612 0.312 0.689 sum 26.293 -8.414 -15.469 31.645 Atomic orbital electron populations 1.69830 1.05635 1.26513 1.53371 1.25216 0.95249 0.97514 0.99821 0.87013 0.79593 0.84668 0.77280 1.21502 1.23123 1.19817 1.18906 0.84447 0.94874 1.40014 0.89473 1.44430 1.08630 1.29231 1.50814 1.20306 0.95763 0.91892 0.90011 1.22633 0.98840 0.95878 0.99447 1.20309 0.99600 0.95488 0.97076 1.20927 0.92427 1.01955 0.97851 1.21450 0.88780 0.99838 0.89942 1.46072 1.06158 1.64598 1.20950 1.20235 0.82599 0.78502 0.88069 1.90735 1.73984 1.46745 1.29642 1.22023 0.95471 1.01385 0.94357 0.87153 1.20973 0.91024 1.04269 0.94606 1.20889 0.93611 0.95094 0.96105 1.21664 0.95354 1.02576 0.98326 1.22740 0.99448 0.94349 0.89408 1.67743 1.02539 1.13593 1.35444 1.22255 0.92097 0.95783 0.94089 1.21460 0.96988 1.01365 0.95493 1.20895 0.93716 1.00704 0.95057 1.20796 0.99811 0.97127 0.95697 1.20993 0.92873 0.90794 0.93386 0.92776 0.90053 0.94627 0.88451 0.90996 0.91236 0.91229 0.91052 0.76526 0.87486 0.89505 0.84708 0.82438 0.82790 0.89262 0.89229 0.92302 0.91206 0.95418 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 2 C 0.02 0.59 5.26 -17.43 -0.09 0.50 16 3 Si 0.88 22.41 24.17 -169.99 -4.11 18.30 16 4 H -0.29 -6.95 6.48 56.52 0.37 -6.59 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.84 6.59 56.52 0.37 -6.47 16 7 C -0.25 -7.12 10.14 -15.06 -0.15 -7.28 16 8 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 9 N -0.61 -14.49 2.81 -173.68 -0.49 -14.97 16 10 C 0.15 3.18 4.39 -5.10 -0.02 3.16 16 11 C -0.15 -2.59 9.47 -35.78 -0.34 -2.93 16 12 C -0.12 -1.91 5.11 -100.99 -0.52 -2.42 16 13 C -0.09 -1.02 5.32 -27.88 -0.15 -1.17 16 14 C 0.12 1.32 5.66 -4.04 -0.02 1.30 16 15 N -0.73 -5.95 5.56 -60.30 -0.33 -6.28 16 16 C 0.52 4.98 7.04 -10.99 -0.08 4.90 16 17 O -0.53 -7.46 15.50 5.55 0.09 -7.37 16 18 C -0.11 -0.71 3.46 -90.32 -0.31 -1.02 16 19 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 20 C -0.07 -0.52 6.10 -26.96 -0.16 -0.68 16 21 C -0.05 -0.37 6.20 -104.22 -0.65 -1.02 16 22 C -0.16 -1.08 10.12 -39.45 -0.40 -1.48 16 23 C 0.10 0.70 11.19 -17.54 -0.20 0.51 16 24 N -0.48 -4.38 10.36 -13.22 -0.14 -4.52 16 25 C 0.11 0.89 11.19 -17.51 -0.20 0.69 16 26 C -0.15 -1.10 6.19 -104.26 -0.64 -1.75 16 27 C -0.07 -0.37 6.31 -26.94 -0.17 -0.54 16 28 C -0.10 -1.53 5.95 -28.19 -0.17 -1.70 16 29 C 0.15 2.84 6.58 -3.53 -0.02 2.82 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.08 1.94 5.05 -51.93 -0.26 1.68 16 32 H 0.04 0.80 6.38 -51.93 -0.33 0.47 16 33 H 0.10 1.46 7.73 -52.48 -0.41 1.06 16 34 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.07 0.69 7.78 -51.93 -0.40 0.29 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.40 2.08 8.47 -40.82 -0.35 1.73 16 39 H 0.11 0.98 6.98 -51.93 -0.36 0.62 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.57 7.89 -51.93 -0.41 0.16 16 46 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 47 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -34.76 390.12 -10.24 -45.00 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.62 Total: -0.80 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -4.29 Total: -8.11 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.18 Total: -52.90 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.11 Total: 18.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.76 -10.24 -45.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161213051.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.583 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds