Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47429 * 268.37222 * 3 2 1 5 5 H 1.48503 * 109.47026 * 28.37128 * 3 2 1 6 6 H 1.48503 * 109.47073 * 148.37497 * 3 2 1 7 7 C 1.38817 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00006 * 339.83021 * 7 2 1 9 9 N 1.36937 * 120.00076 * 159.83828 * 7 2 1 10 10 C 1.47003 * 121.37310 * 335.33253 * 9 7 2 11 11 C 1.50323 * 109.16781 * 222.97211 * 10 9 7 12 12 C 1.29451 * 123.65266 * 349.02629 * 11 10 9 13 13 C 1.50702 * 117.69631 * 180.86126 * 12 11 10 14 14 C 1.52996 * 109.47213 * 94.99627 * 13 12 11 15 15 N 1.46499 * 109.46838 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00360 * 180.02562 * 15 14 13 17 17 O 1.21293 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00744 * 179.97438 * 16 15 14 19 19 H 1.09007 * 110.71806 * 303.37277 * 18 16 15 20 20 C 1.54421 * 110.81646 * 179.97438 * 18 16 15 21 21 C 1.51055 * 105.14819 * 215.61815 * 20 18 16 22 22 C 1.38631 * 131.51557 * 197.04635 * 21 20 18 23 23 C 1.38209 * 119.09653 * 180.02562 * 22 21 20 24 24 N 1.31882 * 120.71367 * 359.91068 * 23 22 21 25 25 C 1.31833 * 121.78573 * 0.03617 * 24 23 22 26 26 C 1.38343 * 120.75265 * 0.02562 * 25 24 23 27 27 C 1.51187 * 131.26508 * 179.97438 * 26 25 24 28 28 C 1.49969 * 124.60807 * 0.85287 * 12 11 10 29 29 C 1.47335 * 121.37807 * 155.36301 * 9 7 2 30 30 H 0.96999 * 119.99450 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.52524 * 342.88123 * 10 9 7 32 32 H 1.09004 * 109.52044 * 103.00564 * 10 9 7 33 33 H 1.08007 * 118.17360 * 169.00236 * 11 10 9 34 34 H 1.08999 * 109.46454 * 215.00320 * 13 12 11 35 35 H 1.09002 * 109.46571 * 334.99604 * 13 12 11 36 36 H 1.08999 * 109.47070 * 299.99858 * 14 13 12 37 37 H 1.08993 * 109.47221 * 60.00525 * 14 13 12 38 38 H 0.97004 * 120.00179 * 0.02562 * 15 14 13 39 39 H 1.08998 * 110.30460 * 334.53374 * 20 18 16 40 40 H 1.08993 * 110.30288 * 96.69430 * 20 18 16 41 41 H 1.08007 * 120.45173 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.63918 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.62756 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.30166 * 44.03245 * 27 26 25 45 45 H 1.09002 * 110.29613 * 281.89673 * 27 26 25 46 46 H 1.08998 * 109.31483 * 220.71845 * 28 12 11 47 47 H 1.09009 * 109.31011 * 101.29058 * 28 12 11 48 48 H 1.09003 * 109.77768 * 237.78683 * 29 9 7 49 49 H 1.08997 * 109.77555 * 358.59002 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5323 2.0265 -1.3995 5 1 1.4309 2.6623 0.6653 6 1 3.5302 1.4502 0.7342 7 6 2.0102 -1.2022 -0.0005 8 1 1.5198 -2.1090 0.3216 9 7 3.3167 -1.2385 -0.4093 10 6 3.8603 -0.2256 -1.3256 11 6 4.7175 -0.9032 -2.3579 12 6 5.0860 -2.1419 -2.2834 13 6 5.9631 -2.6792 -3.3848 14 6 7.4302 -2.5814 -2.9620 15 7 8.2828 -3.1031 -4.0330 16 6 9.6220 -3.1175 -3.8818 17 8 10.1213 -2.6981 -2.8591 18 6 10.4990 -3.6548 -4.9832 19 1 10.2214 -4.6791 -5.2322 20 6 11.9895 -3.5704 -4.5882 21 6 12.7201 -3.2495 -5.8708 22 6 14.0587 -3.3525 -6.2162 23 6 14.4557 -2.9798 -7.4865 24 7 13.5771 -2.5332 -8.3629 25 6 12.2968 -2.4235 -8.0684 26 6 11.8261 -2.7764 -6.8163 27 6 10.4327 -2.7477 -6.2302 28 6 4.7016 -3.0799 -1.1782 29 6 4.2353 -2.2946 0.0505 30 1 -0.4849 0.8401 0.0004 31 1 3.0406 0.2968 -1.8188 32 1 4.4617 0.4888 -0.7634 33 1 5.0440 -0.3244 -3.2093 34 1 5.7086 -3.7217 -3.5759 35 1 5.8065 -2.0949 -4.2916 36 1 7.6845 -1.5388 -2.7710 37 1 7.5868 -3.1656 -2.0553 38 1 7.8835 -3.4383 -4.8511 39 1 12.1427 -2.7769 -3.8569 40 1 12.3293 -4.5256 -4.1880 41 1 14.7818 -3.7183 -5.5021 42 1 15.4964 -3.0561 -7.7648 43 1 11.6074 -2.0538 -8.8131 44 1 9.7128 -3.1427 -6.9470 45 1 10.1637 -1.7308 -5.9442 46 1 5.5623 -3.6923 -0.9094 47 1 3.8942 -3.7278 -1.5197 48 1 5.0943 -1.8450 0.5488 49 1 3.7159 -2.9611 0.7390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161213051.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = 10.720631 kcal Electronic energy + Delta-G solvation = -28173.423312 eV Core-core repulsion = 24292.808944 eV Total energy + Delta-G solvation = -3880.614368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94667 -40.64149 -39.68985 -37.41935 -36.73210 -35.14252 -33.51951 -32.87955 -31.91625 -31.42438 -30.18615 -28.71277 -27.13807 -25.36775 -24.96515 -23.78372 -22.76544 -22.68710 -22.51475 -21.00823 -19.62749 -18.47942 -17.80254 -17.61449 -17.39084 -17.15445 -16.88765 -16.49232 -16.14345 -15.89407 -15.70680 -15.54600 -15.33268 -15.13605 -14.70476 -14.54063 -14.33379 -14.25628 -13.96572 -13.88769 -13.72247 -13.46868 -13.31792 -13.05133 -12.79169 -12.64884 -12.57512 -12.35093 -12.30009 -12.23044 -12.12623 -11.98010 -11.50954 -11.37014 -10.96725 -10.72181 -10.48818 -10.36601 -10.10496 -9.85005 -9.64386 -8.98458 -8.17479 -5.48068 0.15482 0.27047 1.26862 1.32411 1.39355 1.47826 1.57330 2.16699 2.39958 2.81208 3.04672 3.18851 3.30678 3.34907 3.62667 3.79966 3.89878 3.92256 3.99148 4.03640 4.10956 4.11775 4.27577 4.30702 4.42666 4.49250 4.50417 4.52781 4.60369 4.65184 4.68125 4.70216 4.79061 4.84597 4.88814 4.95251 4.96475 4.99176 5.04823 5.08606 5.09075 5.16802 5.32855 5.37258 5.43746 5.73219 5.75982 5.83505 6.06616 6.18985 6.55284 6.87273 7.01803 7.23937 7.59539 8.02970 9.02478 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.001725 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.350521 B =16229.881717 C =16584.694385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.056 0.944 9 N -0.623 5.623 10 C 0.141 3.859 11 C -0.175 4.175 12 C -0.109 4.109 13 C -0.081 4.081 14 C 0.130 3.870 15 N -0.711 5.711 16 C 0.520 3.480 17 O -0.584 6.584 18 C -0.101 4.101 19 H 0.139 0.861 20 C -0.071 4.071 21 C -0.063 4.063 22 C -0.163 4.163 23 C 0.086 3.914 24 N -0.513 5.513 25 C 0.102 3.898 26 C -0.155 4.155 27 C -0.060 4.060 28 C -0.092 4.092 29 C 0.136 3.864 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.419 0.581 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.154 0.846 42 H 0.179 0.821 43 H 0.172 0.828 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.036 0.964 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.087 -10.826 -17.922 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.231 4.231 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.239 1.239 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.074 0.926 9 N -0.348 5.348 10 C 0.017 3.983 11 C -0.194 4.194 12 C -0.109 4.109 13 C -0.118 4.118 14 C 0.007 3.993 15 N -0.364 5.364 16 C 0.308 3.692 17 O -0.464 6.464 18 C -0.122 4.122 19 H 0.157 0.843 20 C -0.108 4.108 21 C -0.071 4.071 22 C -0.182 4.182 23 C -0.070 4.070 24 N -0.221 5.221 25 C -0.054 4.054 26 C -0.157 4.157 27 C -0.098 4.098 28 C -0.130 4.130 29 C 0.011 3.989 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.257 0.743 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.171 0.829 42 H 0.196 0.804 43 H 0.189 0.811 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 28.579 -10.217 -18.016 35.294 hybrid contribution -0.681 0.836 1.045 1.502 sum 27.898 -9.380 -16.971 33.975 Atomic orbital electron populations 1.69955 1.07227 1.27151 1.56052 1.25823 0.95862 1.00776 1.00666 0.85986 0.78013 0.80372 0.78067 1.19583 1.23873 1.19468 1.18871 0.86277 0.93723 1.38505 0.92602 1.44579 1.07835 1.30674 1.51715 1.20257 0.95603 0.91791 0.90678 1.22486 1.00091 0.97121 0.99747 1.20649 0.98307 0.94545 0.97439 1.20829 0.91106 1.03325 0.96555 1.21183 0.89015 0.98780 0.90370 1.45876 1.05596 1.63819 1.21061 1.20737 0.82978 0.77526 0.88003 1.90725 1.74879 1.48939 1.31832 1.22014 0.94018 1.02826 0.93335 0.84297 1.20929 0.91926 1.03939 0.94036 1.21071 0.94175 0.95621 0.96281 1.21921 0.95646 1.02080 0.98581 1.23141 1.00314 0.94044 0.89476 1.67752 1.03391 1.14532 1.36466 1.22579 0.92130 0.95908 0.94832 1.21637 0.97816 1.00967 0.95290 1.20913 0.93508 1.00290 0.95068 1.20751 1.00966 0.97054 0.94269 1.21225 0.92244 0.90091 0.95302 0.92959 0.92504 0.95110 0.85680 0.88749 0.89335 0.93009 0.92184 0.74319 0.89849 0.88512 0.82856 0.80402 0.81104 0.86278 0.89979 0.88869 0.91494 0.94554 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 2 C -0.04 -2.18 5.26 84.86 0.45 -1.73 16 3 Si 0.95 47.32 24.17 68.60 1.66 48.98 16 4 H -0.27 -12.56 6.48 99.48 0.64 -11.91 16 5 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.27 -13.14 6.59 99.48 0.66 -12.48 16 7 C -0.24 -14.05 10.14 84.03 0.85 -13.19 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.62 -29.74 2.81 -703.39 -1.97 -31.71 16 10 C 0.14 6.07 4.39 85.42 0.37 6.45 16 11 C -0.18 -5.72 9.47 27.11 0.26 -5.46 16 12 C -0.11 -3.00 5.11 -15.13 -0.08 -3.07 16 13 C -0.08 -1.39 5.32 29.85 0.16 -1.23 16 14 C 0.13 2.37 5.66 86.38 0.49 2.86 16 15 N -0.71 -9.02 5.56 -463.08 -2.57 -11.59 16 16 C 0.52 8.67 7.04 87.66 0.62 9.28 16 17 O -0.58 -15.71 15.50 -3.07 -0.05 -15.76 16 18 C -0.10 -1.00 3.46 -10.60 -0.04 -1.03 16 19 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 20 C -0.07 -0.92 6.10 30.44 0.19 -0.74 16 21 C -0.06 -0.86 6.20 -19.61 -0.12 -0.98 16 22 C -0.16 -1.97 10.12 22.36 0.23 -1.74 16 23 C 0.09 1.14 11.19 84.68 0.95 2.09 16 24 N -0.51 -8.67 10.36 -195.75 -2.03 -10.70 16 25 C 0.10 1.41 11.19 84.72 0.95 2.36 16 26 C -0.16 -1.94 6.19 -19.63 -0.12 -2.07 16 27 C -0.06 -0.49 6.31 30.46 0.19 -0.30 16 28 C -0.09 -2.71 5.95 29.65 0.18 -2.53 16 29 C 0.14 5.20 6.58 86.25 0.57 5.76 16 30 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.06 2.69 5.05 -2.39 -0.01 2.68 16 32 H 0.03 1.35 6.38 -2.38 -0.02 1.34 16 33 H 0.13 3.35 7.73 -2.91 -0.02 3.33 16 34 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.09 1.28 7.78 -2.39 -0.02 1.27 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.42 2.28 8.47 -92.71 -0.79 1.49 16 39 H 0.08 1.51 6.98 -2.39 -0.02 1.50 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.08 0.84 7.89 -2.39 -0.02 0.82 16 46 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 47 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 Total: -1.00 -79.13 390.12 1.48 -77.65 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.06 Total: 8.74 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.08 Total: -5.27 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -6.27 Total: -114.34 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.05 Total: -15.76 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.66 Total: 48.98 kcal Total: -79.13 1.48 -77.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161213051.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.372 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds