Wall clock time and date at job start Sat Apr 11 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48496 * 109.47357 * 270.00449 * 3 2 1 5 5 H 1.48495 * 109.47119 * 30.00470 * 3 2 1 6 6 H 1.48500 * 109.46562 * 150.00184 * 3 2 1 7 7 C 1.38947 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00346 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99950 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99868 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47113 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00199 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.63883 * 31.86151 * 14 13 12 16 16 C 1.55149 * 110.71916 * 268.52497 * 14 13 12 17 17 C 1.55132 * 101.48552 * 205.96615 * 16 14 13 18 18 N 1.47432 * 104.71949 * 37.29532 * 17 16 14 19 19 C 1.34779 * 125.64828 * 155.81514 * 18 17 16 20 20 O 1.21273 * 120.00093 * 179.69260 * 19 18 17 21 21 C 1.50703 * 119.99944 * 359.69421 * 19 18 17 22 22 C 1.53006 * 109.47126 * 59.99710 * 21 19 18 23 23 C 1.52997 * 109.47127 * 179.97438 * 22 21 19 24 24 C 1.53000 * 109.47060 * 300.00449 * 23 22 21 25 25 F 1.39904 * 109.47059 * 299.99554 * 24 23 22 26 26 C 1.52996 * 109.47328 * 60.00126 * 24 23 22 27 27 C 1.52997 * 109.47084 * 179.97438 * 21 19 18 28 28 C 1.47021 * 108.70207 * 335.55459 * 18 17 16 29 29 H 0.97008 * 119.99933 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99409 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47505 * 59.99714 * 12 10 9 32 32 H 1.09000 * 109.47254 * 299.99248 * 12 10 9 33 33 H 1.00901 * 110.99971 * 56.04219 * 13 12 10 34 34 H 1.08993 * 111.00655 * 324.20719 * 16 14 13 35 35 H 1.09001 * 111.00730 * 88.02459 * 16 14 13 36 36 H 1.08995 * 110.49894 * 278.45935 * 17 16 14 37 37 H 1.09000 * 110.34357 * 156.05814 * 17 16 14 38 38 H 1.09001 * 109.46980 * 299.99941 * 21 19 18 39 39 H 1.08998 * 109.46505 * 59.99690 * 22 21 19 40 40 H 1.08996 * 109.46884 * 300.00571 * 22 21 19 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 22 21 43 43 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 44 44 H 1.08992 * 109.47554 * 59.99639 * 26 24 23 45 45 H 1.09004 * 109.47108 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.47045 * 60.00033 * 27 21 19 47 47 H 1.09001 * 109.47375 * 299.99958 * 27 21 19 48 48 H 1.08998 * 109.88338 * 120.70284 * 28 18 17 49 49 H 1.08998 * 109.87972 * 241.71610 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.4980 -7.2708 -0.0016 15 1 0.5531 -7.1955 -0.5397 16 6 1.2697 -7.7714 1.4491 17 6 1.1886 -9.3060 1.2372 18 7 2.1817 -9.5920 0.1857 19 6 2.7951 -10.7753 -0.0146 20 8 3.5947 -10.8986 -0.9180 21 6 2.4873 -11.9452 0.8841 22 6 0.9973 -12.2808 0.7920 23 6 0.6849 -13.4690 1.7039 24 6 1.5089 -14.6805 1.2632 25 9 1.1856 -15.0089 -0.0577 26 6 2.9987 -14.3449 1.3554 27 6 3.3107 -13.1571 0.4436 28 6 2.3875 -8.3743 -0.6121 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6173 -4.9205 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 2.8332 -5.9128 0.7797 34 1 2.1098 -7.5061 2.0907 35 1 0.3344 -7.3842 1.8534 36 1 0.1911 -9.5933 0.9049 37 1 1.4486 -9.8298 2.1570 38 1 2.7390 -11.6889 1.9132 39 1 0.7456 -12.5370 -0.2371 40 1 0.4104 -11.4175 1.1054 41 1 -0.3765 -13.7084 1.6379 42 1 0.9368 -13.2131 2.7331 43 1 1.2859 -15.5271 1.9127 44 1 3.2506 -14.0891 2.3845 45 1 3.5857 -15.2082 1.0419 46 1 4.3722 -12.9182 0.5089 47 1 3.0586 -13.4132 -0.5854 48 1 3.4343 -8.0739 -0.5668 49 1 2.0986 -8.5561 -1.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185423807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:33 Heat of formation + Delta-G solvation = -132.247182 kcal Electronic energy + Delta-G solvation = -29633.019591 eV Core-core repulsion = 25315.436448 eV Total energy + Delta-G solvation = -4317.583143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.01649 -40.65003 -38.72059 -37.95215 -37.14221 -34.81661 -33.83004 -31.66758 -31.28583 -31.21366 -30.41688 -28.87234 -26.27318 -24.63484 -23.75466 -23.21500 -22.81633 -20.99613 -20.31228 -19.42337 -19.31235 -17.94784 -17.40338 -16.92590 -16.61055 -16.05682 -15.93165 -15.77579 -15.62861 -15.27900 -14.61306 -14.54216 -14.12728 -13.92499 -13.87326 -13.73325 -13.65190 -13.31953 -13.03096 -12.82278 -12.77007 -12.53026 -12.36188 -12.32027 -12.25498 -12.03469 -11.67564 -11.57337 -11.49655 -11.40982 -11.17794 -11.06405 -10.99509 -10.83368 -10.51798 -10.41007 -10.24072 -9.86694 -9.53473 -8.82683 -8.51930 -8.12813 -7.98870 -6.44232 -3.85062 2.45104 2.71834 3.16607 3.25477 3.31209 3.87015 3.92768 3.99276 4.00518 4.13610 4.20085 4.29339 4.34332 4.45043 4.51726 4.57747 4.71601 4.78600 4.80986 4.89439 4.94038 5.04690 5.07588 5.16554 5.20639 5.24096 5.24798 5.34028 5.42167 5.48886 5.54539 5.61145 5.68234 5.70853 5.72742 5.78671 5.84024 5.91052 5.94532 5.98166 6.10928 6.23491 7.11936 7.31485 7.53083 7.54276 7.99416 8.03605 8.58277 9.15436 9.51215 10.02499 10.73392 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.001665 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.659961 B =16816.368206 C =17170.950826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.658 5.658 14 C 0.080 3.920 15 H 0.094 0.906 16 C -0.168 4.168 17 C 0.102 3.898 18 N -0.618 5.618 19 C 0.532 3.468 20 O -0.536 6.536 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.143 4.143 24 C 0.089 3.911 25 F -0.212 7.212 26 C -0.146 4.146 27 C -0.101 4.101 28 C 0.115 3.885 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.354 0.646 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -28.297 7.534 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.290 5.290 14 C -0.032 4.032 15 H 0.112 0.888 16 C -0.208 4.208 17 C -0.022 4.022 18 N -0.353 5.353 19 C 0.320 3.680 20 O -0.412 6.412 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.181 4.181 24 C 0.053 3.947 25 F -0.192 7.192 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.174 0.826 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.460 -28.234 6.307 29.034 hybrid contribution -0.707 0.910 0.924 1.477 sum -3.167 -27.324 7.231 28.442 Atomic orbital electron populations 1.69609 1.05939 1.28183 1.50556 1.25262 0.95643 0.99743 0.97270 0.85850 0.79211 0.80749 0.78444 1.20360 1.20936 1.19425 1.19709 0.93397 0.82215 1.47616 0.87900 1.41856 1.09194 1.04599 1.64295 1.19785 0.88395 0.84709 0.84650 1.90534 1.13751 1.87028 1.55374 1.21702 0.94264 0.90776 1.01298 1.59953 1.18381 0.99133 1.51518 1.22606 0.96854 0.89554 0.94165 0.88792 1.23650 1.03566 0.94669 0.98918 1.22419 0.92406 0.96245 0.91082 1.48503 1.42769 1.10896 1.33132 1.20267 0.80146 0.82452 0.85117 1.90722 1.34570 1.83033 1.32918 1.21313 0.97352 0.93754 0.99886 1.21655 0.94019 0.98582 1.01492 1.22126 1.00774 0.94674 1.00517 1.21590 0.95684 0.97949 0.79491 1.92815 1.93996 1.93967 1.38469 1.22152 0.94998 0.99623 1.01560 1.21312 1.00195 0.92089 1.00330 1.21923 1.01419 0.82677 0.94804 0.91860 0.77458 0.89444 0.93653 0.82558 0.90042 0.89558 0.90862 0.90524 0.88538 0.90679 0.90242 0.90324 0.89853 0.89939 0.90025 0.90350 0.90588 0.90440 0.90187 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 10 C 0.44 10.11 7.82 -10.99 -0.09 10.03 16 11 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 12 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 13 N -0.66 -9.96 5.93 -106.06 -0.63 -10.59 16 14 C 0.08 0.89 3.27 -65.88 -0.22 0.67 16 15 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 16 C -0.17 -1.41 6.68 -24.47 -0.16 -1.58 16 17 C 0.10 0.73 5.14 -2.40 -0.01 0.72 16 18 N -0.62 -6.49 3.32 -170.38 -0.57 -7.05 16 19 C 0.53 6.26 7.22 -10.98 -0.08 6.18 16 20 O -0.54 -8.60 16.31 5.56 0.09 -8.51 16 21 C -0.10 -0.80 1.88 -91.77 -0.17 -0.97 16 22 C -0.12 -0.77 4.89 -26.73 -0.13 -0.90 16 23 C -0.14 -0.66 5.72 -26.73 -0.15 -0.81 16 24 C 0.09 0.50 4.12 -26.73 -0.11 0.39 16 25 F -0.21 -1.91 16.04 2.25 0.04 -1.88 16 26 C -0.15 -0.81 5.72 -26.76 -0.15 -0.96 16 27 C -0.10 -0.84 4.37 -26.76 -0.12 -0.96 16 28 C 0.11 1.41 6.62 -3.07 -0.02 1.39 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 31 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.35 5.57 7.91 -39.29 -0.31 5.26 16 34 H 0.08 0.74 7.77 -51.93 -0.40 0.33 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.43 7.08 -51.93 -0.37 0.06 16 37 H 0.08 0.41 7.34 -51.93 -0.38 0.03 16 38 H 0.10 0.59 7.85 -51.93 -0.41 0.18 16 39 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 40 H 0.08 0.42 4.98 -51.93 -0.26 0.16 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.08 0.81 7.76 -51.93 -0.40 0.41 16 48 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -33.93 390.27 -8.96 -42.89 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.82 Total: 10.40 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.68 Total: 6.09 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.53 Total: -55.19 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.18 Total: -24.08 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.93 -8.96 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185423807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.361 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds