Wall clock time and date at job start Sat Apr 11 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48496 * 109.47357 * 270.00449 * 3 2 1 5 5 H 1.48495 * 109.47119 * 30.00470 * 3 2 1 6 6 H 1.48500 * 109.46562 * 150.00184 * 3 2 1 7 7 C 1.38947 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00346 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99950 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99868 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47113 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00199 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.63883 * 31.86151 * 14 13 12 16 16 C 1.55149 * 110.71916 * 268.52497 * 14 13 12 17 17 C 1.55132 * 101.48552 * 205.96615 * 16 14 13 18 18 N 1.47432 * 104.71949 * 37.29532 * 17 16 14 19 19 C 1.34779 * 125.64828 * 155.81514 * 18 17 16 20 20 O 1.21273 * 120.00093 * 179.69260 * 19 18 17 21 21 C 1.50703 * 119.99944 * 359.69421 * 19 18 17 22 22 C 1.53006 * 109.47126 * 59.99710 * 21 19 18 23 23 C 1.52997 * 109.47127 * 179.97438 * 22 21 19 24 24 C 1.53000 * 109.47060 * 300.00449 * 23 22 21 25 25 F 1.39904 * 109.47059 * 299.99554 * 24 23 22 26 26 C 1.52996 * 109.47328 * 60.00126 * 24 23 22 27 27 C 1.52997 * 109.47084 * 179.97438 * 21 19 18 28 28 C 1.47021 * 108.70207 * 335.55459 * 18 17 16 29 29 H 0.97008 * 119.99933 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99409 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47505 * 59.99714 * 12 10 9 32 32 H 1.09000 * 109.47254 * 299.99248 * 12 10 9 33 33 H 1.00901 * 110.99971 * 56.04219 * 13 12 10 34 34 H 1.08993 * 111.00655 * 324.20719 * 16 14 13 35 35 H 1.09001 * 111.00730 * 88.02459 * 16 14 13 36 36 H 1.08995 * 110.49894 * 278.45935 * 17 16 14 37 37 H 1.09000 * 110.34357 * 156.05814 * 17 16 14 38 38 H 1.09001 * 109.46980 * 299.99941 * 21 19 18 39 39 H 1.08998 * 109.46505 * 59.99690 * 22 21 19 40 40 H 1.08996 * 109.46884 * 300.00571 * 22 21 19 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 22 21 43 43 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 44 44 H 1.08992 * 109.47554 * 59.99639 * 26 24 23 45 45 H 1.09004 * 109.47108 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.47045 * 60.00033 * 27 21 19 47 47 H 1.09001 * 109.47375 * 299.99958 * 27 21 19 48 48 H 1.08998 * 109.88338 * 120.70284 * 28 18 17 49 49 H 1.08998 * 109.87972 * 241.71610 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.4980 -7.2708 -0.0016 15 1 0.5531 -7.1955 -0.5397 16 6 1.2697 -7.7714 1.4491 17 6 1.1886 -9.3060 1.2372 18 7 2.1817 -9.5920 0.1857 19 6 2.7951 -10.7753 -0.0146 20 8 3.5947 -10.8986 -0.9180 21 6 2.4873 -11.9452 0.8841 22 6 0.9973 -12.2808 0.7920 23 6 0.6849 -13.4690 1.7039 24 6 1.5089 -14.6805 1.2632 25 9 1.1856 -15.0089 -0.0577 26 6 2.9987 -14.3449 1.3554 27 6 3.3107 -13.1571 0.4436 28 6 2.3875 -8.3743 -0.6121 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6173 -4.9205 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 2.8332 -5.9128 0.7797 34 1 2.1098 -7.5061 2.0907 35 1 0.3344 -7.3842 1.8534 36 1 0.1911 -9.5933 0.9049 37 1 1.4486 -9.8298 2.1570 38 1 2.7390 -11.6889 1.9132 39 1 0.7456 -12.5370 -0.2371 40 1 0.4104 -11.4175 1.1054 41 1 -0.3765 -13.7084 1.6379 42 1 0.9368 -13.2131 2.7331 43 1 1.2859 -15.5271 1.9127 44 1 3.2506 -14.0891 2.3845 45 1 3.5857 -15.2082 1.0419 46 1 4.3722 -12.9182 0.5089 47 1 3.0586 -13.4132 -0.5854 48 1 3.4343 -8.0739 -0.5668 49 1 2.0986 -8.5561 -1.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185423807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:32 Heat of formation + Delta-G solvation = -156.920304 kcal Electronic energy + Delta-G solvation = -29634.089497 eV Core-core repulsion = 25315.436448 eV Total energy + Delta-G solvation = -4318.653050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.55912 -41.49088 -40.20568 -39.11086 -37.90518 -36.21297 -35.57462 -33.27615 -32.34401 -31.77649 -31.19279 -29.82568 -27.80229 -25.91563 -24.89685 -23.73723 -23.44544 -21.87965 -21.12593 -20.83201 -20.18649 -19.92251 -18.28882 -17.65024 -17.56738 -17.31757 -16.79938 -16.62487 -16.39749 -16.32920 -16.24938 -15.84336 -15.40714 -15.19480 -14.83867 -14.59162 -14.39593 -14.12298 -13.96460 -13.95129 -13.63878 -13.50009 -13.44816 -13.22558 -13.04517 -12.95092 -12.91722 -12.80940 -12.60030 -12.42936 -12.35003 -12.11894 -12.02632 -11.82024 -11.70983 -11.50957 -11.37507 -10.99853 -10.73192 -10.35600 -10.01206 -9.71719 -9.30894 -8.46730 -5.95130 1.38002 1.42181 1.54349 1.56515 1.87914 2.05968 2.29661 2.91259 3.20812 3.30997 3.43837 3.52089 3.62192 3.67710 3.80413 3.90739 4.00388 4.03745 4.10489 4.17428 4.26558 4.30144 4.31777 4.35556 4.40339 4.49110 4.51319 4.60344 4.64992 4.76134 4.81078 4.84307 4.90705 4.99304 5.01472 5.06041 5.09175 5.14748 5.20733 5.24498 5.29812 5.41356 5.45015 5.89501 6.10447 6.34694 6.48682 6.60708 7.10305 7.13229 7.56949 8.12751 8.70428 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.001665 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.659961 B =16816.368206 C =17170.950826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.070 3.930 13 N -0.679 5.679 14 C 0.085 3.915 15 H 0.110 0.890 16 C -0.159 4.159 17 C 0.100 3.900 18 N -0.616 5.616 19 C 0.521 3.479 20 O -0.594 6.594 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.137 4.137 24 C 0.077 3.923 25 F -0.237 7.237 26 C -0.139 4.139 27 C -0.102 4.102 28 C 0.115 3.885 29 H 0.278 0.722 30 H 0.398 0.602 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.347 0.653 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -29.136 10.175 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.514 6.514 12 C -0.062 4.062 13 N -0.311 5.311 14 C -0.026 4.026 15 H 0.128 0.872 16 C -0.199 4.199 17 C -0.022 4.022 18 N -0.349 5.349 19 C 0.312 3.688 20 O -0.474 6.474 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.175 4.175 24 C 0.041 3.959 25 F -0.218 7.218 26 C -0.177 4.177 27 C -0.140 4.140 28 C -0.009 4.009 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.167 0.833 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.787 -29.086 8.972 30.813 hybrid contribution 0.044 1.130 0.053 1.132 sum -4.743 -27.957 9.025 29.758 Atomic orbital electron populations 1.69659 1.06706 1.29284 1.50244 1.25998 0.96553 1.02289 0.96291 0.84955 0.77912 0.77063 0.78570 1.19855 1.19384 1.19889 1.19645 0.92661 0.84140 1.49993 0.90526 1.41913 1.09370 1.04637 1.64994 1.20968 0.88252 0.86330 0.82171 1.90504 1.16116 1.88013 1.56731 1.21545 0.93742 0.87327 1.03617 1.59865 1.18986 1.00440 1.51823 1.22598 0.96402 0.87035 0.96570 0.87170 1.23603 1.04496 0.95354 0.96403 1.22730 0.92535 0.95671 0.91216 1.48595 1.43010 1.09861 1.33453 1.21141 0.79210 0.83555 0.84933 1.90691 1.37184 1.84039 1.35503 1.21351 0.98422 0.91428 1.00090 1.21649 0.92739 1.00329 1.00646 1.22152 1.01054 0.92904 1.01373 1.21953 0.95684 0.99659 0.78561 1.92771 1.94173 1.94252 1.40603 1.22145 0.95290 0.98045 1.02200 1.21268 0.99471 0.93868 0.99410 1.21761 0.99968 0.84296 0.94876 0.91277 0.76819 0.87633 0.90361 0.83264 0.90713 0.87138 0.88483 0.87566 0.85479 0.93488 0.88365 0.89485 0.86847 0.87360 0.87214 0.90533 0.92099 0.93806 0.93302 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16 10 C 0.44 20.17 7.82 87.66 0.69 20.86 16 11 O -0.63 -34.68 15.78 -3.05 -0.05 -34.73 16 12 C 0.07 2.18 6.03 85.56 0.52 2.70 16 13 N -0.68 -20.12 5.93 -489.45 -2.90 -23.03 16 14 C 0.08 1.74 3.27 46.10 0.15 1.89 16 15 H 0.11 1.95 7.82 -2.39 -0.02 1.93 16 16 C -0.16 -2.13 6.68 32.06 0.21 -1.92 16 17 C 0.10 1.05 5.14 86.93 0.45 1.50 16 18 N -0.62 -12.35 3.32 -811.35 -2.69 -15.05 16 19 C 0.52 12.38 7.22 87.66 0.63 13.01 16 20 O -0.59 -20.48 16.31 -3.01 -0.05 -20.53 16 21 C -0.09 -1.30 1.88 -11.54 -0.02 -1.32 16 22 C -0.12 -1.20 4.89 30.60 0.15 -1.05 16 23 C -0.14 -0.75 5.72 30.59 0.17 -0.57 16 24 C 0.08 0.68 4.12 30.59 0.13 0.81 16 25 F -0.24 -4.20 16.04 44.97 0.72 -3.48 16 26 C -0.14 -1.28 5.72 30.58 0.17 -1.11 16 27 C -0.10 -1.71 4.37 30.58 0.13 -1.57 16 28 C 0.12 2.87 6.62 86.73 0.57 3.45 16 29 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 30 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 31 H 0.11 2.97 8.08 -2.39 -0.02 2.95 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.35 10.95 7.91 -89.69 -0.71 10.24 16 34 H 0.07 1.15 7.77 -2.39 -0.02 1.13 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 0.65 7.08 -2.39 -0.02 0.64 16 37 H 0.11 0.58 7.34 -2.39 -0.02 0.56 16 38 H 0.13 1.05 7.85 -2.39 -0.02 1.03 16 39 H 0.05 0.76 7.80 -2.39 -0.02 0.75 16 40 H 0.10 0.62 4.98 -2.39 -0.01 0.61 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 47 H 0.04 1.01 7.76 -2.39 -0.02 0.99 16 48 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 49 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.56 390.27 0.49 -79.07 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.46 Total: 33.28 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.24 Total: 18.47 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.94 Total: -116.81 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.10 Total: -55.26 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.72 Total: -3.48 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -79.56 0.49 -79.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185423807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.849 kcal (2) G-P(sol) polarization free energy of solvation -79.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds