Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47383 * 240.00053 * 3 2 1 5 5 H 1.48505 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47189 * 119.99792 * 3 2 1 7 7 C 1.38952 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99520 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99780 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00290 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47126 * 179.97438 * 12 10 9 14 14 C 1.46195 * 110.99506 * 197.07972 * 13 12 10 15 15 C 1.51281 * 109.09691 * 144.77220 * 14 13 12 16 16 C 1.53801 * 109.62819 * 92.40911 * 15 14 13 17 17 N 1.47612 * 111.30318 * 319.95948 * 16 15 14 18 18 C 1.34772 * 118.74472 * 138.34142 * 17 16 15 19 19 O 1.21286 * 119.99991 * 175.16550 * 18 17 16 20 20 C 1.50695 * 120.00457 * 355.16292 * 18 17 16 21 21 H 1.09003 * 110.02034 * 35.02836 * 20 18 17 22 22 C 1.54268 * 110.03478 * 273.59004 * 20 18 17 23 23 C 1.54887 * 104.19910 * 217.10407 * 22 20 18 24 24 C 1.54887 * 102.74779 * 37.94143 * 23 22 20 25 25 H 1.09001 * 110.48555 * 203.37866 * 24 23 22 26 26 F 1.39903 * 110.59958 * 80.79073 * 24 23 22 27 27 C 1.53868 * 110.03672 * 156.42226 * 20 18 17 28 28 C 1.44879 * 122.50527 * 318.31764 * 17 16 15 29 29 C 1.41442 * 110.99775 * 66.05229 * 13 12 10 30 30 H 0.96999 * 119.99938 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46570 * 59.99857 * 12 10 9 33 33 H 1.08996 * 109.46684 * 300.00327 * 12 10 9 34 34 H 1.09004 * 109.53562 * 264.65638 * 14 13 12 35 35 H 1.09004 * 109.53707 * 24.80724 * 14 13 12 36 36 H 1.08999 * 109.43999 * 212.45800 * 15 14 13 37 37 H 1.08997 * 109.44255 * 332.39411 * 15 14 13 38 38 H 1.09005 * 109.10840 * 80.43023 * 16 15 14 39 39 H 1.09005 * 109.10943 * 199.55010 * 16 15 14 40 40 H 1.09006 * 110.48187 * 335.78473 * 22 20 18 41 41 H 1.09002 * 110.48658 * 98.42089 * 22 20 18 42 42 H 1.08994 * 110.75417 * 279.62051 * 23 22 20 43 43 H 1.09003 * 110.91564 * 156.32759 * 23 22 20 44 44 H 1.09000 * 110.03652 * 238.56570 * 27 20 18 45 45 H 1.08998 * 110.03299 * 359.95591 * 27 20 18 46 46 H 1.08997 * 109.43589 * 329.66445 * 28 17 16 47 47 H 1.09000 * 109.43478 * 209.79018 * 28 17 16 48 48 H 1.09004 * 109.38406 * 311.83589 * 29 13 12 49 49 H 1.08995 * 109.39139 * 71.52372 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0050 14 6 1.5468 -7.2251 -0.4064 15 6 2.5223 -8.0576 -1.2090 16 6 3.2740 -9.0185 -0.2725 17 7 3.6249 -8.3607 1.0015 18 6 3.4769 -9.0510 2.1495 19 8 3.8401 -8.5656 3.2000 20 6 2.8602 -10.4257 2.1282 21 1 3.1480 -10.9498 1.2167 22 6 1.3237 -10.3171 2.2134 23 6 0.9062 -11.5194 3.0961 24 6 2.0364 -11.5757 4.1537 25 1 2.1125 -12.5770 4.5776 26 9 1.8130 -10.6335 5.1634 27 6 3.3133 -11.2261 3.3617 28 6 4.1228 -7.0017 1.0647 29 6 2.9361 -6.0175 1.2013 30 1 -0.4850 0.8400 -0.0004 31 1 0.3533 -2.3906 -0.0016 32 1 0.6168 -4.9200 -0.8931 33 1 0.6175 -4.9212 0.8869 34 1 1.2398 -7.7784 0.4811 35 1 0.6717 -6.9988 -1.0157 36 1 1.9779 -8.6326 -1.9581 37 1 3.2375 -7.4011 -1.7046 38 1 2.6423 -9.8825 -0.0660 39 1 4.1876 -9.3537 -0.7637 40 1 1.0333 -9.3783 2.6853 41 1 0.8797 -10.3997 1.2214 42 1 0.8793 -12.4379 2.5100 43 1 -0.0581 -11.3375 3.5706 44 1 3.8203 -12.1389 3.0491 45 1 3.9800 -10.6204 3.9755 46 1 4.6781 -6.7761 0.1543 47 1 4.7821 -6.8967 1.9263 48 1 3.3166 -5.0206 1.4242 49 1 2.2862 -6.3448 2.0127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196925237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = -109.899099 kcal Electronic energy + Delta-G solvation = -31199.030516 eV Core-core repulsion = 26882.416458 eV Total energy + Delta-G solvation = -4316.614057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.73306 -40.73089 -38.93992 -37.56689 -36.74123 -35.11001 -33.81649 -32.55932 -31.24630 -30.16343 -29.17147 -28.43390 -26.74928 -25.64006 -24.11881 -22.88965 -21.30798 -20.97348 -20.55359 -19.27679 -18.57499 -17.97727 -17.74174 -16.79482 -16.46147 -16.03072 -15.84016 -15.51090 -15.19103 -15.05994 -14.97822 -14.54391 -14.23072 -13.95561 -13.83279 -13.68078 -13.47357 -13.31755 -13.16773 -12.80608 -12.39153 -12.13208 -11.91568 -11.82956 -11.69331 -11.50309 -11.45652 -11.41831 -11.24669 -11.17117 -11.02643 -10.94561 -10.90467 -10.81267 -10.73767 -10.42606 -10.19477 -9.70838 -9.44103 -8.66889 -8.38880 -7.94831 -7.70039 -6.39910 -3.80599 2.53169 2.94591 3.21534 3.27085 3.31506 3.90986 3.92573 3.98881 3.99502 4.21836 4.26481 4.45784 4.60885 4.68420 4.78191 4.85619 4.91874 5.03417 5.05161 5.08507 5.11298 5.16828 5.25449 5.31661 5.40805 5.42496 5.49355 5.53147 5.58729 5.68925 5.70689 5.76580 5.82735 5.84026 5.89399 5.95868 5.97449 6.19647 6.21031 6.31727 6.38593 6.69270 7.30809 7.38693 7.56739 7.77035 8.08292 8.15537 8.63681 9.19884 9.56504 10.08174 10.77814 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.002402 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.619910 B =11656.367357 C =11979.984564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.054 3.946 13 N -0.540 5.540 14 C 0.073 3.927 15 C -0.132 4.132 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.511 3.489 19 O -0.533 6.533 20 C -0.115 4.115 21 H 0.098 0.902 22 C -0.110 4.110 23 C -0.147 4.147 24 C 0.085 3.915 25 H 0.088 0.912 26 F -0.205 7.205 27 C -0.143 4.143 28 C 0.120 3.880 29 C 0.062 3.938 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.111 0.889 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -26.579 0.157 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.077 4.077 13 N -0.264 5.264 14 C -0.055 4.055 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.298 3.702 19 O -0.409 6.409 20 C -0.137 4.137 21 H 0.116 0.884 22 C -0.148 4.148 23 C -0.185 4.185 24 C 0.049 3.951 25 H 0.106 0.894 26 F -0.186 7.186 27 C -0.181 4.181 28 C -0.003 4.003 29 C -0.067 4.067 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.129 0.871 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 1.359 -26.030 0.407 26.068 hybrid contribution -0.886 0.787 0.439 1.264 sum 0.474 -25.243 0.846 25.261 Atomic orbital electron populations 1.69602 1.05940 1.28234 1.50635 1.25254 0.95621 0.99706 0.97356 0.85927 0.78767 0.80510 0.79069 1.19902 1.21007 1.19914 1.19645 0.93320 0.82229 1.47604 0.87966 1.41875 1.09177 1.04623 1.64412 1.19808 0.88458 0.84599 0.84355 1.90479 1.13684 1.86878 1.55141 1.21827 0.93604 0.90957 1.01305 1.57779 1.28597 1.03378 1.36662 1.21520 0.95728 0.89984 0.98286 1.21899 0.99497 0.98079 0.97634 1.22078 0.99609 0.95597 0.84395 1.47937 1.64909 1.14684 1.06222 1.20563 0.78480 0.87431 0.83693 1.90708 1.49290 1.70480 1.30419 1.21992 0.96981 0.94178 1.00502 0.88411 1.22311 0.92289 0.99459 1.00769 1.23101 0.98834 0.99374 0.97160 1.22301 0.95725 0.90718 0.86341 0.89373 1.92857 1.95690 1.67901 1.62108 1.22786 0.98072 1.00900 0.96311 1.21606 0.96282 0.78962 1.03443 1.21787 0.94547 1.02007 0.88396 0.91846 0.77530 0.89499 0.93649 0.94628 0.91119 0.90422 0.89559 0.90248 0.91699 0.90653 0.90249 0.89388 0.89909 0.89744 0.88290 0.89593 0.89592 0.87122 0.96859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C 0.44 10.36 7.37 -10.98 -0.08 10.28 16 11 O -0.58 -15.28 13.96 5.55 0.08 -15.21 16 12 C 0.05 0.96 5.44 -4.98 -0.03 0.93 16 13 N -0.54 -8.73 3.60 -240.93 -0.87 -9.60 16 14 C 0.07 0.87 5.32 -5.07 -0.03 0.84 16 15 C -0.13 -1.25 5.78 -27.18 -0.16 -1.41 16 16 C 0.11 0.90 5.86 -3.02 -0.02 0.88 16 17 N -0.60 -7.35 2.18 -172.45 -0.38 -7.72 16 18 C 0.51 6.65 6.62 -10.99 -0.07 6.58 16 19 O -0.53 -9.24 14.93 5.55 0.08 -9.16 16 20 C -0.12 -1.01 2.36 -90.66 -0.21 -1.23 16 21 H 0.10 0.60 6.40 -51.93 -0.33 0.27 16 22 C -0.11 -0.90 6.13 -25.07 -0.15 -1.05 16 23 C -0.15 -0.97 6.70 -24.74 -0.17 -1.13 16 24 C 0.09 0.71 4.65 -25.07 -0.12 0.60 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 F -0.20 -2.62 17.18 2.25 0.04 -2.58 16 27 C -0.14 -1.24 6.14 -25.61 -0.16 -1.39 16 28 C 0.12 1.79 5.55 -3.97 -0.02 1.77 16 29 C 0.06 1.08 5.01 -5.74 -0.03 1.05 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 32 H 0.09 1.37 7.57 -51.93 -0.39 0.98 16 33 H 0.05 0.78 8.11 -51.93 -0.42 0.35 16 34 H 0.04 0.43 7.32 -51.93 -0.38 0.05 16 35 H 0.07 0.77 7.36 -51.93 -0.38 0.39 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.00 7.98 -51.93 -0.41 0.58 16 38 H 0.08 0.49 5.06 -51.93 -0.26 0.23 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 41 H 0.08 0.48 7.76 -51.93 -0.40 0.08 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 1.17 6.65 -51.93 -0.35 0.82 16 46 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 47 H 0.09 1.38 7.22 -51.93 -0.37 1.01 16 48 H 0.11 2.32 5.61 -51.93 -0.29 2.03 16 49 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -33.89 382.54 -8.74 -42.63 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.62 Total: 9.28 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.48 Total: 8.75 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.58 Total: -55.68 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.16 Total: -24.37 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.89 -8.74 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196925237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.265 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds