Wall clock time and date at job start Sat Apr 11 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47383 * 240.00053 * 3 2 1 5 5 H 1.48505 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47189 * 119.99792 * 3 2 1 7 7 C 1.38952 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99520 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99780 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00290 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47126 * 179.97438 * 12 10 9 14 14 C 1.46195 * 110.99506 * 197.07972 * 13 12 10 15 15 C 1.51281 * 109.09691 * 144.77220 * 14 13 12 16 16 C 1.53801 * 109.62819 * 92.40911 * 15 14 13 17 17 N 1.47612 * 111.30318 * 319.95948 * 16 15 14 18 18 C 1.34772 * 118.74472 * 138.34142 * 17 16 15 19 19 O 1.21286 * 119.99991 * 175.16550 * 18 17 16 20 20 C 1.50695 * 120.00457 * 355.16292 * 18 17 16 21 21 H 1.09003 * 110.02034 * 35.02836 * 20 18 17 22 22 C 1.54268 * 110.03478 * 273.59004 * 20 18 17 23 23 C 1.54887 * 104.19910 * 217.10407 * 22 20 18 24 24 C 1.54887 * 102.74779 * 37.94143 * 23 22 20 25 25 H 1.09001 * 110.48555 * 203.37866 * 24 23 22 26 26 F 1.39903 * 110.59958 * 80.79073 * 24 23 22 27 27 C 1.53868 * 110.03672 * 156.42226 * 20 18 17 28 28 C 1.44879 * 122.50527 * 318.31764 * 17 16 15 29 29 C 1.41442 * 110.99775 * 66.05229 * 13 12 10 30 30 H 0.96999 * 119.99938 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46570 * 59.99857 * 12 10 9 33 33 H 1.08996 * 109.46684 * 300.00327 * 12 10 9 34 34 H 1.09004 * 109.53562 * 264.65638 * 14 13 12 35 35 H 1.09004 * 109.53707 * 24.80724 * 14 13 12 36 36 H 1.08999 * 109.43999 * 212.45800 * 15 14 13 37 37 H 1.08997 * 109.44255 * 332.39411 * 15 14 13 38 38 H 1.09005 * 109.10840 * 80.43023 * 16 15 14 39 39 H 1.09005 * 109.10943 * 199.55010 * 16 15 14 40 40 H 1.09006 * 110.48187 * 335.78473 * 22 20 18 41 41 H 1.09002 * 110.48658 * 98.42089 * 22 20 18 42 42 H 1.08994 * 110.75417 * 279.62051 * 23 22 20 43 43 H 1.09003 * 110.91564 * 156.32759 * 23 22 20 44 44 H 1.09000 * 110.03652 * 238.56570 * 27 20 18 45 45 H 1.08998 * 110.03299 * 359.95591 * 27 20 18 46 46 H 1.08997 * 109.43589 * 329.66445 * 28 17 16 47 47 H 1.09000 * 109.43478 * 209.79018 * 28 17 16 48 48 H 1.09004 * 109.38406 * 311.83589 * 29 13 12 49 49 H 1.08995 * 109.39139 * 71.52372 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0050 14 6 1.5468 -7.2251 -0.4064 15 6 2.5223 -8.0576 -1.2090 16 6 3.2740 -9.0185 -0.2725 17 7 3.6249 -8.3607 1.0015 18 6 3.4769 -9.0510 2.1495 19 8 3.8401 -8.5656 3.2000 20 6 2.8602 -10.4257 2.1282 21 1 3.1480 -10.9498 1.2167 22 6 1.3237 -10.3171 2.2134 23 6 0.9062 -11.5194 3.0961 24 6 2.0364 -11.5757 4.1537 25 1 2.1125 -12.5770 4.5776 26 9 1.8130 -10.6335 5.1634 27 6 3.3133 -11.2261 3.3617 28 6 4.1228 -7.0017 1.0647 29 6 2.9361 -6.0175 1.2013 30 1 -0.4850 0.8400 -0.0004 31 1 0.3533 -2.3906 -0.0016 32 1 0.6168 -4.9200 -0.8931 33 1 0.6175 -4.9212 0.8869 34 1 1.2398 -7.7784 0.4811 35 1 0.6717 -6.9988 -1.0157 36 1 1.9779 -8.6326 -1.9581 37 1 3.2375 -7.4011 -1.7046 38 1 2.6423 -9.8825 -0.0660 39 1 4.1876 -9.3537 -0.7637 40 1 1.0333 -9.3783 2.6853 41 1 0.8797 -10.3997 1.2214 42 1 0.8793 -12.4379 2.5100 43 1 -0.0581 -11.3375 3.5706 44 1 3.8203 -12.1389 3.0491 45 1 3.9800 -10.6204 3.9755 46 1 4.6781 -6.7761 0.1543 47 1 4.7821 -6.8967 1.9263 48 1 3.3166 -5.0206 1.4242 49 1 2.2862 -6.3448 2.0127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196925237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:39 Heat of formation + Delta-G solvation = -133.485430 kcal Electronic energy + Delta-G solvation = -31200.053296 eV Core-core repulsion = 26882.416458 eV Total energy + Delta-G solvation = -4317.636837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.54355 -41.74998 -40.46627 -38.94975 -37.58959 -36.39166 -35.74608 -33.58174 -33.28168 -31.20100 -29.86909 -29.43954 -27.96809 -26.97639 -25.78285 -23.92732 -22.06353 -21.72583 -21.60756 -21.04905 -19.92620 -19.46963 -18.73365 -17.93011 -17.45362 -17.31431 -16.84542 -16.64804 -16.55068 -16.20943 -16.17803 -15.87813 -15.59616 -15.49600 -15.26017 -14.62392 -14.54525 -14.36866 -14.17851 -13.99050 -13.64156 -13.46110 -13.18039 -13.02713 -12.74570 -12.72475 -12.63368 -12.47086 -12.40614 -12.38695 -12.26439 -12.13995 -11.95975 -11.81211 -11.79740 -11.55497 -11.46656 -11.44142 -10.72601 -10.29264 -10.00979 -9.65900 -9.10161 -8.46984 -5.95523 1.38420 1.39992 1.50935 1.55673 2.00554 2.05464 2.27579 2.74892 3.19636 3.25366 3.38063 3.38518 3.57922 3.85207 3.91156 3.97455 4.01071 4.11839 4.14787 4.22211 4.30329 4.33036 4.38697 4.40496 4.43400 4.47982 4.50956 4.53766 4.61404 4.66775 4.76585 4.85091 4.88064 4.89054 4.97988 5.04029 5.12328 5.14288 5.22472 5.35117 5.35988 5.40136 5.64672 5.91341 6.13010 6.34128 6.53828 6.60416 7.12548 7.17081 7.56274 8.12101 8.70299 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.002402 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.619910 B =11656.367357 C =11979.984564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.612 6.612 12 C 0.065 3.935 13 N -0.548 5.548 14 C 0.068 3.932 15 C -0.127 4.127 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.502 3.498 19 O -0.590 6.590 20 C -0.108 4.108 21 H 0.140 0.860 22 C -0.111 4.111 23 C -0.137 4.137 24 C 0.068 3.932 25 H 0.119 0.881 26 F -0.239 7.239 27 C -0.144 4.144 28 C 0.132 3.868 29 C 0.076 3.924 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.065 0.935 49 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -29.859 -2.118 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.498 6.498 12 C -0.066 4.066 13 N -0.272 5.272 14 C -0.058 4.058 15 C -0.165 4.165 16 C -0.021 4.021 17 N -0.334 5.334 18 C 0.292 3.708 19 O -0.470 6.470 20 C -0.128 4.128 21 H 0.158 0.842 22 C -0.149 4.149 23 C -0.174 4.174 24 C 0.032 3.968 25 H 0.136 0.864 26 F -0.220 7.220 27 C -0.182 4.182 28 C 0.008 3.992 29 C -0.054 4.054 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 0.064 -29.353 -1.909 29.415 hybrid contribution -0.470 1.761 1.158 2.159 sum -0.406 -27.591 -0.751 27.605 Atomic orbital electron populations 1.69664 1.06817 1.29316 1.50467 1.26027 0.96544 1.02378 0.96366 0.85010 0.77784 0.76751 0.78919 1.19511 1.19423 1.19985 1.19612 0.92655 0.84022 1.49850 0.90361 1.41947 1.09269 1.04744 1.65329 1.20851 0.88392 0.85970 0.82093 1.90457 1.15622 1.87720 1.56025 1.21738 0.93336 0.88477 1.03045 1.57832 1.28853 1.04981 1.35580 1.21749 0.96984 0.88122 0.98964 1.21895 0.98740 0.97870 0.97991 1.22442 1.01255 0.95989 0.82397 1.48040 1.64241 1.13263 1.07877 1.21488 0.77531 0.88989 0.82830 1.90687 1.51666 1.72101 1.32592 1.22123 0.97046 0.91249 1.02422 0.84183 1.22355 0.91716 0.98351 1.02471 1.23131 0.97605 1.00260 0.96399 1.22801 0.96492 0.91174 0.86330 0.86368 1.92792 1.95916 1.69467 1.63826 1.22836 0.97815 1.01722 0.95807 1.21213 0.94938 0.80696 1.02381 1.21472 0.95200 1.00107 0.88670 0.91319 0.77113 0.86470 0.92809 0.94377 0.89208 0.86294 0.91776 0.86650 0.89709 0.94740 0.87028 0.85395 0.90360 0.86026 0.92353 0.89500 0.91859 0.91658 0.98601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -30.20 5.29 -306.97 -1.62 -31.82 16 10 C 0.44 21.36 7.37 87.66 0.65 22.01 16 11 O -0.61 -34.15 13.96 -3.07 -0.04 -34.19 16 12 C 0.06 2.30 5.44 85.56 0.47 2.76 16 13 N -0.55 -17.67 3.60 -916.17 -3.30 -20.97 16 14 C 0.07 1.45 5.32 85.88 0.46 1.91 16 15 C -0.13 -1.91 5.78 30.30 0.18 -1.73 16 16 C 0.10 1.30 5.86 86.44 0.51 1.81 16 17 N -0.60 -14.12 2.18 -817.89 -1.79 -15.90 16 18 C 0.50 12.99 6.62 87.66 0.58 13.57 16 19 O -0.59 -21.97 14.93 -3.05 -0.05 -22.01 16 20 C -0.11 -1.58 2.36 -10.82 -0.03 -1.61 16 21 H 0.14 0.88 6.40 -2.39 -0.02 0.87 16 22 C -0.11 -1.47 6.13 31.67 0.19 -1.28 16 23 C -0.14 -1.32 6.70 31.88 0.21 -1.10 16 24 C 0.07 1.01 4.65 31.67 0.15 1.15 16 25 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 26 F -0.24 -6.31 17.18 44.97 0.77 -5.54 16 27 C -0.14 -2.23 6.14 31.32 0.19 -2.03 16 28 C 0.13 4.16 5.55 87.29 0.48 4.65 16 29 C 0.08 2.79 5.01 87.91 0.44 3.23 16 30 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 32 H 0.12 3.48 7.57 -2.38 -0.02 3.46 16 33 H 0.05 1.84 8.11 -2.39 -0.02 1.82 16 34 H 0.04 0.82 7.32 -2.38 -0.02 0.80 16 35 H 0.09 1.61 7.36 -2.38 -0.02 1.59 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.31 7.98 -2.39 -0.02 1.30 16 38 H 0.12 0.71 5.06 -2.38 -0.01 0.70 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.03 0.75 7.85 -2.38 -0.02 0.73 16 41 H 0.11 0.75 7.76 -2.39 -0.02 0.73 16 42 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 1.43 6.65 -2.39 -0.02 1.41 16 46 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 47 H 0.06 2.25 7.22 -2.39 -0.02 2.24 16 48 H 0.07 2.99 5.61 -2.39 -0.01 2.98 16 49 H 0.00 -0.15 8.12 -2.39 -0.02 -0.17 16 Total: -1.00 -82.29 382.54 2.28 -80.01 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.24 Total: 30.24 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.76 Total: 24.67 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -6.43 Total: -119.07 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.09 Total: -56.21 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.77 Total: -5.54 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -82.29 2.28 -80.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196925237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.477 kcal (2) G-P(sol) polarization free energy of solvation -82.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds