Wall clock time and date at job start Sat Apr 11 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48495 * 109.47389 * 270.00607 * 3 2 1 5 5 H 1.48505 * 109.46634 * 30.00494 * 3 2 1 6 6 H 1.48500 * 109.46921 * 150.00202 * 3 2 1 7 7 C 1.38948 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00296 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99966 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00277 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47600 * 179.97438 * 12 10 9 14 14 C 1.46224 * 110.93778 * 189.51240 * 13 12 10 15 15 C 1.47541 * 114.33551 * 148.52852 * 14 13 12 16 16 C 1.54952 * 109.72994 * 62.21608 * 15 14 13 17 17 N 1.44680 * 109.52582 * 290.52009 * 16 15 14 18 18 C 1.34774 * 118.55204 * 269.05165 * 17 16 15 19 19 O 1.21278 * 120.00300 * 175.11487 * 18 17 16 20 20 C 1.50707 * 119.99759 * 355.12715 * 18 17 16 21 21 H 1.09002 * 110.01402 * 30.68255 * 20 18 17 22 22 C 1.53871 * 110.03322 * 152.07458 * 20 18 17 23 23 C 1.54273 * 106.59813 * 119.28237 * 22 20 18 24 24 C 1.54889 * 104.19281 * 23.60998 * 23 22 20 25 25 H 1.09000 * 110.75692 * 80.55894 * 24 23 22 26 26 F 1.39896 * 110.75312 * 203.74211 * 24 23 22 27 27 C 1.54260 * 110.02977 * 269.24356 * 20 18 17 28 28 C 1.47781 * 122.90262 * 89.08184 * 17 16 15 29 29 C 1.44765 * 110.99873 * 66.03966 * 13 12 10 30 30 H 0.96992 * 120.00384 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00153 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47707 * 59.99032 * 12 10 9 33 33 H 1.09003 * 109.46916 * 299.99609 * 12 10 9 34 34 H 1.08997 * 108.52290 * 27.27635 * 14 13 12 35 35 H 1.09001 * 108.39312 * 269.69761 * 14 13 12 36 36 H 1.08998 * 109.43000 * 302.13755 * 15 14 13 37 37 H 1.09002 * 109.42697 * 182.29152 * 15 14 13 38 38 H 1.08994 * 109.46166 * 170.50490 * 16 15 14 39 39 H 1.09002 * 109.46222 * 50.53998 * 16 15 14 40 40 H 1.09000 * 110.03359 * 238.57080 * 22 20 18 41 41 H 1.09000 * 110.03516 * 0.02562 * 22 20 18 42 42 H 1.08992 * 110.48423 * 142.28979 * 23 22 20 43 43 H 1.08994 * 110.48427 * 264.93331 * 23 22 20 44 44 H 1.09000 * 110.49130 * 335.78059 * 27 20 18 45 45 H 1.09000 * 110.48822 * 98.43016 * 27 20 18 46 46 H 1.08998 * 109.06602 * 197.57906 * 28 17 16 47 47 H 1.09001 * 109.06449 * 78.64254 * 28 17 16 48 48 H 1.09000 * 109.43676 * 97.79992 * 29 13 12 49 49 H 1.09004 * 109.43609 * 337.88899 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2440 -4.8629 -0.0034 13 7 2.1985 -5.9795 -0.0036 14 6 1.5145 -7.2517 -0.2310 15 6 2.3217 -8.2561 -0.9496 16 6 3.5754 -8.6155 -0.1129 17 7 4.4795 -7.4863 -0.0870 18 6 5.4290 -7.3993 -1.0395 19 8 6.1433 -6.4209 -1.0963 20 6 5.6030 -8.5180 -2.0343 21 1 4.6460 -9.0066 -2.2175 22 6 6.1744 -7.9671 -3.3525 23 6 7.5262 -8.6757 -3.5771 24 6 7.4055 -9.9898 -2.7661 25 1 6.8434 -10.7382 -3.3247 26 9 8.6706 -10.4777 -2.4217 27 6 6.6274 -9.5422 -1.5039 28 6 4.4083 -6.4242 0.9381 29 6 2.9518 -6.0183 1.2320 30 1 -0.4850 0.8399 0.0004 31 1 0.3535 -2.3907 -0.0016 32 1 0.6182 -4.9201 -0.8939 33 1 0.6163 -4.9213 0.8859 34 1 0.6088 -7.0599 -0.8063 35 1 1.2276 -7.6656 0.7358 36 1 2.6325 -7.8503 -1.9122 37 1 1.7242 -9.1534 -1.1110 38 1 4.0777 -9.4726 -0.5612 39 1 3.2741 -8.8629 0.9050 40 1 5.4951 -8.1890 -4.1756 41 1 6.3264 -6.8907 -3.2727 42 1 7.6720 -8.8925 -4.6353 43 1 8.3448 -8.0656 -3.1954 44 1 7.3009 -9.0721 -0.7873 45 1 6.1173 -10.3914 -1.0491 46 1 4.9568 -5.5510 0.5848 47 1 4.8697 -6.7851 1.8573 48 1 2.5022 -6.7452 1.9083 49 1 2.9368 -5.0325 1.6970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196925239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:42 Heat of formation + Delta-G solvation = -110.817303 kcal Electronic energy + Delta-G solvation = -31205.890244 eV Core-core repulsion = 26889.236371 eV Total energy + Delta-G solvation = -4316.653874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.80378 -40.54934 -38.95688 -37.56179 -36.66473 -35.01858 -33.82365 -32.68070 -31.23195 -30.06159 -28.85048 -28.34184 -26.65000 -25.61850 -24.08174 -22.95759 -21.27425 -20.92579 -20.53375 -19.18766 -18.55736 -17.86698 -17.64327 -16.76131 -16.38214 -16.09147 -15.80903 -15.60423 -14.90128 -14.78985 -14.64041 -14.49136 -14.23893 -14.00455 -13.96541 -13.83351 -13.40358 -13.27872 -13.05572 -12.67560 -12.42423 -12.18037 -12.16739 -11.71653 -11.60281 -11.52308 -11.41399 -11.36015 -11.27038 -11.15124 -10.98004 -10.86360 -10.79337 -10.67214 -10.58826 -10.36947 -10.18921 -9.49600 -9.44123 -8.42638 -8.39976 -7.94066 -7.90131 -6.39277 -3.79629 2.75252 3.12268 3.20120 3.28509 3.34830 3.90223 3.95239 3.99966 4.19900 4.24736 4.31407 4.51460 4.62566 4.73979 4.83539 4.92574 5.03517 5.06028 5.13209 5.16852 5.21414 5.22222 5.27333 5.33194 5.40441 5.44697 5.47811 5.52210 5.61264 5.75342 5.77309 5.79743 5.84617 5.87049 5.95121 6.02215 6.06124 6.12752 6.15412 6.29134 6.50860 6.75506 7.28951 7.43731 7.57138 7.58195 8.09309 8.40861 8.64756 9.21409 9.57293 10.09434 10.78632 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.002644 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.243366 B =10585.625871 C =11639.910565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.570 6.570 12 C 0.048 3.952 13 N -0.509 5.509 14 C 0.058 3.942 15 C -0.136 4.136 16 C 0.110 3.890 17 N -0.591 5.591 18 C 0.517 3.483 19 O -0.528 6.528 20 C -0.113 4.113 21 H 0.098 0.902 22 C -0.113 4.113 23 C -0.146 4.146 24 C 0.085 3.915 25 H 0.094 0.906 26 F -0.211 7.211 27 C -0.133 4.133 28 C 0.125 3.875 29 C 0.057 3.943 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.031 0.969 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 -23.457 -2.526 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.226 3.774 11 O -0.453 6.453 12 C -0.083 4.083 13 N -0.233 5.233 14 C -0.070 4.070 15 C -0.176 4.176 16 C -0.014 4.014 17 N -0.323 5.323 18 C 0.304 3.696 19 O -0.404 6.404 20 C -0.135 4.135 21 H 0.116 0.884 22 C -0.151 4.151 23 C -0.183 4.183 24 C 0.049 3.951 25 H 0.112 0.888 26 F -0.192 7.192 27 C -0.172 4.172 28 C 0.003 3.997 29 C -0.072 4.072 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.138 -22.683 -2.883 23.436 hybrid contribution -1.087 0.689 0.666 1.450 sum 4.051 -21.994 -2.217 22.473 Atomic orbital electron populations 1.69610 1.05919 1.28067 1.50979 1.25242 0.95617 0.99672 0.97461 0.85874 0.79246 0.80875 0.78411 1.20427 1.20994 1.19406 1.19693 0.93349 0.82191 1.47280 0.87929 1.41868 1.09107 1.04597 1.64798 1.19753 0.88536 0.84525 0.84591 1.90560 1.13411 1.86833 1.54456 1.21950 0.93752 0.91232 1.01363 1.60372 1.25435 1.01526 1.35974 1.20970 0.96408 0.90220 0.99392 1.21487 0.97158 0.98536 1.00384 1.21607 0.90678 0.88378 1.00784 1.47507 1.31492 1.24022 1.29304 1.20377 0.80438 0.87478 0.81308 1.90713 1.45545 1.32070 1.72048 1.21910 1.00533 0.95400 0.95620 0.88382 1.22066 0.95380 1.02710 0.94902 1.22921 0.99413 0.95446 1.00565 1.22612 0.80058 0.96243 0.96237 0.88792 1.92801 1.43178 1.89612 1.93602 1.22832 0.97962 0.98467 0.97902 1.21911 0.97208 0.91341 0.89214 1.22265 0.93500 1.01690 0.89772 0.91957 0.77618 0.89481 0.93538 0.91649 0.94949 0.90772 0.90456 0.90465 0.90895 0.90877 0.88938 0.90398 0.89943 0.89712 0.89989 0.87652 0.92812 0.95121 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.33 5.29 -10.97 -0.06 -14.39 16 10 C 0.44 10.30 7.14 -10.99 -0.08 10.22 16 11 O -0.57 -15.30 14.44 5.55 0.08 -15.22 16 12 C 0.05 0.83 5.25 -4.98 -0.03 0.81 16 13 N -0.51 -8.05 3.90 -241.09 -0.94 -9.00 16 14 C 0.06 0.66 4.97 -6.83 -0.03 0.63 16 15 C -0.14 -1.25 5.79 -28.33 -0.16 -1.42 16 16 C 0.11 1.00 5.08 -3.98 -0.02 0.98 16 17 N -0.59 -7.86 2.53 -172.21 -0.44 -8.29 16 18 C 0.52 7.58 6.56 -10.98 -0.07 7.51 16 19 O -0.53 -10.36 14.92 5.56 0.08 -10.27 16 20 C -0.11 -1.14 2.38 -90.66 -0.22 -1.35 16 21 H 0.10 0.76 6.03 -51.93 -0.31 0.45 16 22 C -0.11 -1.16 6.32 -25.61 -0.16 -1.33 16 23 C -0.15 -1.33 6.63 -25.07 -0.17 -1.50 16 24 C 0.08 0.71 4.71 -24.74 -0.12 0.60 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 F -0.21 -2.30 17.22 2.25 0.04 -2.27 16 27 C -0.13 -1.16 5.96 -25.08 -0.15 -1.31 16 28 C 0.13 1.96 6.48 -2.80 -0.02 1.94 16 29 C 0.06 0.88 4.62 -4.43 -0.02 0.86 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 32 H 0.09 1.39 7.76 -51.93 -0.40 0.98 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 34 H 0.06 0.70 7.44 -51.93 -0.39 0.32 16 35 H 0.03 0.33 7.17 -51.93 -0.37 -0.04 16 36 H 0.07 0.81 7.99 -51.93 -0.41 0.39 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.51 5.62 -51.93 -0.29 0.22 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.27 6.78 -51.93 -0.35 0.91 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 45 H 0.08 0.52 7.86 -51.93 -0.41 0.12 16 46 H 0.11 2.15 6.90 -51.93 -0.36 1.79 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.03 0.39 7.13 -51.93 -0.37 0.02 16 49 H 0.09 1.66 6.21 -51.93 -0.32 1.34 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -34.27 382.44 -8.86 -43.13 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.61 Total: 9.50 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.48 Total: 8.68 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.71 Total: -55.69 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.49 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.27 -8.86 -43.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196925239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.687 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds