Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48506 * 109.46776 * 269.99951 * 3 2 1 5 5 H 1.48498 * 109.46931 * 29.99377 * 3 2 1 6 6 H 1.48491 * 109.47174 * 149.99920 * 3 2 1 7 7 C 1.38954 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99832 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99953 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47065 * 174.69592 * 12 10 9 14 14 C 1.46197 * 110.99915 * 64.77383 * 13 12 10 15 15 C 1.51272 * 109.15712 * 144.71754 * 14 13 12 16 16 C 1.53859 * 109.57048 * 92.34218 * 15 14 13 17 17 N 1.47614 * 111.36832 * 320.04871 * 16 15 14 18 18 C 1.34777 * 118.74898 * 138.28220 * 17 16 15 19 19 O 1.21277 * 119.99585 * 185.36465 * 18 17 16 20 20 C 1.50693 * 120.00040 * 5.35947 * 18 17 16 21 21 H 1.09005 * 110.01859 * 33.16358 * 20 18 17 22 22 C 1.53879 * 110.03194 * 154.55111 * 20 18 17 23 23 C 1.54259 * 106.59761 * 119.28658 * 22 20 18 24 24 C 1.54886 * 104.19782 * 23.61103 * 23 22 20 25 25 H 1.09001 * 110.76344 * 203.74059 * 24 23 22 26 26 F 1.39901 * 110.75662 * 80.36973 * 24 23 22 27 27 C 1.54262 * 110.03549 * 271.77033 * 20 18 17 28 28 C 1.44887 * 122.50416 * 318.29707 * 17 16 15 29 29 C 1.41437 * 111.00241 * 293.73807 * 13 12 10 30 30 H 0.96999 * 119.99528 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99869 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47258 * 54.70081 * 12 10 9 33 33 H 1.08997 * 109.47025 * 294.69760 * 12 10 9 34 34 H 1.08997 * 109.53535 * 264.64495 * 14 13 12 35 35 H 1.09005 * 109.53035 * 24.80100 * 14 13 12 36 36 H 1.08997 * 109.44824 * 212.49699 * 15 14 13 37 37 H 1.08998 * 109.44881 * 332.40246 * 15 14 13 38 38 H 1.08996 * 109.10660 * 199.53211 * 16 15 14 39 39 H 1.09006 * 108.99798 * 80.47818 * 16 15 14 40 40 H 1.09003 * 110.03193 * 238.57205 * 22 20 18 41 41 H 1.08997 * 110.03276 * 0.02562 * 22 20 18 42 42 H 1.09004 * 110.48771 * 142.28733 * 23 22 20 43 43 H 1.08998 * 110.49035 * 264.93463 * 23 22 20 44 44 H 1.08997 * 110.48585 * 335.78466 * 27 20 18 45 45 H 1.09005 * 110.48599 * 98.42669 * 27 20 18 46 46 H 1.09005 * 109.43440 * 329.64195 * 28 17 16 47 47 H 1.08997 * 109.40216 * 209.75054 * 28 17 16 48 48 H 1.09005 * 109.38640 * 311.84354 * 29 13 12 49 49 H 1.08999 * 109.38617 * 71.63143 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1932 -5.9767 -0.1248 14 6 3.0716 -6.0517 1.0415 15 6 3.3699 -7.5032 1.3457 16 6 4.6630 -7.9253 0.6268 17 7 4.7376 -7.3472 -0.7294 18 6 5.9163 -6.8563 -1.1609 19 8 5.9817 -6.2891 -2.2308 20 6 7.1528 -7.0121 -0.3138 21 1 7.1104 -7.9504 0.2393 22 6 8.4083 -6.9807 -1.2030 23 6 9.2505 -5.7765 -0.7338 24 6 8.7975 -5.5428 0.7288 25 1 8.9863 -4.5130 1.0319 26 9 9.4327 -6.4401 1.5940 27 6 7.2753 -5.8265 0.6656 28 6 3.5919 -7.2871 -1.6143 29 6 2.8279 -5.9602 -1.3886 30 1 -0.4849 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.5480 -4.8813 -0.8368 33 1 0.6898 -4.9623 0.9357 34 1 4.0022 -5.5247 0.8313 35 1 2.5788 -5.5934 1.8990 36 1 3.4920 -7.6308 2.4213 37 1 2.5438 -8.1239 0.9987 38 1 4.6919 -9.0124 0.5536 39 1 5.5197 -7.5839 1.2078 40 1 8.9755 -7.9034 -1.0807 41 1 8.1232 -6.8523 -2.2471 42 1 10.3131 -6.0168 -0.7702 43 1 9.0356 -4.8995 -1.3444 44 1 6.7411 -4.9576 0.2813 45 1 6.8969 -6.1038 1.6495 46 1 2.9289 -8.1271 -1.4067 47 1 3.9304 -7.3394 -2.6490 48 1 2.0768 -5.8379 -2.1691 49 1 3.5309 -5.1282 -1.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196925240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = -115.473828 kcal Electronic energy + Delta-G solvation = -31862.385222 eV Core-core repulsion = 27545.529426 eV Total energy + Delta-G solvation = -4316.855796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.71701 -40.62682 -39.07595 -37.40281 -36.46309 -35.00873 -33.77933 -32.49552 -31.31736 -30.14731 -28.80765 -28.40165 -26.56495 -25.62580 -24.12474 -22.75432 -21.09141 -20.83271 -20.54399 -19.21101 -18.54497 -17.95025 -17.66387 -16.61745 -16.23030 -16.02767 -15.67392 -15.37922 -15.17422 -15.06393 -14.86185 -14.60722 -14.18947 -13.99873 -13.83511 -13.63892 -13.39203 -13.28767 -12.79268 -12.74916 -12.15846 -12.06156 -11.81437 -11.60088 -11.54159 -11.52513 -11.39172 -11.22807 -11.11287 -11.06706 -10.96877 -10.94433 -10.72214 -10.64754 -10.49214 -10.42085 -10.26034 -9.58389 -9.51046 -9.03643 -8.53797 -8.00480 -7.46014 -6.45564 -3.86694 2.67078 3.06267 3.14128 3.23377 3.28801 3.84733 4.07709 4.14002 4.20984 4.26466 4.40939 4.58987 4.78052 4.88429 4.99134 5.00373 5.03160 5.18323 5.19737 5.21301 5.25939 5.29671 5.40245 5.40970 5.48350 5.63161 5.64949 5.68863 5.75744 5.77927 5.89034 5.95733 5.97185 6.01029 6.09153 6.11063 6.12143 6.13499 6.25637 6.53271 6.56595 6.82823 7.38260 7.41152 7.50807 7.76592 8.01152 8.28168 8.56145 9.13317 9.49785 10.00528 10.71213 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003473 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.879034 B = 8059.762410 C = 9573.799262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.101 0.899 9 N -0.559 5.559 10 C 0.406 3.594 11 O -0.593 6.593 12 C 0.049 3.951 13 N -0.535 5.535 14 C 0.074 3.926 15 C -0.132 4.132 16 C 0.107 3.893 17 N -0.603 5.603 18 C 0.517 3.483 19 O -0.533 6.533 20 C -0.113 4.113 21 H 0.094 0.906 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.083 3.917 25 H 0.095 0.905 26 F -0.210 7.210 27 C -0.135 4.135 28 C 0.122 3.878 29 C 0.047 3.953 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.511 -17.079 2.035 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.430 4.430 8 H 0.119 0.881 9 N -0.194 5.194 10 C 0.191 3.809 11 O -0.479 6.479 12 C -0.082 4.082 13 N -0.258 5.258 14 C -0.053 4.053 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.336 5.336 18 C 0.305 3.695 19 O -0.410 6.410 20 C -0.134 4.134 21 H 0.112 0.888 22 C -0.151 4.151 23 C -0.183 4.183 24 C 0.047 3.953 25 H 0.112 0.888 26 F -0.191 7.191 27 C -0.173 4.173 28 C -0.001 4.001 29 C -0.083 4.083 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.981 -17.064 1.479 19.824 hybrid contribution 0.011 1.605 0.155 1.613 sum 9.992 -15.459 1.634 18.479 Atomic orbital electron populations 1.69611 1.05936 1.28221 1.50290 1.25265 0.95611 0.99740 0.97183 0.85881 0.79229 0.80881 0.78451 1.20358 1.20850 1.19487 1.19689 0.93302 0.82423 1.47615 0.88120 1.42018 1.09236 1.04892 1.63302 1.21096 0.88950 0.86008 0.84839 1.90490 1.13834 1.87166 1.56441 1.22066 0.95021 0.87997 1.03165 1.58871 1.22118 1.42228 1.02598 1.21412 0.97401 0.94468 0.92051 1.21936 0.97044 0.98435 0.99666 1.22053 0.99712 0.97409 0.82367 1.47778 1.09641 1.60477 1.15660 1.20530 0.84612 0.77794 0.86559 1.90682 1.85643 1.41083 1.23562 1.21959 0.93894 1.00615 0.96954 0.88774 1.22114 0.93751 0.98253 1.00968 1.22944 1.00509 1.00066 0.94774 1.22480 0.91815 0.92078 0.88940 0.88753 1.92792 1.83566 1.70928 1.71816 1.22954 0.95690 0.98947 0.99746 1.21549 0.86545 0.98097 0.93910 1.21741 0.98269 0.97757 0.90509 0.91812 0.77447 0.89634 0.89430 0.92025 0.91797 0.90596 0.90369 0.91967 0.90274 0.91207 0.89361 0.90311 0.89337 0.88559 0.89668 0.90427 0.90009 0.90980 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.41 9.26 7.23 -10.99 -0.08 9.18 16 11 O -0.59 -15.27 12.19 5.54 0.07 -15.20 16 12 C 0.05 0.84 5.58 -4.97 -0.03 0.81 16 13 N -0.54 -8.42 3.99 -240.94 -0.96 -9.39 16 14 C 0.07 1.13 4.13 -5.08 -0.02 1.10 16 15 C -0.13 -1.42 5.80 -27.16 -0.16 -1.58 16 16 C 0.11 1.09 5.66 -2.98 -0.02 1.07 16 17 N -0.60 -7.91 2.18 -172.41 -0.38 -8.29 16 18 C 0.52 7.57 6.58 -10.99 -0.07 7.49 16 19 O -0.53 -9.81 15.06 5.56 0.08 -9.72 16 20 C -0.11 -1.29 2.34 -90.66 -0.21 -1.51 16 21 H 0.09 0.90 6.80 -51.93 -0.35 0.55 16 22 C -0.11 -1.23 6.33 -25.61 -0.16 -1.39 16 23 C -0.15 -1.47 6.63 -25.08 -0.17 -1.63 16 24 C 0.08 0.88 4.71 -24.70 -0.12 0.76 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 F -0.21 -2.46 17.21 2.25 0.04 -2.42 16 27 C -0.14 -1.58 5.75 -25.03 -0.14 -1.72 16 28 C 0.12 1.67 5.47 -3.97 -0.02 1.65 16 29 C 0.05 0.78 4.93 -5.74 -0.03 0.75 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 32 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 33 H 0.09 1.36 7.94 -51.93 -0.41 0.95 16 34 H 0.06 1.13 6.22 -51.93 -0.32 0.80 16 35 H 0.06 1.01 7.57 -51.93 -0.39 0.61 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.83 7.98 -51.93 -0.41 0.42 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.74 4.90 -51.93 -0.25 0.48 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.11 6.72 -51.93 -0.35 0.76 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.39 7.85 -51.93 -0.41 0.98 16 45 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 46 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 47 H 0.08 1.17 7.36 -51.93 -0.38 0.78 16 48 H 0.07 1.14 7.85 -51.93 -0.41 0.74 16 49 H 0.06 1.36 6.20 -51.93 -0.32 1.04 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -32.28 379.17 -8.86 -41.14 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.60 Total: 12.70 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.47 Total: 7.06 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.67 Total: -55.35 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.15 Total: -24.93 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.28 -8.86 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196925240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.330 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds