Wall clock time and date at job start Sat Apr 11 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48506 * 109.46776 * 269.99951 * 3 2 1 5 5 H 1.48498 * 109.46931 * 29.99377 * 3 2 1 6 6 H 1.48491 * 109.47174 * 149.99920 * 3 2 1 7 7 C 1.38954 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99832 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99953 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47065 * 174.69592 * 12 10 9 14 14 C 1.46197 * 110.99915 * 64.77383 * 13 12 10 15 15 C 1.51272 * 109.15712 * 144.71754 * 14 13 12 16 16 C 1.53859 * 109.57048 * 92.34218 * 15 14 13 17 17 N 1.47614 * 111.36832 * 320.04871 * 16 15 14 18 18 C 1.34777 * 118.74898 * 138.28220 * 17 16 15 19 19 O 1.21277 * 119.99585 * 185.36465 * 18 17 16 20 20 C 1.50693 * 120.00040 * 5.35947 * 18 17 16 21 21 H 1.09005 * 110.01859 * 33.16358 * 20 18 17 22 22 C 1.53879 * 110.03194 * 154.55111 * 20 18 17 23 23 C 1.54259 * 106.59761 * 119.28658 * 22 20 18 24 24 C 1.54886 * 104.19782 * 23.61103 * 23 22 20 25 25 H 1.09001 * 110.76344 * 203.74059 * 24 23 22 26 26 F 1.39901 * 110.75662 * 80.36973 * 24 23 22 27 27 C 1.54262 * 110.03549 * 271.77033 * 20 18 17 28 28 C 1.44887 * 122.50416 * 318.29707 * 17 16 15 29 29 C 1.41437 * 111.00241 * 293.73807 * 13 12 10 30 30 H 0.96999 * 119.99528 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99869 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47258 * 54.70081 * 12 10 9 33 33 H 1.08997 * 109.47025 * 294.69760 * 12 10 9 34 34 H 1.08997 * 109.53535 * 264.64495 * 14 13 12 35 35 H 1.09005 * 109.53035 * 24.80100 * 14 13 12 36 36 H 1.08997 * 109.44824 * 212.49699 * 15 14 13 37 37 H 1.08998 * 109.44881 * 332.40246 * 15 14 13 38 38 H 1.08996 * 109.10660 * 199.53211 * 16 15 14 39 39 H 1.09006 * 108.99798 * 80.47818 * 16 15 14 40 40 H 1.09003 * 110.03193 * 238.57205 * 22 20 18 41 41 H 1.08997 * 110.03276 * 0.02562 * 22 20 18 42 42 H 1.09004 * 110.48771 * 142.28733 * 23 22 20 43 43 H 1.08998 * 110.49035 * 264.93463 * 23 22 20 44 44 H 1.08997 * 110.48585 * 335.78466 * 27 20 18 45 45 H 1.09005 * 110.48599 * 98.42669 * 27 20 18 46 46 H 1.09005 * 109.43440 * 329.64195 * 28 17 16 47 47 H 1.08997 * 109.40216 * 209.75054 * 28 17 16 48 48 H 1.09005 * 109.38640 * 311.84354 * 29 13 12 49 49 H 1.08999 * 109.38617 * 71.63143 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1932 -5.9767 -0.1248 14 6 3.0716 -6.0517 1.0415 15 6 3.3699 -7.5032 1.3457 16 6 4.6630 -7.9253 0.6268 17 7 4.7376 -7.3472 -0.7294 18 6 5.9163 -6.8563 -1.1609 19 8 5.9817 -6.2891 -2.2308 20 6 7.1528 -7.0121 -0.3138 21 1 7.1104 -7.9504 0.2393 22 6 8.4083 -6.9807 -1.2030 23 6 9.2505 -5.7765 -0.7338 24 6 8.7975 -5.5428 0.7288 25 1 8.9863 -4.5130 1.0319 26 9 9.4327 -6.4401 1.5940 27 6 7.2753 -5.8265 0.6656 28 6 3.5919 -7.2871 -1.6143 29 6 2.8279 -5.9602 -1.3886 30 1 -0.4849 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.5480 -4.8813 -0.8368 33 1 0.6898 -4.9623 0.9357 34 1 4.0022 -5.5247 0.8313 35 1 2.5788 -5.5934 1.8990 36 1 3.4920 -7.6308 2.4213 37 1 2.5438 -8.1239 0.9987 38 1 4.6919 -9.0124 0.5536 39 1 5.5197 -7.5839 1.2078 40 1 8.9755 -7.9034 -1.0807 41 1 8.1232 -6.8523 -2.2471 42 1 10.3131 -6.0168 -0.7702 43 1 9.0356 -4.8995 -1.3444 44 1 6.7411 -4.9576 0.2813 45 1 6.8969 -6.1038 1.6495 46 1 2.9289 -8.1271 -1.4067 47 1 3.9304 -7.3394 -2.6490 48 1 2.0768 -5.8379 -2.1691 49 1 3.5309 -5.1282 -1.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196925240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:43 Heat of formation + Delta-G solvation = -137.212244 kcal Electronic energy + Delta-G solvation = -31863.327870 eV Core-core repulsion = 27545.529426 eV Total energy + Delta-G solvation = -4317.798444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.61507 -41.77623 -40.62669 -38.80279 -37.54215 -36.40365 -35.65204 -33.57287 -33.33529 -31.27783 -29.83455 -29.49845 -27.88279 -27.02499 -25.76285 -23.89034 -22.10475 -21.84112 -21.73412 -20.94027 -19.90978 -19.56063 -18.74267 -18.02003 -17.48008 -17.03369 -16.92379 -16.64823 -16.52718 -16.33180 -16.18035 -15.82796 -15.63479 -15.51288 -15.28036 -14.87339 -14.64175 -14.43013 -14.05381 -13.78233 -13.62396 -13.31899 -13.23347 -13.08236 -12.98651 -12.72035 -12.50217 -12.48504 -12.44561 -12.27100 -12.18187 -12.13471 -11.94363 -11.85640 -11.75762 -11.71798 -11.50502 -11.46800 -10.83497 -10.71240 -10.04088 -9.62441 -9.03481 -8.49755 -5.99699 1.31805 1.35882 1.48054 1.54960 2.00671 2.05940 2.25074 2.96809 3.16115 3.16764 3.24865 3.31935 3.46378 3.71265 3.84661 3.96942 4.02871 4.14771 4.21917 4.23890 4.27001 4.31407 4.36126 4.40053 4.42767 4.49809 4.55052 4.57123 4.64625 4.71213 4.73838 4.79824 4.91146 4.91849 4.98235 5.04925 5.10832 5.17555 5.22693 5.27074 5.35227 5.41862 5.70991 5.90114 6.06980 6.29760 6.46393 6.55827 7.08548 7.17834 7.52379 8.08090 8.65703 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003473 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.879034 B = 8059.762410 C = 9573.799262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.333 4.333 8 H 0.072 0.928 9 N -0.572 5.572 10 C 0.405 3.595 11 O -0.625 6.625 12 C 0.056 3.944 13 N -0.516 5.516 14 C 0.073 3.927 15 C -0.121 4.121 16 C 0.101 3.899 17 N -0.603 5.603 18 C 0.508 3.492 19 O -0.584 6.584 20 C -0.107 4.107 21 H 0.124 0.876 22 C -0.113 4.113 23 C -0.144 4.144 24 C 0.088 3.912 25 H 0.103 0.897 26 F -0.211 7.211 27 C -0.133 4.133 28 C 0.130 3.870 29 C 0.052 3.948 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -19.332 3.450 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.090 0.910 9 N -0.209 5.209 10 C 0.192 3.808 11 O -0.512 6.512 12 C -0.076 4.076 13 N -0.238 5.238 14 C -0.055 4.055 15 C -0.159 4.159 16 C -0.020 4.020 17 N -0.334 5.334 18 C 0.297 3.703 19 O -0.464 6.464 20 C -0.128 4.128 21 H 0.142 0.858 22 C -0.151 4.151 23 C -0.181 4.181 24 C 0.051 3.949 25 H 0.121 0.879 26 F -0.192 7.192 27 C -0.171 4.171 28 C 0.006 3.994 29 C -0.079 4.079 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 9.929 -19.355 2.928 21.950 hybrid contribution 0.014 2.284 -0.282 2.301 sum 9.943 -17.071 2.646 19.932 Atomic orbital electron populations 1.69663 1.06709 1.29297 1.50183 1.25982 0.96510 1.02246 0.96273 0.85002 0.77935 0.77267 0.78584 1.19877 1.19130 1.19998 1.19576 0.92388 0.84353 1.49971 0.91001 1.42091 1.09312 1.04930 1.64528 1.22260 0.88880 0.87316 0.82336 1.90495 1.15777 1.87959 1.57019 1.22188 0.95101 0.84966 1.05311 1.59106 1.21809 1.40316 1.02531 1.21481 0.95290 0.97456 0.91224 1.21882 0.97685 0.94786 1.01557 1.22344 0.99800 0.99305 0.80540 1.47946 1.08935 1.59759 1.16774 1.21162 0.85967 0.76902 0.86245 1.90653 1.86525 1.43283 1.25914 1.22016 0.92533 1.01642 0.96600 0.85774 1.22130 0.93822 0.99597 0.99548 1.22938 1.01558 0.99452 0.94184 1.22446 0.90791 0.92477 0.89148 0.87868 1.92788 1.83464 1.71045 1.71887 1.22869 0.96352 0.97674 1.00194 1.21448 0.86930 0.97193 0.93817 1.21669 0.97378 0.97651 0.91171 0.91236 0.77017 0.87674 0.86834 0.95826 0.92582 0.87836 0.89121 0.88338 0.89445 0.88875 0.91599 0.88376 0.90473 0.92327 0.88368 0.87151 0.91081 0.90559 0.97636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.94 13.05 21.66 0.28 -49.65 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 10 C 0.41 19.12 7.23 87.66 0.63 19.75 16 11 O -0.63 -34.09 12.19 -3.08 -0.04 -34.13 16 12 C 0.06 1.88 5.58 85.56 0.48 2.36 16 13 N -0.52 -15.80 3.99 -916.21 -3.66 -19.46 16 14 C 0.07 2.15 4.13 85.87 0.35 2.51 16 15 C -0.12 -2.19 5.80 30.32 0.18 -2.02 16 16 C 0.10 1.72 5.66 86.46 0.49 2.21 16 17 N -0.60 -15.26 2.18 -817.77 -1.79 -17.05 16 18 C 0.51 15.13 6.58 87.65 0.58 15.71 16 19 O -0.58 -22.87 15.06 -3.02 -0.05 -22.91 16 20 C -0.11 -2.37 2.34 -10.82 -0.03 -2.39 16 21 H 0.12 1.99 6.80 -2.38 -0.02 1.98 16 22 C -0.11 -2.39 6.33 31.32 0.20 -2.19 16 23 C -0.14 -2.84 6.63 31.67 0.21 -2.63 16 24 C 0.09 1.79 4.71 31.91 0.15 1.94 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 F -0.21 -4.49 17.21 44.97 0.77 -3.72 16 27 C -0.13 -3.11 5.75 31.69 0.18 -2.93 16 28 C 0.13 3.46 5.47 87.29 0.48 3.93 16 29 C 0.05 1.75 4.93 87.91 0.43 2.18 16 30 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.40 19.45 7.90 -92.71 -0.73 18.71 16 32 H 0.11 3.19 7.92 -2.39 -0.02 3.17 16 33 H 0.11 3.32 7.94 -2.39 -0.02 3.30 16 34 H 0.02 0.88 6.22 -2.39 -0.01 0.87 16 35 H 0.06 1.72 7.57 -2.38 -0.02 1.70 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.50 7.98 -2.39 -0.02 1.48 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.36 4.90 -2.38 -0.01 1.35 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.72 6.72 -2.39 -0.02 1.70 16 42 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.83 7.85 -2.39 -0.02 1.81 16 45 H 0.10 1.99 7.35 -2.38 -0.02 1.97 16 46 H 0.11 2.24 8.11 -2.38 -0.02 2.22 16 47 H 0.07 2.06 7.36 -2.39 -0.02 2.04 16 48 H 0.08 2.45 7.85 -2.38 -0.02 2.43 16 49 H 0.01 0.25 6.20 -2.39 -0.01 0.23 16 Total: -1.00 -75.33 379.17 1.79 -73.54 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.24 Total: 38.78 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 5.61 Total: 19.96 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -6.79 Total: -117.32 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.08 Total: -57.04 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -75.33 1.79 -73.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196925240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.674 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds