Wall clock time and date at job start Sat Apr 11 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47082 * 299.99727 * 3 2 1 6 6 H 1.48502 * 109.47137 * 59.99873 * 3 2 1 7 7 C 1.38958 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00212 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99834 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00115 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46919 * 174.37327 * 12 10 9 14 14 C 1.46203 * 111.00156 * 64.74987 * 13 12 10 15 15 C 1.51271 * 109.09413 * 144.75742 * 14 13 12 16 16 C 1.53833 * 109.63825 * 92.40537 * 15 14 13 17 17 N 1.47610 * 111.28702 * 319.97674 * 16 15 14 18 18 C 1.34777 * 118.74415 * 138.30698 * 17 16 15 19 19 O 1.21283 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99976 * 359.97438 * 18 17 16 21 21 C 1.53008 * 109.47081 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47170 * 179.97438 * 21 20 18 23 23 C 1.34777 * 120.00065 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00180 * 180.02562 * 23 22 21 25 25 O 1.21590 * 120.00010 * 359.97438 * 23 22 21 26 26 C 1.44883 * 122.50837 * 318.28847 * 17 16 15 27 27 C 1.41441 * 111.00187 * 293.71163 * 13 12 10 28 28 H 0.96991 * 119.99772 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99498 * 359.97438 * 9 7 2 30 30 H 1.08990 * 109.47239 * 54.37422 * 12 10 9 31 31 H 1.09006 * 109.46575 * 294.36887 * 12 10 9 32 32 H 1.08994 * 109.53528 * 264.64345 * 14 13 12 33 33 H 1.09000 * 109.53401 * 24.87342 * 14 13 12 34 34 H 1.09004 * 109.44706 * 212.45905 * 15 14 13 35 35 H 1.08994 * 109.44911 * 332.36614 * 15 14 13 36 36 H 1.08999 * 109.12595 * 199.50957 * 16 15 14 37 37 H 1.09009 * 109.06445 * 80.40913 * 16 15 14 38 38 H 1.09003 * 109.47308 * 299.99600 * 20 18 17 39 39 H 1.08998 * 109.47237 * 60.00105 * 20 18 17 40 40 H 1.08998 * 109.47218 * 300.00398 * 21 20 18 41 41 H 1.09008 * 109.46889 * 60.00221 * 21 20 18 42 42 H 0.96999 * 120.00139 * 0.02562 * 22 21 20 43 43 H 0.96999 * 120.00024 * 0.02562 * 24 23 22 44 44 H 0.96995 * 120.00005 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.43352 * 329.67481 * 26 17 16 46 46 H 1.08993 * 109.43477 * 209.80576 * 26 17 16 47 47 H 1.08994 * 109.38913 * 311.84835 * 27 13 12 48 48 H 1.09003 * 109.38722 * 71.53425 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1927 -5.9762 -0.1334 14 6 3.0764 -6.0547 1.0287 15 6 3.3759 -7.5075 1.3254 16 6 4.6662 -7.9277 0.6009 17 7 4.7345 -7.3448 -0.7535 18 6 5.9112 -6.8525 -1.1887 19 8 5.9932 -6.3688 -2.2979 20 6 7.1251 -6.9030 -0.2971 21 6 8.3196 -6.2843 -1.0262 22 7 9.4995 -6.3328 -0.1593 23 6 10.6762 -5.8404 -0.5944 24 7 11.7618 -5.8855 0.2030 25 8 10.7586 -5.3563 -1.7067 26 6 3.5849 -7.2822 -1.6331 27 6 2.8218 -5.9558 -1.4001 28 1 -0.4849 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.5447 -4.8785 -0.8351 31 1 0.6938 -4.9653 0.9366 32 1 4.0060 -5.5270 0.8160 33 1 2.5869 -5.6002 1.8901 34 1 3.5035 -7.6396 2.3998 35 1 2.5480 -8.1266 0.9799 36 1 4.6946 -9.0146 0.5235 37 1 5.5258 -7.5887 1.1792 38 1 6.9278 -6.3437 0.6174 39 1 7.3497 -7.9400 -0.0475 40 1 8.5168 -6.8439 -1.9406 41 1 8.0952 -5.2472 -1.2762 42 1 9.4339 -6.7194 0.7279 43 1 11.6964 -6.2727 1.0899 44 1 12.6086 -5.5308 -0.1101 45 1 2.9230 -8.1228 -1.4252 46 1 3.9182 -7.3315 -2.6696 47 1 2.0674 -5.8313 -2.1768 48 1 3.5234 -5.1226 -1.4423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198054245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:46 Heat of formation + Delta-G solvation = -88.514819 kcal Electronic energy + Delta-G solvation = -30752.443980 eV Core-core repulsion = 26456.677176 eV Total energy + Delta-G solvation = -4295.766804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.53585 -39.88371 -38.91448 -37.17904 -35.29443 -35.02525 -33.86879 -33.77518 -32.55659 -31.32992 -30.97090 -28.96342 -26.64302 -25.78632 -24.50129 -23.64458 -21.89426 -21.37079 -20.60866 -19.24769 -19.02208 -18.27884 -17.89786 -17.58230 -17.03847 -16.48408 -16.25359 -15.69932 -15.40857 -15.26612 -15.04461 -14.81372 -14.50747 -14.27082 -14.15424 -13.85146 -13.74207 -13.55543 -13.28625 -13.09300 -12.66311 -12.14453 -12.06378 -11.81839 -11.70544 -11.52207 -11.44858 -11.25092 -11.09476 -11.03234 -10.74236 -10.56757 -10.50905 -10.35753 -10.25376 -9.93690 -9.73075 -9.52362 -9.21148 -9.03947 -8.58284 -7.99643 -7.47219 -6.44649 -3.85673 2.55571 2.67110 3.04726 3.12132 3.14090 3.25520 3.33130 3.85198 4.15321 4.18748 4.26515 4.52371 4.58695 4.75936 4.84538 4.95457 5.00191 5.13482 5.20306 5.22345 5.39311 5.47864 5.61803 5.65872 5.71235 5.76403 5.84751 5.86744 5.96147 6.00555 6.09573 6.10631 6.22604 6.25573 6.46105 6.50883 6.52409 6.66618 6.79480 7.33087 7.38093 7.52480 7.72281 7.74896 8.02531 8.21866 8.43030 8.56894 9.14557 9.50627 10.01199 10.72178 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008864 B = 0.003066 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.012340 B = 9130.438909 C =11474.139613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.559 5.559 10 C 0.405 3.595 11 O -0.593 6.593 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.074 3.926 15 C -0.133 4.133 16 C 0.109 3.891 17 N -0.603 5.603 18 C 0.516 3.484 19 O -0.531 6.531 20 C -0.152 4.152 21 C 0.151 3.849 22 N -0.746 5.746 23 C 0.704 3.296 24 N -0.869 5.869 25 O -0.589 6.589 26 C 0.122 3.878 27 C 0.046 3.954 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.395 0.605 43 H 0.395 0.605 44 H 0.414 0.586 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 -20.008 6.609 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.195 5.195 10 C 0.190 3.810 11 O -0.479 6.479 12 C -0.082 4.082 13 N -0.259 5.259 14 C -0.054 4.054 15 C -0.171 4.171 16 C -0.014 4.014 17 N -0.336 5.336 18 C 0.303 3.697 19 O -0.407 6.407 20 C -0.192 4.192 21 C 0.027 3.973 22 N -0.402 5.402 23 C 0.402 3.598 24 N -0.438 5.438 25 O -0.467 6.467 26 C -0.001 4.001 27 C -0.084 4.084 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.228 0.772 43 H 0.223 0.777 44 H 0.246 0.754 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.268 -19.623 5.004 23.175 hybrid contribution 0.317 1.450 0.957 1.766 sum 11.585 -18.173 5.961 22.361 Atomic orbital electron populations 1.69615 1.05939 1.28132 1.50389 1.25272 0.95621 0.99773 0.97184 0.85824 0.79755 0.81168 0.77769 1.19252 1.20645 1.20710 1.19750 0.93360 0.82396 1.47451 0.88028 1.42026 1.09244 1.04914 1.63268 1.21097 0.88952 0.86021 0.84890 1.90499 1.13836 1.87161 1.56435 1.22064 0.95013 0.87987 1.03171 1.58888 1.22089 1.42276 1.02603 1.21413 0.97345 0.94415 0.92179 1.21938 0.97133 0.98453 0.99621 1.22035 0.99680 0.97382 0.82293 1.47767 1.09569 1.60365 1.15943 1.20277 0.84285 0.77708 0.87475 1.90751 1.84896 1.43909 1.21189 1.21840 0.93759 1.03367 1.00269 1.20918 0.81301 1.02794 0.92285 1.45056 1.09127 1.66254 1.19784 1.15943 0.80614 0.78939 0.84325 1.42981 1.12083 1.69118 1.19602 1.91013 1.84519 1.51205 1.19919 1.21556 0.86260 0.98079 0.94231 1.21753 0.98402 0.97700 0.90499 0.91863 0.77444 0.89601 0.89419 0.92085 0.91752 0.90623 0.90331 0.91836 0.90410 0.88072 0.88513 0.90620 0.90312 0.77187 0.77703 0.75395 0.90359 0.89705 0.90843 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 10 C 0.41 9.28 7.22 -10.99 -0.08 9.20 16 11 O -0.59 -15.42 12.19 5.55 0.07 -15.36 16 12 C 0.05 0.84 5.58 -4.98 -0.03 0.81 16 13 N -0.54 -8.29 3.99 -240.94 -0.96 -9.25 16 14 C 0.07 1.08 4.13 -5.07 -0.02 1.06 16 15 C -0.13 -1.30 5.78 -27.17 -0.16 -1.46 16 16 C 0.11 0.94 5.99 -3.00 -0.02 0.93 16 17 N -0.60 -7.42 2.18 -172.43 -0.38 -7.79 16 18 C 0.52 7.19 7.63 -10.98 -0.08 7.10 16 19 O -0.53 -9.78 15.41 5.56 0.09 -9.69 16 20 C -0.15 -1.45 4.15 -27.88 -0.12 -1.56 16 21 C 0.15 1.82 4.96 -4.04 -0.02 1.80 16 22 N -0.75 -6.85 5.56 -65.22 -0.36 -7.21 16 23 C 0.70 8.18 8.84 -86.92 -0.77 7.41 16 24 N -0.87 -5.68 8.88 27.64 0.25 -5.43 16 25 O -0.59 -10.17 17.18 5.29 0.09 -10.08 16 26 C 0.12 1.62 5.51 -3.97 -0.02 1.60 16 27 C 0.05 0.76 4.93 -5.74 -0.03 0.73 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 30 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 31 H 0.09 1.35 7.94 -51.93 -0.41 0.93 16 32 H 0.06 1.09 6.22 -51.93 -0.32 0.77 16 33 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 5.87 -51.92 -0.30 0.24 16 38 H 0.10 0.86 7.41 -51.93 -0.38 0.48 16 39 H 0.10 0.60 8.04 -51.93 -0.42 0.18 16 40 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.08 1.22 8.10 -51.92 -0.42 0.80 16 42 H 0.39 2.06 8.49 -40.82 -0.35 1.71 16 43 H 0.40 1.17 8.84 -40.82 -0.36 0.81 16 44 H 0.41 2.40 8.93 -40.82 -0.36 2.03 16 45 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 46 H 0.08 1.19 7.28 -51.93 -0.38 0.81 16 47 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 48 H 0.06 1.35 6.21 -51.93 -0.32 1.02 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -38.11 385.03 -8.53 -46.64 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.18 Total: 14.35 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: -1.58 Total: 19.61 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -0.79 Total: -67.63 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: 0.24 Total: -35.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.11 -8.53 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198054245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.878 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds