Wall clock time and date at job start Sat Apr 11 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47082 * 299.99727 * 3 2 1 6 6 H 1.48502 * 109.47137 * 59.99873 * 3 2 1 7 7 C 1.38958 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00212 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99834 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00115 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46919 * 174.37327 * 12 10 9 14 14 C 1.46203 * 111.00156 * 64.74987 * 13 12 10 15 15 C 1.51271 * 109.09413 * 144.75742 * 14 13 12 16 16 C 1.53833 * 109.63825 * 92.40537 * 15 14 13 17 17 N 1.47610 * 111.28702 * 319.97674 * 16 15 14 18 18 C 1.34777 * 118.74415 * 138.30698 * 17 16 15 19 19 O 1.21283 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99976 * 359.97438 * 18 17 16 21 21 C 1.53008 * 109.47081 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47170 * 179.97438 * 21 20 18 23 23 C 1.34777 * 120.00065 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00180 * 180.02562 * 23 22 21 25 25 O 1.21590 * 120.00010 * 359.97438 * 23 22 21 26 26 C 1.44883 * 122.50837 * 318.28847 * 17 16 15 27 27 C 1.41441 * 111.00187 * 293.71163 * 13 12 10 28 28 H 0.96991 * 119.99772 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99498 * 359.97438 * 9 7 2 30 30 H 1.08990 * 109.47239 * 54.37422 * 12 10 9 31 31 H 1.09006 * 109.46575 * 294.36887 * 12 10 9 32 32 H 1.08994 * 109.53528 * 264.64345 * 14 13 12 33 33 H 1.09000 * 109.53401 * 24.87342 * 14 13 12 34 34 H 1.09004 * 109.44706 * 212.45905 * 15 14 13 35 35 H 1.08994 * 109.44911 * 332.36614 * 15 14 13 36 36 H 1.08999 * 109.12595 * 199.50957 * 16 15 14 37 37 H 1.09009 * 109.06445 * 80.40913 * 16 15 14 38 38 H 1.09003 * 109.47308 * 299.99600 * 20 18 17 39 39 H 1.08998 * 109.47237 * 60.00105 * 20 18 17 40 40 H 1.08998 * 109.47218 * 300.00398 * 21 20 18 41 41 H 1.09008 * 109.46889 * 60.00221 * 21 20 18 42 42 H 0.96999 * 120.00139 * 0.02562 * 22 21 20 43 43 H 0.96999 * 120.00024 * 0.02562 * 24 23 22 44 44 H 0.96995 * 120.00005 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.43352 * 329.67481 * 26 17 16 46 46 H 1.08993 * 109.43477 * 209.80576 * 26 17 16 47 47 H 1.08994 * 109.38913 * 311.84835 * 27 13 12 48 48 H 1.09003 * 109.38722 * 71.53425 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1927 -5.9762 -0.1334 14 6 3.0764 -6.0547 1.0287 15 6 3.3759 -7.5075 1.3254 16 6 4.6662 -7.9277 0.6009 17 7 4.7345 -7.3448 -0.7535 18 6 5.9112 -6.8525 -1.1887 19 8 5.9932 -6.3688 -2.2979 20 6 7.1251 -6.9030 -0.2971 21 6 8.3196 -6.2843 -1.0262 22 7 9.4995 -6.3328 -0.1593 23 6 10.6762 -5.8404 -0.5944 24 7 11.7618 -5.8855 0.2030 25 8 10.7586 -5.3563 -1.7067 26 6 3.5849 -7.2822 -1.6331 27 6 2.8218 -5.9558 -1.4001 28 1 -0.4849 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.5447 -4.8785 -0.8351 31 1 0.6938 -4.9653 0.9366 32 1 4.0060 -5.5270 0.8160 33 1 2.5869 -5.6002 1.8901 34 1 3.5035 -7.6396 2.3998 35 1 2.5480 -8.1266 0.9799 36 1 4.6946 -9.0146 0.5235 37 1 5.5258 -7.5887 1.1792 38 1 6.9278 -6.3437 0.6174 39 1 7.3497 -7.9400 -0.0475 40 1 8.5168 -6.8439 -1.9406 41 1 8.0952 -5.2472 -1.2762 42 1 9.4339 -6.7194 0.7279 43 1 11.6964 -6.2727 1.0899 44 1 12.6086 -5.5308 -0.1101 45 1 2.9230 -8.1228 -1.4252 46 1 3.9182 -7.3315 -2.6696 47 1 2.0674 -5.8313 -2.1768 48 1 3.5234 -5.1226 -1.4423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198054245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:46 Heat of formation + Delta-G solvation = -123.354083 kcal Electronic energy + Delta-G solvation = -30753.954723 eV Core-core repulsion = 26456.677176 eV Total energy + Delta-G solvation = -4297.277547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64629 -40.89310 -40.42642 -38.61584 -36.39521 -36.27793 -35.65046 -34.70072 -33.55473 -33.34356 -31.94382 -30.23386 -27.96983 -27.03921 -26.03927 -24.83309 -22.92759 -22.28944 -21.88777 -20.94375 -20.01725 -19.87266 -19.13385 -18.48705 -17.99731 -17.90898 -17.35410 -17.01941 -16.66112 -16.48977 -16.42631 -16.13595 -15.76962 -15.55781 -15.50617 -15.20911 -14.95297 -14.93188 -14.41211 -14.23981 -13.93991 -13.61327 -13.30879 -13.10707 -13.03384 -12.98490 -12.70115 -12.52129 -12.47889 -12.29191 -12.20371 -12.16485 -11.73607 -11.67738 -11.61060 -11.49724 -10.86077 -10.81089 -10.79248 -10.07139 -10.04423 -9.59844 -9.03036 -8.50607 -6.00431 1.29793 1.35442 1.49017 1.59072 1.73671 2.00240 2.11590 2.24518 2.25021 2.99003 3.15257 3.25014 3.46123 3.69073 3.78972 3.92340 4.01033 4.06337 4.25454 4.27475 4.33477 4.38946 4.48880 4.52441 4.59149 4.65766 4.77911 4.78440 4.84779 4.87396 4.95646 5.00361 5.14590 5.24950 5.35270 5.35380 5.45574 5.72584 5.87131 5.90105 6.00123 6.07941 6.31458 6.48354 6.55240 7.08200 7.09405 7.19345 7.52041 7.62188 8.07857 8.65008 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008864 B = 0.003066 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.012340 B = 9130.438909 C =11474.139613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.332 4.332 8 H 0.071 0.929 9 N -0.572 5.572 10 C 0.405 3.595 11 O -0.626 6.626 12 C 0.056 3.944 13 N -0.516 5.516 14 C 0.072 3.928 15 C -0.122 4.122 16 C 0.101 3.899 17 N -0.602 5.602 18 C 0.501 3.499 19 O -0.592 6.592 20 C -0.135 4.135 21 C 0.159 3.841 22 N -0.726 5.726 23 C 0.695 3.305 24 N -0.843 5.843 25 O -0.654 6.654 26 C 0.130 3.870 27 C 0.051 3.949 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.419 0.581 43 H 0.417 0.583 44 H 0.420 0.580 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 -22.744 9.347 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.462 4.462 8 H 0.089 0.911 9 N -0.209 5.209 10 C 0.192 3.808 11 O -0.514 6.514 12 C -0.075 4.075 13 N -0.238 5.238 14 C -0.056 4.056 15 C -0.160 4.160 16 C -0.020 4.020 17 N -0.334 5.334 18 C 0.290 3.710 19 O -0.473 6.473 20 C -0.174 4.174 21 C 0.034 3.966 22 N -0.384 5.384 23 C 0.392 3.608 24 N -0.412 5.412 25 O -0.536 6.536 26 C 0.006 3.994 27 C -0.080 4.080 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.257 0.743 43 H 0.248 0.752 44 H 0.253 0.747 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 11.089 -22.430 7.872 26.230 hybrid contribution 0.391 2.266 0.142 2.304 sum 11.480 -20.164 8.014 24.548 Atomic orbital electron populations 1.69662 1.06651 1.29244 1.50254 1.25977 0.96529 1.02230 0.96312 0.84952 0.77781 0.77505 0.78577 1.20445 1.19609 1.19030 1.19600 0.92352 0.84391 1.49876 0.91109 1.42100 1.09339 1.04941 1.64544 1.22306 0.88876 0.87367 0.82265 1.90499 1.15851 1.87989 1.57045 1.22187 0.95121 0.84899 1.05315 1.59136 1.21862 1.40211 1.02593 1.21513 0.95134 0.97774 0.91146 1.21888 0.98010 0.94340 1.01771 1.22415 1.00033 0.99415 0.80106 1.47944 1.08592 1.59557 1.17270 1.21108 0.85929 0.76674 0.87286 1.90726 1.85971 1.46528 1.24030 1.21785 0.90333 1.06277 0.99027 1.20585 0.83364 0.99865 0.92831 1.44717 1.07616 1.65694 1.20398 1.16277 0.81886 0.78637 0.83958 1.42712 1.10814 1.67852 1.19855 1.90974 1.85616 1.54005 1.22985 1.21412 0.86843 0.97038 0.94094 1.21681 0.97431 0.97669 0.91191 0.91216 0.76972 0.87779 0.86699 0.95912 0.92585 0.87552 0.89417 0.87989 0.88193 0.86339 0.83530 0.92671 0.95095 0.74318 0.75158 0.74671 0.86988 0.91195 0.90691 0.97912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.24 13.05 21.67 0.28 -49.96 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 8 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 9 N -0.57 -29.77 5.29 -306.99 -1.62 -31.40 16 10 C 0.40 19.18 7.22 87.66 0.63 19.81 16 11 O -0.63 -34.41 12.19 -3.07 -0.04 -34.45 16 12 C 0.06 1.88 5.58 85.56 0.48 2.36 16 13 N -0.52 -15.47 3.99 -916.21 -3.66 -19.12 16 14 C 0.07 2.00 4.13 85.87 0.35 2.36 16 15 C -0.12 -1.88 5.78 30.31 0.18 -1.70 16 16 C 0.10 1.30 5.99 86.45 0.52 1.82 16 17 N -0.60 -13.87 2.18 -817.82 -1.79 -15.66 16 18 C 0.50 14.06 7.63 87.66 0.67 14.73 16 19 O -0.59 -23.46 15.41 -3.04 -0.05 -23.51 16 20 C -0.13 -2.34 4.15 29.85 0.12 -2.22 16 21 C 0.16 3.97 4.96 86.38 0.43 4.40 16 22 N -0.73 -12.65 5.56 -478.52 -2.66 -15.31 16 23 C 0.69 16.06 8.84 179.05 1.58 17.64 16 24 N -0.84 -9.66 8.88 -184.74 -1.64 -11.30 16 25 O -0.65 -23.75 17.18 -4.00 -0.07 -23.81 16 26 C 0.13 3.35 5.51 87.29 0.48 3.84 16 27 C 0.05 1.70 4.93 87.91 0.43 2.14 16 28 H 0.28 14.21 8.31 -92.72 -0.77 13.44 16 29 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 30 H 0.10 3.16 7.92 -2.39 -0.02 3.14 16 31 H 0.12 3.30 7.94 -2.38 -0.02 3.28 16 32 H 0.02 0.82 6.22 -2.39 -0.01 0.80 16 33 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 34 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 1.27 7.98 -2.39 -0.02 1.25 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.88 5.87 -2.38 -0.01 0.86 16 38 H 0.12 1.72 7.41 -2.39 -0.02 1.70 16 39 H 0.15 1.13 8.04 -2.39 -0.02 1.11 16 40 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.03 1.06 8.10 -2.38 -0.02 1.04 16 42 H 0.42 3.10 8.49 -92.71 -0.79 2.31 16 43 H 0.42 1.26 8.84 -92.71 -0.82 0.44 16 44 H 0.42 4.31 8.93 -92.71 -0.83 3.49 16 45 H 0.11 2.15 8.11 -2.39 -0.02 2.13 16 46 H 0.07 2.03 7.28 -2.39 -0.02 2.01 16 47 H 0.07 2.42 7.85 -2.39 -0.02 2.40 16 48 H 0.00 0.12 6.21 -2.39 -0.01 0.11 16 Total: -1.00 -93.44 385.03 -4.18 -97.62 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -2.13 Total: 33.92 kcal Atomic # 6 Polarization: 39.33 SS G_CDS: 7.16 Total: 46.49 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -11.08 Total: -142.74 kcal Atomic # 8 Polarization: -81.62 SS G_CDS: -0.15 Total: -81.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -93.44 -4.18 -97.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198054245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.739 kcal (2) G-P(sol) polarization free energy of solvation -93.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds