Wall clock time and date at job start Sat Apr 11 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48498 * 109.46791 * 239.99081 * 3 2 1 5 5 H 1.48500 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47366 * 119.99467 * 3 2 1 7 7 C 1.37881 * 120.00049 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.85202 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53725 * 128.62098 * 8 7 2 10 10 C 1.52964 * 109.40054 * 54.63315 * 9 8 7 11 11 H 1.08997 * 109.41607 * 56.43338 * 10 9 8 12 12 N 1.46503 * 109.41252 * 176.29239 * 10 9 8 13 13 C 1.34776 * 119.99818 * 204.99711 * 12 10 9 14 14 S 1.71201 * 120.00259 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99796 * 180.02562 * 13 12 10 16 16 C 1.46497 * 119.99865 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47321 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47154 * 180.02562 * 17 16 15 19 19 N 1.46908 * 109.46719 * 179.97438 * 18 17 16 20 20 C 1.47024 * 110.99261 * 66.32173 * 19 18 17 21 21 C 1.53103 * 109.24985 * 182.34870 * 20 19 18 22 22 O 1.43012 * 109.29295 * 303.21723 * 21 20 19 23 23 C 1.43011 * 113.74271 * 58.65008 * 22 21 20 24 24 C 1.47018 * 110.99661 * 189.99712 * 19 18 17 25 25 C 1.52958 * 109.81774 * 296.39833 * 10 9 8 26 26 C 1.51265 * 120.84774 * 179.97438 * 7 2 1 27 27 H 0.97001 * 120.00290 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.62499 * 8.91248 * 8 7 2 29 29 H 1.08991 * 109.62725 * 248.34584 * 8 7 2 30 30 H 1.08997 * 109.48808 * 294.65015 * 9 8 7 31 31 H 1.09002 * 109.49149 * 174.61291 * 9 8 7 32 32 H 0.96998 * 119.99849 * 25.00244 * 12 10 9 33 33 H 0.96993 * 119.99833 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47180 * 59.99964 * 16 15 13 35 35 H 1.09004 * 109.46985 * 299.99948 * 16 15 13 36 36 H 1.09002 * 109.47075 * 59.99836 * 17 16 15 37 37 H 1.09002 * 109.46559 * 300.00177 * 17 16 15 38 38 H 1.09001 * 109.47059 * 60.00339 * 18 17 16 39 39 H 1.08995 * 109.46804 * 299.99577 * 18 17 16 40 40 H 1.08998 * 109.47369 * 62.43595 * 20 19 18 41 41 H 1.08998 * 109.54483 * 302.29802 * 20 19 18 42 42 H 1.09002 * 109.50635 * 183.25881 * 21 20 19 43 43 H 1.09003 * 109.50698 * 63.17493 * 21 20 19 44 44 H 1.08997 * 109.50806 * 61.26171 * 23 22 21 45 45 H 1.08997 * 109.50924 * 181.35636 * 23 22 21 46 46 H 1.08994 * 109.50209 * 57.67478 * 24 19 18 47 47 H 1.08997 * 109.50514 * 297.54292 * 24 19 18 48 48 H 1.08990 * 109.48677 * 183.58066 * 25 10 9 49 49 H 1.09006 * 109.47861 * 303.62184 * 25 10 9 50 50 H 1.09004 * 109.62783 * 351.08957 * 26 7 2 51 51 H 1.08995 * 109.62786 * 111.66166 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1941 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8229 -3.3826 -1.1341 10 6 3.3400 -3.5070 -0.9829 11 1 3.5740 -3.9111 0.0019 12 7 3.8599 -4.4075 -2.0149 13 6 5.0174 -5.0675 -1.8124 14 16 5.8806 -4.8530 -0.3495 15 7 5.4960 -5.8956 -2.7620 16 6 6.7539 -6.6134 -2.5416 17 6 7.0686 -7.4782 -3.7640 18 6 8.3820 -8.2283 -3.5335 19 7 8.6837 -9.0591 -4.7070 20 6 8.9657 -8.2250 -5.8844 21 6 9.2165 -9.1285 -7.0947 22 8 10.2876 -10.0285 -6.7986 23 6 10.0453 -10.8567 -5.6581 24 6 9.8040 -9.9708 -4.4330 25 6 3.9907 -2.1310 -1.1341 26 6 3.5170 -1.2164 0.0000 27 1 -0.4850 0.8400 -0.0004 28 1 0.2036 -2.3409 -0.1590 29 1 1.4200 -3.0192 0.9549 30 1 1.5898 -2.9197 -2.0930 31 1 1.3707 -4.3733 -1.0891 32 1 3.3711 -4.5287 -2.8439 33 1 5.0072 -6.0169 -3.5909 34 1 6.6602 -7.2489 -1.6610 35 1 7.5597 -5.8956 -2.3877 36 1 7.1624 -6.8424 -4.6444 37 1 6.2629 -8.1959 -3.9183 38 1 8.2876 -8.8642 -2.6533 39 1 9.1878 -7.5109 -3.3790 40 1 9.8499 -7.6163 -5.6952 41 1 8.1127 -7.5767 -6.0848 42 1 9.4828 -8.5167 -7.9567 43 1 8.3138 -9.6976 -7.3173 44 1 9.1666 -11.4760 -5.8381 45 1 10.9108 -11.4952 -5.4815 46 1 9.5624 -10.5961 -3.5735 47 1 10.7020 -9.3905 -4.2209 48 1 5.0748 -2.2346 -1.0890 49 1 3.7063 -1.6977 -2.0930 50 1 3.8981 -0.2078 -0.1599 51 1 3.8779 -1.6001 0.9542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199954121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:51 Heat of formation + Delta-G solvation = -42.251150 kcal Electronic energy + Delta-G solvation = -27119.613004 eV Core-core repulsion = 23372.145558 eV Total energy + Delta-G solvation = -3747.467446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10414 -39.15234 -37.46989 -36.45043 -34.55014 -32.46546 -31.71094 -31.26185 -29.74575 -28.20699 -27.06446 -24.72973 -24.51841 -23.53306 -22.23136 -21.65340 -21.48626 -20.85845 -19.67645 -18.04746 -17.38691 -16.69203 -16.65927 -16.19361 -16.00835 -15.58052 -15.37467 -15.09707 -15.03273 -14.72285 -14.47212 -14.15642 -13.97872 -13.32152 -13.02492 -12.84284 -12.62015 -12.50775 -12.17775 -12.12398 -12.04654 -11.88952 -11.72168 -11.52449 -11.24846 -11.04218 -10.95751 -10.83160 -10.71490 -10.64068 -10.21810 -10.18748 -10.07367 -9.72102 -9.10402 -8.95294 -8.92663 -8.58699 -8.48511 -7.51878 -7.04958 -6.12443 -4.02888 1.67367 2.20942 2.74720 3.21172 3.29845 3.36138 3.39088 3.39306 3.72180 4.29461 4.37866 4.38408 4.42845 4.55578 4.61876 4.64050 4.76557 4.84666 4.98251 5.07786 5.13854 5.15614 5.19857 5.26435 5.33848 5.37518 5.46527 5.54281 5.68042 5.72640 5.77170 5.96233 6.18879 6.37630 6.39201 6.40354 6.44855 6.52171 6.62964 6.69667 6.86968 6.90219 6.93590 7.08514 7.24742 7.44545 7.52514 7.62100 7.70048 7.79477 8.35151 8.93478 9.53051 10.97142 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.001717 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.160595 B =16299.563258 C =16383.462285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.490 4.490 8 C 0.015 3.985 9 C -0.115 4.115 10 C 0.151 3.849 11 H 0.108 0.892 12 N -0.672 5.672 13 C 0.562 3.438 14 S -0.652 6.652 15 N -0.697 5.697 16 C 0.130 3.870 17 C -0.130 4.130 18 C 0.060 3.940 19 N -0.538 5.538 20 C 0.013 3.987 21 C 0.063 3.937 22 O -0.387 6.387 23 C 0.063 3.937 24 C 0.017 3.983 25 C -0.110 4.110 26 C -0.006 4.006 27 H 0.265 0.735 28 H 0.062 0.938 29 H 0.010 0.990 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.391 0.609 33 H 0.393 0.607 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.025 0.975 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.478 -20.029 -14.805 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.509 4.509 8 C -0.023 4.023 9 C -0.154 4.154 10 C 0.049 3.951 11 H 0.126 0.874 12 N -0.297 5.297 13 C 0.201 3.799 14 S -0.528 6.528 15 N -0.329 5.329 16 C 0.006 3.994 17 C -0.168 4.168 18 C -0.068 4.068 19 N -0.263 5.263 20 C -0.115 4.115 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.014 4.014 24 C -0.111 4.111 25 C -0.150 4.150 26 C -0.044 4.044 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.676 -20.035 -13.928 29.002 hybrid contribution -0.051 1.291 -1.314 1.843 sum 15.625 -18.744 -15.242 28.771 Atomic orbital electron populations 1.69816 1.06139 1.27094 1.49787 1.24830 0.94725 0.98587 0.94462 0.86647 0.79365 0.82894 0.79134 1.20081 1.21928 1.19823 1.20053 0.89466 0.91379 1.50022 1.19323 0.98663 0.92730 0.91562 1.21995 0.91922 0.98777 1.02660 1.21664 0.94175 0.88769 0.90518 0.87405 1.45790 1.19710 1.42718 1.21525 1.22248 0.85380 0.80681 0.91599 1.93407 1.61893 1.82349 1.15127 1.44890 1.25528 1.44498 1.17998 1.21512 0.84493 0.95244 0.98190 1.21810 0.98457 0.98766 0.97776 1.21977 0.96195 0.95704 0.92950 1.62189 1.39329 1.20095 1.04662 1.22871 1.01212 0.95866 0.91575 1.22675 0.90703 0.91603 0.96407 1.87997 1.42256 1.52706 1.47555 1.22674 1.01930 0.92267 0.84503 1.22798 0.92666 0.96252 0.99414 1.21858 0.98478 0.94106 1.00545 1.19550 0.96267 0.94387 0.94175 0.92531 0.91962 0.97174 0.92869 0.94605 0.77415 0.77115 0.89654 0.89889 0.91335 0.90335 0.89801 0.93891 0.93718 0.89304 0.88404 0.92205 0.92182 0.88353 0.89323 0.93708 0.93078 0.93649 0.95607 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 12.73 55.43 0.71 -24.44 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.30 26.80 -169.99 -4.56 16.74 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.49 -12.68 5.52 -98.92 -0.55 -13.22 16 8 C 0.02 0.36 5.97 -27.49 -0.16 0.20 16 9 C -0.11 -2.24 5.40 -26.63 -0.14 -2.38 16 10 C 0.15 2.81 2.12 -67.97 -0.14 2.67 16 11 H 0.11 2.28 6.82 -51.93 -0.35 1.93 16 12 N -0.67 -9.68 5.08 -55.56 -0.28 -9.96 16 13 C 0.56 8.18 7.94 -86.92 -0.69 7.49 16 14 S -0.65 -12.58 26.56 -107.50 -2.86 -15.43 16 15 N -0.70 -6.92 5.56 -62.03 -0.34 -7.27 16 16 C 0.13 1.15 5.13 -4.04 -0.02 1.13 16 17 C -0.13 -0.78 5.26 -26.73 -0.14 -0.92 16 18 C 0.06 0.37 4.96 -3.82 -0.02 0.35 16 19 N -0.54 -3.50 4.73 -234.29 -1.11 -4.61 16 20 C 0.01 0.08 5.44 -3.70 -0.02 0.06 16 21 C 0.06 0.38 7.01 37.21 0.26 0.65 16 22 O -0.39 -3.10 10.83 -35.23 -0.38 -3.48 16 23 C 0.06 0.37 7.01 37.21 0.26 0.63 16 24 C 0.02 0.10 5.65 -3.71 -0.02 0.08 16 25 C -0.11 -2.27 5.44 -26.65 -0.14 -2.42 16 26 C -0.01 -0.13 5.59 -27.51 -0.15 -0.29 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.06 1.63 7.07 -51.92 -0.37 1.26 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.39 4.39 8.61 -40.82 -0.35 4.04 16 33 H 0.39 2.73 8.49 -40.82 -0.35 2.38 16 34 H 0.09 0.87 7.99 -51.93 -0.42 0.45 16 35 H 0.08 0.86 7.99 -51.93 -0.41 0.45 16 36 H 0.07 0.38 6.52 -51.93 -0.34 0.05 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.46 6.39 -51.93 -0.33 0.13 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 1.06 7.47 -51.93 -0.39 0.67 16 49 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.03 0.60 5.17 -51.93 -0.27 0.34 16 51 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -32.03 400.26 -13.62 -45.64 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -9.04 Total: 0.78 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.78 Total: -4.00 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -1.03 Total: -46.28 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -0.38 Total: -3.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.56 Total: 16.74 kcal Atomic # 16 Polarization: -12.58 SS G_CDS: -2.86 Total: -15.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.03 -13.62 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199954121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.392 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds